mirror of
https://github.com/beak-insights/felicity-lims.git
synced 2025-02-19 22:42:54 +08:00
added automata script
This commit is contained in:
Aurthur Musendame
parent
38fd5affc9
commit
470d7146b2
2 changed files with 169 additions and 0 deletions
78
bin/Make
Normal file
78
bin/Make
Normal file
|
|
@ -0,0 +1,78 @@
|
|||
# Variables
|
||||
CONDA_INSTALLER_URL=https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
|
||||
REPO_URL=https://github.com/beak-insights/felicity-lims/
|
||||
INSTALL_DIR=/home/felicity/felicity-lims
|
||||
CONDA_DIR=/home/felicity/miniconda3
|
||||
ENV_NAME=felicity
|
||||
PYTHON_VERSION=3.12
|
||||
|
||||
help: ## Show this help.
|
||||
u/egrep -h '(\s##\s|^##\s)' $(MAKEFILE_LIST) | egrep -v '^--' | awk 'BEGIN {FS = ":.*?## "}; {printf "\033[32m %-35s\033[0m %s\n", $$1, $$2}'
|
||||
|
||||
# Default target
|
||||
all: install-dependencies create-user clone-repo install-miniconda setup-env install-node setup-pnpm setup-db install-webapp setup-supervisor
|
||||
|
||||
# Install dependencies
|
||||
install-dependencies:
|
||||
sudo apt-get update
|
||||
sudo apt-get install -y git libcairo2-dev pkg-config python3-dev gcc g++ postgresql postgresql-contrib
|
||||
|
||||
# Create user 'felicity' with password 'felicity'
|
||||
create-user:
|
||||
sudo adduser --disabled-password --gecos "" felicity
|
||||
echo "felicity:felicity" | sudo chpasswd
|
||||
|
||||
# Clone the repository
|
||||
clone-repo: create-user
|
||||
sudo -u felicity git clone $(REPO_URL) $(INSTALL_DIR)
|
||||
|
||||
# Download and install Miniconda
|
||||
install-miniconda:
|
||||
wget $(CONDA_INSTALLER_URL) -O Miniconda.sh
|
||||
bash Miniconda.sh -b -p $(CONDA_DIR)
|
||||
rm Miniconda.sh
|
||||
|
||||
# Create and activate the 'felicity' environment
|
||||
setup-env: install-miniconda
|
||||
sudo -u felicity $(CONDA_DIR)/bin/conda create -n $(ENV_NAME) python=$(PYTHON_VERSION) -y
|
||||
|
||||
# Install Node.js 18 and PNPM
|
||||
install-node:
|
||||
curl -fsSL https://deb.nodesource.com/setup_18.x | sudo -E bash -
|
||||
sudo apt-get install -y nodejs
|
||||
|
||||
setup-pnpm: install-node
|
||||
npm install -g pnpm
|
||||
|
||||
# Set up PostgreSQL
|
||||
setup-db: install-dependencies
|
||||
sudo systemctl start postgresql
|
||||
sudo systemctl enable postgresql
|
||||
sudo -u postgres psql -c "CREATE USER felicity WITH PASSWORD 'felicity';"
|
||||
sudo -u postgres psql -c "CREATE DATABASE felicity_lims OWNER felicity;"
|
||||
sudo -u postgres psql -d felicity_lims -c "GRANT ALL PRIVILEGES ON SCHEMA public TO felicity;"
|
||||
|
||||
# Install webapp dependencies and build the project
|
||||
install-webapp: clone-repo setup-env setup-pnpm
|
||||
cd $(INSTALL_DIR) && sudo -u felicity $(CONDA_DIR)/envs/$(ENV_NAME)/bin/pnpm i
|
||||
cd $(INSTALL_DIR) && sudo -u felicity $(CONDA_DIR)/envs/$(ENV_NAME)/bin/pnpm standalone:build
|
||||
|
||||
# Set up Supervisor
|
||||
setup-supervisor:
|
||||
sudo apt-get install -y supervisor
|
||||
@echo "[program:felicity_lims]" | sudo tee /etc/supervisor/conf.d/felicity_lims.conf
|
||||
@echo "command=$(CONDA_DIR)/envs/$(ENV_NAME)/bin/python $(INSTALL_DIR)/path/to/felicity_script.py" | sudo tee -a /etc/supervisor/conf.d/felicity_lims.conf
|
||||
@echo "autostart=true" | sudo tee -a /etc/supervisor/conf.d/felicity_lims.conf
|
||||
@echo "autorestart=true" | sudo tee -a /etc/supervisor/conf.d/felicity_lims.conf
|
||||
@echo "stderr_logfile=/var/log/felicity_lims.err.log" | sudo tee -a /etc/supervisor/conf.d/felicity_lims.conf
|
||||
@echo "stdout_logfile=/var/log/felicity_lims.out.log" | sudo tee -a /etc/supervisor/conf.d/felicity_lims.conf
