scinote-web/app/helpers/reports_helper.rb

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# frozen_string_literal: true
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module ReportsHelper
include StringUtility
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def render_new_element(hide)
render partial: 'reports/elements/new_element.html.erb',
locals: { hide: hide }
end
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def render_report_element(element, provided_locals = nil)
# Determine partial
file_name = element.type_of
if element.type_of.in? ReportExtends::MY_MODULE_CHILDREN_ELEMENTS
file_name = "my_module_#{element.type_of.singularize}"
end
view = "reports/elements/#{file_name}_element.html.erb"
# Set locals
locals = provided_locals.nil? ? {} : provided_locals.clone
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children_html = ''.html_safe
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# First, recursively render element's children
if element.comments? || element.project_header?
# Render no children
elsif element.result?
# Special handling for result comments
if element.has_children?
children_html.safe_concat render_new_element(true)
element.children.each do |child|
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children_html
.safe_concat render_report_element(child, provided_locals)
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end
else
children_html.safe_concat render_new_element(false)
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end
else
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if element.has_children?
element.children.each do |child|
children_html.safe_concat render_new_element(false)
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children_html
.safe_concat render_report_element(child, provided_locals)
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end
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end
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children_html.safe_concat render_new_element(false)
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end
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locals[:children] = children_html
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if provided_locals[:export_all]
# Set path and filename locals for files and tables in export all ZIP
if element['type_of'] == 'my_module_repository'
obj_id = element[:repository_id]
elsif element['type_of'].in? %w(step_asset step_table result_asset
result_table)
parent_el = ReportElement.find(element['parent_id'])
parent_type = parent_el[:type_of]
parent = parent_type.singularize.classify.constantize
.find(parent_el["#{parent_type}_id"])
if parent.class == Step
obj_id = if element['type_of'] == 'step_asset'
element[:asset_id]
elsif element['type_of'] == 'step_table'
element[:table_id]
end
elsif parent.class == MyModule
result = Result.find(element[:result_id])
obj_id = if element['type_of'] == 'result_asset'
result.asset.id
elsif element['type_of'] == 'result_table'
result.table.id
end
end
end
if obj_id
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file = provided_locals[:obj_filenames][element['type_of'].to_sym][obj_id]
locals[:path] = {
file: file[:file].sub(%r{/usr/src/app/tmp/temp-zip-\d+/}, ''),
preview: file[:preview]&.sub(%r{/usr/src/app/tmp/temp-zip-\d+/}, '')
}
locals[:filename] = locals[:path][:file].split('/').last
end
end
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# ReportExtends is located in config/initializers/extends/report_extends.rb
ReportElement.type_ofs.keys.each do |type|
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next unless element.public_send("#{type}?")
element.element_references.each do |el_ref|
locals[el_ref.class.name.underscore.to_sym] = el_ref
end
locals[:order] = element.sort_order if type.in? ReportExtends::SORTED_ELEMENTS
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end
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(render partial: view, locals: locals).html_safe
end
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# "Hack" to omit file preview URL because of WKHTML issues
def report_image_asset_url(asset)
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preview = asset.inline? ? asset.large_preview : asset.medium_preview
image_tag(preview.processed
.service_url(expires_in: Constants::URL_LONG_EXPIRE_TIME))
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end
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# "Hack" to load Glyphicons css directly from the CDN
# site so they work in report
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def bootstrap_cdn_link_tag
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specs = Gem.loaded_specs['bootstrap-sass']
return '' unless specs.present?
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stylesheet_link_tag("http://netdna.bootstrapcdn.com/bootstrap/" \
"#{specs.version.version}/css/bootstrap.min.css",
media: 'all')
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end
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def font_awesome_cdn_link_tag
stylesheet_link_tag(
'https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.9.0/css/fontawesome.min.css',
'https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.9.0/css/regular.min.css',
'https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.9.0/css/solid.min.css'
)
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end
def assigned_repository_or_snapshot(my_module, element_id, snapshot, repository)
if element_id
repository = Repository.accessible_by_teams(my_module.experiment.project.team).find_by(id: element_id)
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# Check for default set snapshots when repository still exists
if repository
selected_snapshot = repository.repository_snapshots.where(my_module: my_module).find_by(selected: true)
repository = selected_snapshot if selected_snapshot
end
repository ||= RepositorySnapshot.joins(my_module: { experiment: :project })
.where(my_module: { experiments: { project: my_module.experiment.project } })
.find_by(id: element_id)
end
repository || snapshot
end
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def assigned_repositories_in_project_list(project)
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live_repositories = Repository.assigned_to_project(project)
snapshots = RepositorySnapshot.of_unassigned_from_project(project)
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snapshots.each { |snapshot| snapshot.name = "#{snapshot.name} #{t('projects.reports.index.deleted')}" }
(live_repositories + snapshots).sort_by { |r| r.name.downcase }
end
def step_status_label(step)
if step.completed
style = 'success'
text = t('protocols.steps.completed')
else
style = 'default'
text = t('protocols.steps.uncompleted')
end
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"<span class=\"label step-label-#{style}\">[#{text}]</span>".html_safe
end
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# Fixes issues with avatar images in reports
def fix_smart_annotation_image(html)
html_doc = Nokogiri::HTML(html)
html_doc.search('.atwho-user-popover').each do |el|
text = el.content
el.replace("<a href='#' style='margin-left: 5px'>#{text}</a>")
end
html_doc.search('[ref="missing-img"]').each do |el|
tag = wicked_pdf_image_tag('icon_small/missing.png')
el.replace(tag)
end
html_doc.to_s
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end
def filter_steps_for_report(steps, settings)
include_completed_steps = settings.dig('task', 'protocol', 'completed_steps')
include_uncompleted_steps = settings.dig('task', 'protocol', 'uncompleted_steps')
if include_completed_steps && include_uncompleted_steps
steps
elsif include_completed_steps
steps.where(completed: true)
elsif include_uncompleted_steps
steps.where(completed: false)
else
steps.none
end
end
def order_results_for_report(results, order)
case order
when 'atoz'
results.order(name: :asc)
when 'ztoa'
results.order(name: :desc)
when 'new'
results.order(updated_at: :desc)
else
results.order(updated_at: :asc)
end
end
def report_experiment_descriptions(report)
report.report_elements.experiment.map do |experiment_element|
experiment_element.experiment.description
end
end
def assigned_to_report_repository_items(report, repository_name)
repository = Repository.accessible_by_teams(report.team).where(name: repository_name).take
return RepositoryRow.none if repository.blank?
my_modules = MyModule.where(experiment: { project: report.project })
.where(id: report.report_elements.my_module.select(:my_module_id))
repository.repository_rows.joins(:my_modules).where(my_modules: my_modules)
end
private
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def obj_name_to_filename(obj, filename_suffix = '')
obj_name = if obj.class == Asset
obj_name, extension = obj.file_name.split('.')
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extension&.prepend('.')
obj_name
elsif obj.class.in? [Table, Result, Repository]
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extension = '.csv'
obj.name.present? ? obj.name : obj.class.name
end
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obj_name = to_filesystem_name(obj_name)
obj_name + "#{filename_suffix}#{extension}"
end
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end