scinote-web/app/assets/templates/experiment_433/experiment.json

1 line
31 KiB
JSON
Raw Normal View History

2019-02-11 21:02:49 +08:00
{"experiment":{"id":433,"name":"Development of SNP markers panel","description":"Single nucleotide polymorphisms (SNPs) markers are widely used for genomic research and breeding. Development of a panel of diagnostic SNP markers is used for the genotyping as well as the identification of hybrids and interspecies introgression events.","project_id":223,"created_by_id":202,"last_modified_by_id":202,"archived":false,"archived_by_id":null,"archived_on":null,"restored_by_id":null,"restored_on":null,"created_at":"2018-11-12T08:12:09.669Z","updated_at":"2018-12-17T12:20:31.178Z","workflowimg_file_name":"wimg20181217-1-jr6hrp.png","workflowimg_content_type":"image/png","workflowimg_file_size":1486,"workflowimg_updated_at":"2018-12-17T12:20:31.178Z","uuid":"7a4f3814-ee01-4afc-804d-ef3e9051c844"},"my_modules":[{"my_module":{"id":2152,"name":"Phylogenetic analysis","due_date":null,"description":null,"x":72,"y":0,"my_module_group_id":null,"created_at":"2018-11-12T08:39:44.265Z","updated_at":"2018-11-12T15:01:31.660Z","archived":true,"archived_on":"2018-11-12T15:01:31.000Z","created_by_id":202,"last_modified_by_id":202,"archived_by_id":202,"restored_by_id":null,"restored_on":null,"nr_of_assigned_samples":0,"workflow_order":-1,"experiment_id":433,"state":"uncompleted","completed_on":null,"electronic_signature_status":"unlocked","electronic_signature_status_locked_at":null},"outputs":[],"my_module_tags":[],"task_comments":[],"my_module_repository_rows":[],"user_my_modules":[],"protocols":[{"protocol":{"id":3490,"name":null,"authors":null,"description":null,"added_by_id":null,"my_module_id":2152,"team_id":1,"protocol_type":"unlinked","parent_id":null,"parent_updated_at":null,"archived_by_id":null,"archived_on":null,"restored_by_id":null,"restored_on":null,"created_at":"2018-11-12T08:39:44.269Z","updated_at":"2018-11-12T08:39:44.269Z","published_on":null,"nr_of_linked_children":0},"protocol_protocol_keywords":[],"steps":[]}],"results":[]},{"my_module":{"id":2153,"name":"Data analysis","due_date":null,"description":null,"x":0,"y":0,"my_module_group_id":null,"created_at":"2018-11-12T08:39:44.287Z","updated_at":"2018-12-17T07:51:25.099Z","archived":true,"archived_on":"2018-12-17T07:51:24.000Z","created_by_id":202,"last_modified_by_id":202,"archived_by_id":202,"restored_by_id":null,"restored_on":null,"nr_of_assigned_samples":0,"workflow_order":-1,"experiment_id":433,"state":"uncompleted","completed_on":null,"electronic_signature_status":"unlocked","electronic_signature_status_locked_at":null},"outputs":[],"my_module_tags":[],"task_comments":[],"my_module_repository_rows":[],"user_my_modules":[],"protocols":[{"protocol":{"id":3491,"name":null,"authors":null,"description":null,"added_by_id":null,"my_module_id":2153,"team_id":1,"protocol_type":"unlinked","parent_id":null,"parent_updated_at":null,"archived_by_id":null,"archived_on":null,"restored_by_id":null,"restored_on":null,"created_at":"2018-11-12T08:39:44.293Z","updated_at":"2018-11-23T14:01:08.906Z","published_on":null,"nr_of_linked_children":0},"protocol_protocol_keywords":[],"steps":[{"step":{"id":4425,"name":"RAD library construction","description":"\u003c!DOCTYPE html PUBLIC \"-//W3C//DTD HTML 4.0 Transitional//EN\" \"http://www.w3.org/TR/REC-html40/loose.dtd\"\u003e\n\u003chtml\u003e\u003cbody\u003e\u003cp\u003eData analysis is carried out using R and an associated R/\u003cem\u003eadegenet\u003c/em\u003e package for Principal Component Analysis (PCA) and Discriminant Analysis of Principal Components (DAPC). \u003cbr\u003ePCA creates simplified models of the total variation within the dataset.\u003cbr\u003eDAPC identifies clusters of genetically related individuals.\u003c/p\u003e\u003c/body\u003e\u003c/html\u003e","position":0,"completed":false,"completed_on":null,"user_id":202,"created_at":"2018-11-12T15:04:11.850Z","updated_at":"2018-11-23T14:01:08.780Z","last_modified_by_id":202,"protocol_id":3491},"checklists":[],"step_comments":[],"step_assets":[],"assets":[],"step_tables":[],"tables":[]}]}],"results":[]},{"my_module":{"id":2150,"name":"RAD library preparation and sequencing","du