mirror of
https://github.com/scinote-eln/scinote-web.git
synced 2024-09-21 07:26:15 +08:00
Fix smart annotations in demo project
Closes SCI-3097, SCI-3102.
This commit is contained in:
Jure Grabnar
parent
2464a45f83
commit
30bc536d07
|
|
@ -1,4 +1,7 @@
|
|||
module FirstTimeDataGenerator
|
||||
# Default inventory repository
|
||||
REPO_SAMPLES_NAME = 'Samples'.freeze
|
||||
|
||||
# Create data for demo for new users
|
||||
def seed_demo_data(user, team, asset_queue = :demo)
|
||||
@user = user
|
||||
|
|
@ -8,28 +11,49 @@ module FirstTimeDataGenerator
|
|||
# Do nothing
|
||||
return unless team
|
||||
|
||||
# create custom repository samples
|
||||
repository = Repository.create(
|
||||
name: 'Samples',
|
||||
team: team,
|
||||
created_by: user
|
||||
)
|
||||
# check if samples repo already exist, then create custom repository samples
|
||||
repository = Repository.where(team: team).where(name: REPO_SAMPLES_NAME)
|
||||
repository =
|
||||
if repository.blank?
|
||||
if team.repositories.count < Rails.configuration.x.repositories_limit
|
||||
Repository.create(
|
||||
name: REPO_SAMPLES_NAME,
|
||||
team: team,
|
||||
created_by: user
|
||||
)
|
||||
else
|
||||
# User first repo just as a placeholder, this call will fail anyhow
|
||||
Repository.create(
|
||||
name: team.repositories.first.name,
|
||||
team: team,
|
||||
created_by: user
|
||||
)
|
||||
end
|
||||
else
|
||||
repository.first
|
||||
end
|
||||
|
||||
# create list value column for sample types
|
||||
repository_column_sample_types = RepositoryColumn.create(
|
||||
repository: repository,
|
||||
created_by: user,
|
||||
data_type: :RepositoryListValue,
|
||||
name: 'Sample Types'
|
||||
)
|
||||
repo_columns = []
|
||||
['Sample Types', 'Sample Groups'].each do |repo_name|
|
||||
repo_column = repository.repository_columns.where(name: repo_name)
|
||||
|
||||
# create list value column for sample groups
|
||||
repository_column_sample_groups = RepositoryColumn.create(
|
||||
repository: repository,
|
||||
created_by: user,
|
||||
data_type: :RepositoryListValue,
|
||||
name: 'Sample Groups'
|
||||
)
|
||||
repo_columns <<
|
||||
if repo_column.blank?
|
||||
RepositoryColumn.create(
|
||||
repository: repository,
|
||||
created_by: user,
|
||||
data_type: :RepositoryListValue,
|
||||
name: repo_name
|
||||
)
|
||||
else
|
||||
repo_column.first
|
||||
end
|
||||
end
|
||||
|
||||
# Maintain old names
|
||||
repository_column_sample_types, repository_column_sample_groups =
|
||||
repo_columns
|
||||
|
||||
# create few list items for sample types
|
||||
repository_items_sample_types = []
|
||||
|
|
@ -41,7 +65,15 @@ module FirstTimeDataGenerator
|
|||
repository_column: repository_column_sample_types,
|
||||
repository: repository
|
||||
)
|
||||
repository_items_sample_types << item
|
||||
|
||||
# Check if it already exists
|
||||
if item.persisted?
|
||||
repository_items_sample_types << item
|
||||
else
|
||||
repository_items_sample_types << repository_column_sample_types
|
||||
.repository_list_items
|
||||
.where(data: name).first
|
||||
end
|
||||
end
|
||||
|
||||
# create few list items for sample groups
|
||||
|
|
@ -54,7 +86,15 @@ module FirstTimeDataGenerator
|
|||
repository_column: repository_column_sample_groups,
|
||||
repository: repository
|
||||
)
|
||||
repository_items_sample_groups << item
|
||||
|
||||
# Check if it already exists
|
||||
if item.persisted?
