scinote-web/app/utilities/protocol_importers/protocol_intermediate_object.rb

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# frozen_string_literal: true
module ProtocolImporters
class ProtocolIntermediateObject
attr_reader :normalized_protocol_data, :user, :team, :protocol, :steps_assets, :build_with_assets
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def initialize(normalized_json: {}, user:, team:, build_with_assets: true)
@normalized_protocol_data = normalized_json.with_indifferent_access[:protocol] if normalized_json
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@user = user
@team = team
@steps_assets = {}
@build_with_assets = build_with_assets
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end
def import
build unless @protocol
@protocol.save
@protocol
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end
def build
@protocol = Protocol.new(protocol_attributes)
@protocol.description = ProtocolDescriptionBuilder.generate(@normalized_protocol_data)
@protocol.steps << build_steps
@protocol
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end
private
def build_steps
@normalized_protocol_data[:steps].map do |s|
step = Step.new(step_attributes(s))
if @build_with_assets
step.assets << AttachmentsBuilder.generate(s, user: user, team: team)
else
@steps_assets[step.position] = AttachmentsBuilder.generate_json(s)
end
step.tables << TablesBuilder.extract_tables_from_html_string(s[:description][:body], true)
step.description = StepDescriptionBuilder.generate(s)
step
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end
end
def protocol_attributes
{
protocol_type: :in_repository_public,
added_by: @user,
team: @team,
name: @normalized_protocol_data[:name],
published_on: Time.at(@normalized_protocol_data[:published_on]),
authors: @normalized_protocol_data[:authors]
}
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end
def step_attributes(step_json)
defaults = { user: @user, completed: false }
step_json.slice(:name, :position).merge!(defaults)
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end
end
end