|
||||
sudo supervisorctl reread
|
||||
sudo supervisorctl update
|
||||
|
||||
# Clean up
|
||||
clean:
|
||||
rm -rf $(INSTALL_DIR)
|
||||
sudo deluser felicity --remove-home
|
||||
sudo apt-get remove --purge -y git libcairo2-dev pkg-config python3-dev gcc g++ postgresql postgresql-contrib nodejs supervisor
|
||||
sudo apt-get autoremove -y
|
||||
sudo apt-get clean
|
||||
91
bin/felicity.sh
Normal file
91
bin/felicity.sh
Normal file
|
|
@ -0,0 +1,91 @@
|
|||
#!/bin/bash
|
||||
|
||||
# Update package lists
|
||||
sudo apt-get update
|
||||
|
||||
# Install required packages
|
||||
sudo apt-get install -y git libcairo2-dev pkg-config python3-dev gcc g++
|
||||
|
||||
# Create user 'felicity' with password 'felicity'
|
||||
sudo adduser --disabled-password --gecos "" felicity
|
||||
echo "felicity:felicity" | sudo chpasswd
|
||||
|
||||
# Switch to the 'felicity' user
|
||||
sudo -u felicity
|
||||
|
||||
# Install PostgreSQL
|
||||
sudo apt-get install -y postgresql postgresql-contrib
|
||||
|
||||
# Start PostgreSQL service
|
||||
sudo systemctl start postgresql
|
||||
sudo systemctl enable postgresql
|
||||
|
||||
# Create PostgreSQL user 'felicity' with password 'felicity'
|
||||
sudo -u postgres psql -c "CREATE USER felicity WITH PASSWORD 'felicity';"
|
||||
|
||||
# Create a database for 'felicity'
|
||||
sudo -u postgres psql -c "CREATE DATABASE felicity_lims OWNER felicity;"
|
||||
|
||||
# Grant all privileges on the 'public' schema to the 'felicity' user
|
||||
sudo -u postgres psql -d felicity_lims -c "GRANT ALL PRIVILEGES ON SCHEMA public TO felicity;"
|
||||
|
||||
# Download and install Miniconda
|
||||
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
|
||||
bash Miniconda3-latest-Linux-x86_64.sh -b
|
||||
|
||||
# Initialize Miniconda
|
||||
export PATH="/home/felicity/miniconda3/bin:\$PATH"
|
||||
source /home/felicity/miniconda3/bin/activate
|
||||
|
||||
# Create and activate the 'felicity' environment with Python 3.12
|
||||
conda create -n felicity python=3.12 -y
|
||||
conda activate felicity
|
||||
|
||||
# Install Node.js 18 and PNPM
|
||||
curl -fsSL https://deb.nodesource.com/setup_18.x | sudo -E bash -
|
||||
sudo apt-get install -y nodejs
|
||||
npm install -g pnpm
|
||||
|
||||
# Clone the repository
|
||||
# shellcheck disable=SC2164
|
||||
cd /home/felicity
|
||||
git clone https://github.com/beak-insights/felicity-lims.git
|
||||
|
||||
# Change directory to the cloned repository
|
||||
# shellcheck disable=SC2164
|
||||
cd /home/felicity/felicity-lims
|
||||
|
||||
# install requirements
|
||||
pip install -r requirements.txt
|
||||
|
||||
# Set up PostgreSQL
|
||||
pnpm db:al:upgrade
|
||||
|
||||
# Install webapp dependencies
|
||||
pnpm i
|
||||
|
||||
# Build webapp and set up Felicity to serve static files
|
||||
pnpm standalone:build
|
||||
|
||||
# Install Supervisor
|
||||
sudo apt-get install -y supervisor
|
||||
|
||||
# Create Supervisor configuration file
|
||||
cat <<EOF | sudo tee /etc/supervisor/conf.d/felicity_lims.conf
|
||||
[program:felicity_lims]
|
||||
command=/home/felicity/miniconda3/envs/felicity/bin/python /home/felicity/felicity-lims
|
||||
autostart=true
|
||||
autorestart=true
|
||||
stderr_logfile=/var/log/felicity_lims.err.log
|
||||
stdout_logfile=/var/log/felicity_lims.out.log
|
||||
EOF
|
||||
|
||||
# Update Supervisor
|
||||
sudo supervisorctl reread
|
||||
sudo supervisorctl update
|
||||
|
||||
# Check Supervisor status
|
||||
sudo systemctl status supervisor
|
||||
|
||||
# Check program status
|
||||
sudo supervisorctl status
|
||||
Loading…
Reference in a new issue