diff --git a/spec/services/model_importers/test_experiment_data/experiment.json b/spec/services/model_importers/test_experiment_data/experiment.json new file mode 100644 index 000000000..1f85e2c00 --- /dev/null +++ b/spec/services/model_importers/test_experiment_data/experiment.json @@ -0,0 +1,1170 @@ +{ + "experiment": { + "archived": false, + "archived_by_id": null, + "archived_on": null, + "created_at": "2019-01-21T13:27:53.342Z", + "created_by_id": 1, + "description": "My description", + "id": 3, + "last_modified_by_id": 1, + "name": "Experiment export", + "project_id": 1, + "restored_by_id": null, + "restored_on": null, + "updated_at": "2019-01-21T13:32:46.473Z", + "workflowimg_content_type": "image/png", + "workflowimg_file_name": "wimg20190121-1-111oj8z.png", + "workflowimg_file_size": 4581, + "workflowimg_updated_at": "2019-01-21T13:31:04.682Z" + }, + "my_module_groups": [ + { + "created_at": "2019-01-21T13:32:46.449Z", + "created_by_id": 1, + "experiment_id": 3, + "id": 13, + "updated_at": "2019-01-21T13:32:46.449Z" + }, + { + "created_at": "2019-01-21T13:32:46.460Z", + "created_by_id": 1, + "experiment_id": 3, + "id": 14, + "updated_at": "2019-01-21T13:32:46.460Z" + } + ], + "my_modules": [ + { + "my_module": { + "archived": true, + "archived_by_id": 1, + "archived_on": "2019-01-21T13:32:46.000Z", + "completed_on": null, + "created_at": "2019-01-17T09:42:11.511Z", + "created_by_id": 1, + "description": null, + "due_date": "2019-01-28T12:44:56.555Z", + "experiment_id": 3, + "id": 9, + "last_modified_by_id": 1, + "my_module_group_id": null, + "name": "Data analysis - Pfaffl method", + "nr_of_assigned_samples": 0, + "restored_by_id": 1, + "restored_on": "2019-01-21T13:31:37.000Z", + "state": "uncompleted", + "updated_at": "2019-01-21T13:32:46.278Z", + "workflow_order": -1, + "x": 64, + "y": 46 + }, + "my_module_repository_rows": [], + "my_module_tags": [], + "outputs": [], + "protocols": [ + { + "protocol": { + "added_by_id": null, + "archived_by_id": null, + "archived_on": null, + "authors": null, + "created_at": "2019-01-21T12:44:56.564Z", + "description": null, + "id": 9, + "my_module_id": 9, + "name": null, + "nr_of_linked_children": 0, + "parent_id": null, + "parent_updated_at": null, + "protocol_type": "unlinked", + "published_on": null, + "restored_by_id": null, + "restored_on": null, + "team_id": 1, + "updated_at": "2019-01-21T13:31:55.946Z" + }, + "protocol_protocol_keywords": [], + "steps": [ + { + "assets": [], + "checklists": [], + "step": { + "completed": false, + "completed_on": null, + "created_at": "2019-01-21T13:31:55.921Z", + "description": "", + "id": 21, + "last_modified_by_id": 1, + "name": "Temp step", + "position": 0, + "protocol_id": 9, + "updated_at": "2019-01-21T13:31:55.921Z", + "user_id": 1 + }, + "step_assets": [], + "step_comments": [], + "step_tables": [], + "tables": [] + } + ] + } + ], + "results": [], + "task_comments": [], + "user_my_modules": [ + { + "assigned_by_id": 1, + "created_at": "2019-01-17T09:42:54.874Z", + "id": 9, + "my_module_id": 9, + "updated_at": "2019-01-21T12:44:56.591Z", + "user_id": 1 + } + ] + }, + { + "my_module": { + "archived": false, + "archived_by_id": null, + "archived_on": null, + "completed_on": null, + "created_at": "2019-01-21T13:01:34.508Z", + "created_by_id": 1, + "description": null, + "due_date": null, + "experiment_id": 3, + "id": 12, + "last_modified_by_id": 1, + "my_module_group_id": null, + "name": "Lonely task", + "nr_of_assigned_samples": 