|
||||
repository_items_sample_groups << item
|
||||
else
|
||||
repository_items_sample_groups << repository_column_sample_groups
|
||||
.repository_list_items
|
||||
.where(data: name).first
|
||||
end
|
||||
end
|
||||
|
||||
repository_rows_to_assign = []
|
||||
|
|
@ -585,19 +625,22 @@ module FirstTimeDataGenerator
|
|||
'Collection of potatoes'
|
||||
]
|
||||
|
||||
second_rep_item = smart_annotate_rep_item(repository_rows_to_assign.second)
|
||||
third_rep_item = smart_annotate_rep_item(repository_rows_to_assign.third)
|
||||
fifth_rep_item = smart_annotate_rep_item(repository_rows_to_assign.fifth)
|
||||
module_step_descriptions = [
|
||||
'<html>
|
||||
<body>
|
||||
<p>50% of samples should be mock inoculated
|
||||
<span class=\"atwho-inserted\"contenteditable=\"false\"
|
||||
data-atwho-at-query=\"#\">[#' + sample_name + '3~rep_item~3]</span>
|
||||
data-atwho-at-query=\"#\">[#' + third_rep_item + ']</span>
|
||||
<span class=\"atwho-inserted\" contenteditable=\"false\"
|
||||
data-atwho-at-query=\"#\">[#' + sample_name + '5~rep_item~5]</span>
|
||||
data-atwho-at-query=\"#\">[#' + fifth_rep_item + ']</span>
|
||||
while other 50% with PVY NTN virus
|
||||
<span class=\"atwho-inserted\" contenteditable=\"false\"
|
||||
data-atwho-at-query=\"#\">[#' + sample_name + '3~rep_item~3]</span>
|
||||
data-atwho-at-query=\"#\">[#' + third_rep_item + ']</span>
|
||||
<span class=\"atwho-inserted\" contenteditable=\"false\"
|
||||
data-atwho-at-query=\"#\">[#' + sample_name + '5~rep_item~5]</span>.
|
||||
data-atwho-at-query=\"#\">[#' + fifth_rep_item + ']</span>.
|
||||
</p>
|
||||
</body>
|
||||
</html>',
|
||||
|
|
@ -611,6 +654,9 @@ module FirstTimeDataGenerator
|
|||
module_step_names,
|
||||
module_step_descriptions)
|
||||
|
||||
# Delete repository items, if we went over the limit
|
||||
repository_rows_to_assign.map(&:destroy) unless repository.id
|
||||
|
||||
# Add table to existig step
|
||||
step = my_modules[1].protocol.steps.where('position = 0').take
|
||||
Table.create(
|
||||
|
|
@ -627,12 +673,11 @@ module FirstTimeDataGenerator
|
|||
file_name: 'PVY-inoculated_plant_symptoms.JPG'
|
||||
)
|
||||
# Add comment to step 1
|
||||
user_annotation = '[@' + user.name + '~' + user.id.to_s + ']'
|
||||
user_annotation = user.name
|
||||
generate_step_comment(
|
||||
step,
|
||||
user,
|
||||
user_annotation + ' I have used different sample [#' + sample_name +
|
||||
'2~rep_item~2]'
|
||||
"#{user_annotation} I have used different sample [##{second_rep_item}]"
|
||||
)
|
||||
# Add comment to step 3
|
||||
step = my_modules[1].protocol.steps.where('position = 2').take
|
||||
|
|
@ -1666,4 +1711,8 @@ module FirstTimeDataGenerator
|
|||
step_name: step.name)
|
||||
).sneaky_save
|
||||
end
|
||||
|
||||
def smart_annotate_rep_item(item)
|
||||
"#{item.name}~rep_item~#{Base62.encode(item.id)}"
|
||||
end
|
||||
end
|
||||
|
|
|
|||
Loading…
Reference in a new issue