scinote-web/app/assets/templates/experiment_433/experiment.json

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{"experiment":{"id":433,"name":"Development of SNP markers panel","description":"This template shows how to generate a SNP markers panel with the preparation of SNP panel.\r\nSingle nucleotide polymorphisms (SNPs) markers are widely used for genomic research and breeding. Development of a panel of diagnostic SNP markers is used for the genotyping as well as the identification of hybrids and interspecies introgression events.","project_id":223,"created_by_id":202,"last_modified_by_id":202,"archived":false,"archived_by_id":null,"archived_on":null,"restored_by_id":null,"restored_on":null,"created_at":"2018-11-12T08:12:09.669Z","updated_at":"2019-02-07T14:44:00.337Z","workflowimg_file_name":"wimg20181217-1-jr6hrp.png","workflowimg_content_type":"image/png","workflowimg_file_size":1486,"workflowimg_updated_at":"2019-02-07T14:44:00.337Z","uuid":"de7f0d1b-f842-440b-a367-a0333a11430c"},"my_modules":[{"my_module":{"id":2150,"name":"RAD library preparation and sequencing","due_date":null,"description":null,"x":34,"y":0,"my_module_group_id":1167,"created_at":"2018-11-12T08:39:44.221Z","updated_at":"2018-12-17T07:51:25.145Z","archived":false,"archived_on":null,"created_by_id":202,"last_modified_by_id":202,"archived_by_id":null,"restored_by_id":null,"restored_on":null,"nr_of_assigned_samples":0,"workflow_order":1,"experiment_id":433,"state":"uncompleted","completed_on":null},"outputs":[{"id":5924,"input_id":2151,"output_id":2150}],"my_module_tags":[],"task_comments":[],"my_module_repository_rows":[],"user_my_modules":[],"protocols":[{"protocol":{"id":3488,"name":null,"authors":null,"description":null,"added_by_id":null,"my_module_id":2150,"team_id":1,"protocol_type":"unlinked","parent_id":null,"parent_updated_at":null,"archived_by_id":null,"archived_on":null,"restored_by_id":null,"restored_on":null,"created_at":"2018-11-12T08:39:44.225Z","updated_at":"2019-02-20T07:58:51.770Z","published_on":null,"nr_of_linked_children":0},"protocol_protocol_keywords":[],"steps":[{"step":{"id":5192,"name":"PCR genotyping","description":"\u003c!DOCTYPE html PUBLIC \"-//W3C//DTD HTML 4.0 Transitional//EN\" \"http://www.w3.org/TR/REC-html40/loose.dtd\"\u003e\n\u003chtml\u003e\u003cbody\u003e\n\u003cp\u003ePCR conditions: \u003c/p\u003e\n\u003cul\u003e\n\u003cli\u003e95°C for 1 min\u003c/li\u003e\n\u003cli\u003e35 cycles: 95°C for 15 s\u003c/li\u003e\n\u003cli\u003e56°C for 15 s\u003c/li\u003e\n\u003cli\u003e72°C for 22 s\u003c/li\u003e\n\u003c/ul\u003e\n\u003cbr\u003ePCR products run at \u003cstrong\u003e60 V\u003c/strong\u003e for \u003cstrong\u003e40 mins\u003c/strong\u003e on a\u003cstrong\u003e 2%\u003c/strong\u003e agarose gel (\u003cstrong\u003e0.5× TAE\u003c/strong\u003e, stained with \u003cstrong\u003e100 ng/μL\u003c/strong\u003e EtBr).\u003c/body\u003e\u003c/html\u003e","position":0,"completed":false,"completed_on":null,"user_id":202,"created_at":"2018-12-17T07:34:16.845Z","updated_at":"2019-02-19T14:35:53.498Z","last_modified_by_id":202,"protocol_id":3488},"checklists":[],"step_comments":[],"step_assets":[],"assets":[],"step_tables":[{"id":531,"step_id":5192,"table_id":668}],"tables":[{"id":668,"created_at":"2018-12-17T07:35:02.552Z","updated_at":"2019-02-19T14:35:53.484Z","created_by_id":202,"last_modified_by_id":202,"name":"PCR Mastermix","team_id":1,"contents":"eyJkYXRhIjpbWyJDb21wb25lbnQiLCJWb2x1bWUgKMK1bCkiLCJGaW5hbCBD\nb25jLiJdLFsiTXlUYXEgbWl4IiwiMyIsIjF4Il0sWyJGb3J3YXJkIHByaW1l\nciIsIjAsNCIsIjEwIM68TSJdLFsiUmV2ZXJzZSBwcmltZXIiLCIwLDQiLCIx\nMCDOvE0iXSxbIlRlbXBsYXRlIEROQSIsIjAsNSIsIjXigJM1MCBuZy/OvEwi\nXSxbIlVsdHJhcHVyZSB3YXRlciIsIjEsNyIsIiJdXX0=\n","data_vector":"JzAnOjEzLDIwLDI3ICcxJzozOCAnMTAnOjE1LDIyICcxeCc6MTAgJzIwMCc6\nMzEgJzIyMzUwJzozMiAnMjY1bCc6NCAnMjc0bCc6MzUgJzI3NG0nOjE3LDI0\nICczJzo5ICczMDInOjMgJzMxNic6MTYsMjMsMzQgJzM0Mic6MzAgJzQnOjE0\nLDIxICc1JzoyOCwyOSAnNyc6MzkgJ2NvbXBvbmVudCc6MSAnY29uYyc6NiAn\nZG5hJzoyNiAnZmluYWwnOjUgJ2ZvcndhcmQnOjExICdtaXgnOjggJ215dGFx\nJzo3ICduZyc6MzMgJ3ByaW1lcic6MTIsMTkgJ3JldmVyc2UnOjE4ICd0ZW1w\nbGF0ZSc6MjUgJ3VsdHJhcHVyZSc6MzYgJ3ZvbHVtZSc6MiAnd2F0ZXInOjM3\n"}]},{"step":{"id":4422,"name":"Shearing