0, + "restored_by_id": null, + "restored_on": null, + "state": "uncompleted", + "updated_at": "2019-01-21T13:28:43.805Z", + "workflow_order": -1, + "x": 64, + "y": 46 + }, + "my_module_repository_rows": [], + "my_module_tags": [], + "outputs": [], + "protocols": [ + { + "protocol": { + "added_by_id": null, + "archived_by_id": null, + "archived_on": null, + "authors": null, + "created_at": "2019-01-21T13:01:34.544Z", + "description": null, + "id": 12, + "my_module_id": 12, + "name": null, + "nr_of_linked_children": 0, + "parent_id": null, + "parent_updated_at": null, + "protocol_type": "unlinked", + "published_on": null, + "restored_by_id": null, + "restored_on": null, + "team_id": 1, + "updated_at": "2019-01-21T13:04:30.641Z" + }, + "protocol_protocol_keywords": [], + "steps": [ + { + "assets": [], + "checklists": [ + { + "checklist": { + "created_at": "2019-01-21T13:04:30.562Z", + "created_by_id": null, + "id": 2, + "last_modified_by_id": null, + "name": "Guide", + "step_id": 18, + "updated_at": "2019-01-21T13:04:30.562Z" + }, + "checklist_items": [ + { + "checked": false, + "checklist_id": 2, + "created_at": "2019-01-21T13:04:30.565Z", + "created_by_id": null, + "id": 8, + "last_modified_by_id": null, + "position": 0, + "text": "Wolf", + "updated_at": "2019-01-21T13:04:30.565Z" + }, + { + "checked": true, + "checklist_id": 2, + "created_at": "2019-01-21T13:04:30.568Z", + "created_by_id": null, + "id": 9, + "last_modified_by_id": null, + "position": 1, + "text": "Cat", + "updated_at": "2019-01-21T13:04:32.708Z" + }, + { + "checked": false, + "checklist_id": 2, + "created_at": "2019-01-21T13:04:30.570Z", + "created_by_id": null, + "id": 10, + "last_modified_by_id": null, + "position": 2, + "text": "Bull", + "updated_at": "2019-01-21T13:04:30.570Z" + } + ] + } + ], + "step": { + "completed": false, + "completed_on": null, + "created_at": "2019-01-21T13:04:30.558Z", + "description": "", + "id": 18, + "last_modified_by_id": 1, + "name": "Lonelier step", + "position": 0, + "protocol_id": 12, + "updated_at": "2019-01-21T13:04:30.564Z", + "user_id": 1 + }, + "step_assets": [], + "step_comments": [], + "step_tables": [], + "tables": [] + } + ] + } + ], + "results": [], + "task_comments": [], + "user_my_modules": [] + }, + { + "my_module": { + "archived": false, + "archived_by_id": null, + "archived_on": null, + "completed_on": null, + "created_at": "2019-01-21T13:01:34.493Z", + "created_by_id": 1, + "description": null, + "due_date": null, + "experiment_id": 3, + "id": 11, + "last_modified_by_id": 1, + "my_module_group_id": 13, + "name": "Workflow 2 - task 2", + "nr_of_assigned_samples": 0, + "restored_by_id": null, + "restored_on": null, + "state": "uncompleted", + "updated_at": "2019-01-21T13:32:46.452Z", + "workflow_order": 1, + "x": 0, + "y": 46 + }, + "my_module_repository_rows": [], + "my_module_tags": [], + "outputs": [], + "protocols": [ + { + "protocol": { + "added_by_id": null, + "archived_by_id": null, + "archived_on": null, + "authors": null, + "created_at": "2019-01-21T13:01:34.502Z", + "description": null, + "id": 11, + "my_module_id": 11, + "name": null, + "nr_of_linked_children": 0, + "parent_id": null, + "parent_updated_at": null, + "protocol_type": "unlinked", + "published_on": null, + "restored_by_id": null, + "restored_on": null, + "team_id": 1, + "updated_at": "2019-01-21T13:09:36.370Z" + }, + "protocol_protocol_keywords": [], + "steps": [ + { + "assets": [ + { + "created_at": "2019-01-21T13:09:35.615Z", + "created_by_id": 1, + "estimated_size": 17799, + "file_content_type": "image/png", + "file_file_name": "100gen_line_bending.png", + "file_file_size": 16181, + "file_present": true, + "file_processing": false, + "file_updated_at": "2019-01-21T13:10:05.392Z", + "id": 21, + "last_modified_by_id": null, + "lock": null, + "lock_ttl": null, + "team_id": 1, + "updated_at": "2019-01-21T13:10:06.290Z", + "version": 1 + } + ], + "checklists": [], + "step": { + "completed": false, + "completed_on": null, + "created_at": "2019-01-21T13:09:35.466Z", + "description": "", + "id": 20, + "last_modified_by_id": 1, + "name": "Workflow 2 step", + "position": 0, + "protocol_id": 11, + "updated_at": "2019-01-21T13:10:06.292Z", + "user_id": 1 + }, + "step_assets": [ + { + "asset_id": 21, + "id": 9, + "step_id": 20 + } + ], + "step_comments": [], + "step_tables": [], + "tables": [] + } + ] + } + ], + "results": [], + "task_comments": [], + "user_my_modules": [] + }, + { + "my_module": { + "archived": false, + "archived_by_id": null, + "archived_on": null, + "completed_on": null, + "created_at": "2019-01-21T13:01:34.470Z", + "created_by_id": 1, + "description": null, + "due_date": null, + "experiment_id": 3, + "id": 10, + "last_modified_by_id": 1, + "my_module_group_id": 13, + "name": "Workflow 2 - task 1", + "nr_of_assigned_samples": 0, + "restored_by_id": null, + "restored_on": null, + "state": "uncompleted", + "updated_at": "2019-01-21T13:32:46.456Z", + "workflow_order": 0, + "x": 0, + "y": 29 + }, + "my_module_repository_rows": [], + "my_module_tags": [], + "outputs": [ + { + "id": 34, + "input_id": 11, + "output_id": 10 + } + ], + "protocols": [ + { + "protocol": { + "added_by_id": null, + "archived_by_id": null, + "archived_on": null, + "authors": null, + "created_at": "2019-01-21T13:01:34.485Z", + "description": null, + "id": 10, + "my_module_id": 10, + "name": null, + "nr_of_linked_children": 0, + "parent_id": null, + "parent_updated_at": null, + "protocol_type": "unlinked", + "published_on": null, + "restored_by_id": null, + "restored_on": null, + "team_id": 1, + "updated_at": "2019-01-21T13:05:20.594Z" + }, + "protocol_protocol_keywords": [], + "steps": [ + { + "assets": [], + "checklists": [], + "step": { + "completed": false, + "completed_on": null, + "created_at": "2019-01-21T13:05:20.547Z", + "description": "", + "id": 19, + "last_modified_by_id": 1, + "name": "USB step", + "position": 0, + "protocol_id": 10, + "updated_at": "2019-01-21T13:05:36.010Z", + "user_id": 1 + }, + "step_assets": [], + "step_comments": [ + { + "associated_id": 19, + "created_at": "2019-01-21T13:05:36.007Z", + "id": 10, + "last_modified_by_id": null, + "message": "Comment 12", + "updated_at": "2019-01-21T13:05:36.007Z", + "user_id": 1 + } + ], + "step_tables": [ + { + "id": 2, + "step_id": 19, + "table_id": 5 + } + ], + "tables": [ + { + "contents": "eyJkYXRhIjpbWyIxIixudWxsLG51bGwsbnVsbCxudWxsXSxbbnVsbCwiMiIs\nbnVsbCxudWxsLG51bGxdLFtudWxsLG51bGwsIjMiLG51bGwsbnVsbF0sW251\nbGwsbnVsbCxudWxsLCI0IixudWxsXSxbbnVsbCxudWxsLG51bGwsbnVsbCwi\nNSJdXX0=\n", + "created_at": "2019-01-21T13:05:20.550Z", + "created_by_id": 1, + "data_vector": "JzEnOjEgJzInOjcgJzMnOjEzICc0JzoxOSAnNSc6MjUgJ251bGwnOjIsMyw0\nLDUsNiw4LDksMTAsMTEsMTIsMTQsMTUsMTYsMTcsMTgsMjAsMjEsMjIsMjMs\nMjQ=\n", + "id": 5, + "last_modified_by_id": null, + "name": "USB table", + "team_id": 1, + "updated_at": "2019-01-21T13:05:20.550Z" + } + ] + } + ] + } + ], + "results": [], + "task_comments": [], + "user_my_modules": [] + }, + { + "my_module": { + "archived": false, + "archived_by_id": null, + "archived_on": null, + "completed_on": null, + "created_at": "2019-01-19T07:51:02.803Z", + "created_by_id": 1, + "description": null, + "due_date": "2019-01-28T12:44:56.002Z", + "experiment_id": 3, + "id": 1, + "last_modified_by_id": null, + "my_module_group_id": 14, + "name": "Experiment design", + "nr_of_assigned_samples": 0, + "restored_by_id": null, + "restored_on": null, + "state": "uncompleted", + "updated_at": "2019-01-21T13:32:46.464Z", + "workflow_order": 2, + "x": 0, + "y": 0 + }, + "my_module_repository_rows": [], + "my_module_tags": [ + { + "created_by_id": null, + "id": 1, + "my_module_id": 1, + "tag_id": 1 + } + ], + "outputs": [ + { + "id": 32, + "input_id": 4, + "output_id": 1 + } + ], + "protocols": [ + { + "protocol": { + "added_by_id": null, + "archived_by_id": null, + "archived_on": null, + "authors": null, + "created_at": "2019-01-21T12:44:56.065Z", + "description": null, + "id": 1, + "my_module_id": 1, + "name": null, + "nr_of_linked_children": 0, + "parent_id": null, + "parent_updated_at": null, + "protocol_type": "unlinked", + "published_on": null, + "restored_by_id": null, + "restored_on": null, + "team_id": 1, + "updated_at": "2019-01-21T12:44:56.065Z" + }, + "protocol_protocol_keywords": [], + "steps": [ + { + "assets": [], + "checklists": [], + "step": { + "completed": true, + "completed_on": "2019-01-19T10:56:48.558Z", + "created_at": "2019-01-19T08:52:33.490Z", + "description": "Compare response of PVYNTN, cab4 and PR1 genes in mock/virus inoculated potatoes & in time", + "id": 1, + "last_modified_by_id": null, + "name": "Gene expression", + "position": 0, + "protocol_id": 1, + "updated_at": "2019-01-21T12:59:03.007Z", + "user_id": 1 + }, + "step_assets": [], + "step_comments": [ + { + "associated_id": 1, + "created_at": "2019-01-21T12:59:03.005Z", + "id": 9, + "last_modified_by_id": null, + "message": "Very nice job!", + "updated_at": "2019-01-21T12:59:03.005Z", + "user_id": 1 + } + ], + "step_tables": [], + "tables": [] + } + ] + } + ], + "results": [ + { + "asset": null, + "result": { + "archived": false, + "archived_by_id": null, + "archived_on": null, + "created_at": "2019-01-20T00:57:52.635Z", + "id": 1, + "last_modified_by_id": null, + "my_module_id": 1, + "name": "Experimental design", + "restored_by_id": null, + "restored_on": null, + "updated_at": "2019-01-21T12:44:58.101Z", + "user_id": 1 + }, + "result_comments": [], + "result_text": null, + "table": { + "contents": "eyJkYXRhIjpbWyIiLCIiLCIiLG51bGwsbnVsbF0sWyIiLCIiLCIiLG51bGws\nbnVsbF0sWyJncm91cC90aW1lIiwiMSBkcGkiLCI2IGRwaSIsIiIsIiJdLFsi\nUFZZTlROIiwiMSIsIjEiLCIiLCIiXSxbIm1vY2siLCIxIiwiMSIsIiIsIiJd\nLFtudWxsLG51bGwsbnVsbCxudWxsLG51bGxdXX0=\n", + "created_at": "2019-01-21T12:44:58.086Z", + "created_by_id": 1, + "data_vector": "JzEnOjYsMTEsMTIsMTQsMTUgJzYnOjggJ2RwaSc6Nyw5ICdncm91cC90aW1l\nJzo1ICdtb2NrJzoxMyAnbnVsbCc6MSwyLDMsNCwxNiwxNywxOCwxOSwyMCAn\ncHZ5bnRuJzoxMA==\n", + "id": 1, + "last_modified_by_id": null, + "name": "", + "team_id": 1, + "updated_at": "2019-01-21T12:44:58.093Z" + } + }, + { + "asset": { + "created_at": "2019-01-21T12:45:29.138Z", + "created_by_id": 1, + "estimated_size": 232, + "file_content_type": "text/plain", + "file_file_name": "samples.txt", + "file_file_size": 69, + "file_present": true, + "file_processing": false, + "file_updated_at": "2019-01-21T12:45:28.889Z", + "id": 1, + "last_modified_by_id": 1, + "lock": null, + "lock_ttl": null, + "team_id": 1, + "updated_at": "2019-01-21T13:06:01.610Z", + "version": 1 + }, + "result": { + "archived": true, + "archived_by_id": 1, + "archived_on": "2019-01-21T13:15:54.000Z", + "created_at": "2019-01-20T18:09:01.268Z", + "id": 6, + "last_modified_by_id": 1, + "my_module_id": 1, + "name": "sF", + "restored_by_id": null, + "restored_on": null, + "updated_at": "2019-01-21T13:15:54.487Z", + "user_id": 1 + }, + "result_comments": [], + "result_text": null, + "table": {} + } + ], + "task_comments": [ + { + "associated_id": 1, + "created_at": "2019-01-20T01:27:40.727Z", + "id": 2, + "last_modified_by_id": null, + "message": "We should have a meeting to discuss sampling parametrs soon.", + "updated_at": "2019-01-21T12:44:57.607Z", + "user_id": 1 + }, + { + "associated_id": 1, + "created_at": "2019-01-19T11:47:29.757Z", + "id": 3, + "last_modified_by_id": null, + "message": "I agree.", + "updated_at": "2019-01-21T12:44:57.620Z", + "user_id": 1 + } + ], + "user_my_modules": [ + { + "assigned_by_id": 1, + "created_at": "2019-01-19T07:52:25.851Z", + "id": 1, + "my_module_id": 1, + "updated_at": "2019-01-21T12:44:56.118Z", + "user_id": 1 + } + ] + }, + { + "my_module": { + "archived": false, + "archived_by_id": null, + "archived_on": null, + "completed_on": null, + "created_at": "2019-01-17T08:25:30.434Z", + "created_by_id": 1, + "description": null, + "due_date": "2019-03-25T12:44:56.326Z", + "experiment_id": 3, + "id": 5, + "last_modified_by_id": null, + "my_module_group_id": 14, + "name": "Reverse transcription", + "nr_of_assigned_samples": 4, + "restored_by_id": null, + "restored_on": null, + "state": "uncompleted", + "updated_at": "2019-01-21T13:32:46.467Z", + "workflow_order": 4, + "x": 33, + "y": 16 + }, + "my_module_repository_rows": [ + { + "assigned_by_id": 1, + "created_at": "2019-01-21T12:44:57.146Z", + "id": 16, + "my_module_id": 5, + "repository_row_id": 1, + "updated_at": "2019-01-21T12:44:57.146Z" + }, + { + "assigned_by_id": 1, + "created_at": "2019-01-21T12:44:57.169Z", + "id": 17, + "my_module_id": 5, + "repository_row_id": 2, + "updated_at": "2019-01-21T12:44:57.169Z" + }, + { + "assigned_by_id": 1, + "created_at": "2019-01-21T12:44:57.184Z", + "id": 18, + "my_module_id": 5, + "repository_row_id": 3, + "updated_at": "2019-01-21T12:44:57.184Z" + }, + { + "assigned_by_id": 1, + "created_at": "2019-01-21T12:44:57.201Z", + "id": 19, + "my_module_id": 5, + "repository_row_id": 4, + "updated_at": "2019-01-21T12:44:57.201Z" + }, + { + "assigned_by_id": 1, + "created_at": "2019-01-21T12:44:57.217Z", + "id": 20, + "my_module_id": 5, + "repository_row_id": 5, + "updated_at": "2019-01-21T12:44:57.217Z" + } + ], + "my_module_tags": [ + { + "created_by_id": null, + "id": 5, + "my_module_id": 5, + "tag_id": 2 + } + ], + "outputs": [], + "protocols": [ + { + "protocol": { + "added_by_id": null, + "archived_by_id": null, + "archived_on": null, + "authors": null, + "created_at": "2019-01-21T12:44:56.334Z", + "description": null, + "id": 5, + "my_module_id": 5, + "name": null, + "nr_of_linked_children": 0, + "parent_id": null, + "parent_updated_at": null, + "protocol_type": "unlinked", + "published_on": null, + "restored_by_id": null, + "restored_on": null, + "team_id": 1, + "updated_at": "2019-01-21T12:57:52.015Z" + }, + "protocol_protocol_keywords": [], + "steps": [ + { + "assets": [], + "checklists": [ + { + "checklist": { + "created_at": "2019-01-21T12:44:58.537Z", + "created_by_id": null, + "id": 1, + "last_modified_by_id": null, + "name": "Mastermix", + "step_id": 9, + "updated_at": "2019-01-21T12:44:58.537Z" + }, + "checklist_items": [ + { + "checked": true, + "checklist_id": 1, + "created_at": "2019-01-21T12:44:58.540Z", + "created_by_id": null, + "id": 1, + "last_modified_by_id": null, + "position": null, + "text": "RT buffer", + "updated_at": "2019-01-21T12:50:40.690Z" + }, + { + "checked": true, + "checklist_id": 1, + "created_at": "2019-01-21T12:44:58.542Z", + "created_by_id": null, + "id": 2, + "last_modified_by_id": null, + "position": null, + "text": "dNTP mix", + "updated_at": "2019-01-21T12:50:41.287Z" + }, + { + "checked": false, + "checklist_id": 1, + "created_at": "2019-01-21T12:44:58.543Z", + "created_by_id": null, + "id": 3, + "last_modified_by_id": null, + "position": null, + "text": "Random Primers", + "updated_at": "2019-01-21T12:44:58.543Z" + }, + { + "checked": false, + "checklist_id": 1, + "created_at": "2019-01-21T12:44:58.545Z", + "created_by_id": null, + "id": 4, + "last_modified_by_id": null, + "position": null, + "text": "RNase inhibitor", + "updated_at": "2019-01-21T12:44:58.545Z" + }, + { + "checked": false, + "checklist_id": 1, + "created_at": "2019-01-21T12:44:58.547Z", + "created_by_id": null, + "id": 5, + "last_modified_by_id": null, + "position": null, + "text": "Reverse transcriptase", + "updated_at": "2019-01-21T12:44:58.547Z" + }, + { + "checked": false, + "checklist_id": 1, + "created_at": "2019-01-21T12:44:58.548Z", + "created_by_id": null, + "id": 6, + "last_modified_by_id": null, + "position": null, + "text": "Optional: Luciferase mRNA (denatured)", + "updated_at": "2019-01-21T12:44:58.548Z" + }, + { + "checked": false, + "checklist_id": 1, + "created_at": "2019-01-21T12:44:58.550Z", + "created_by_id": null, + "id": 7, + "last_modified_by_id": null, + "position": null, + "text": "H2O to 12.5 ul", + "updated_at": "2019-01-21T12:44:58.550Z" + } + ] + } + ], + "step": { + "completed": true, + "completed_on": "2019-01-17T13:52:32.426Z", + "created_at": "2019-01-17T13:15:20.691Z", + "description": "High Capacity cDNA Reverse Transcription Kit (Applied Biosystems)", + "id": 9, + "last_modified_by_id": null, + "name": "Prepare mastermix for RT", + "position": 1, + "protocol_id": 5, + "updated_at": "2019-01-21T12:44:58.539Z", + "user_id": 1 + }, + "step_assets": [], + "step_comments": [], + "step_tables": [], + "tables": [] + }, + { + "assets": [], + "checklists": [], + "step": { + "completed": false, + "completed_on": null, + "created_at": "2019-01-17T12:58:06.802Z", + "description": "25\u00b0C for 10 min 37\u00b0C for 2 h", + "id": 10, + "last_modified_by_id": null, + "name": "RT reaction", + "position": 2, + "protocol_id": 5, + "updated_at": "2019-01-21T12:44:58.483Z", + "user_id": 1 + }, + "step_assets": [], + "step_comments": [], + "step_tables": [], + "tables": [] + }, + { + "assets": [], + "checklists": [], + "step": { + "completed": true, + "completed_on": "2019-01-17T17:37:06.427Z", + "created_at": "2019-01-17T09:35:43.770Z", + "description": "\n

1 ug of RNA denature at 80\u00b0C for 5 min --> ice

", + "id": 8, + "last_modified_by_id": 1, + "name": "RNA denaturation", + "position": 0, + "protocol_id": 5, + "updated_at": "2019-01-21T12:57:51.929Z", + "user_id": 1 + }, + "step_assets": [], + "step_comments": [], + "step_tables": [ + { + "id": 1, + "step_id": 8, + "table_id": 4 + } + ], + "tables": [ + { + "contents": "eyJkYXRhIjpbWyIxMSIsIjIyIiwiMzMiLCI0NCIsIjU1Il0sW251bGwsbnVs\nbCxudWxsLG51bGwsbnVsbF0sW251bGwsbnVsbCxudWxsLG51bGwsbnVsbF0s\nW251bGwsbnVsbCxudWxsLG51bGwsbnVsbF0sW251bGwsbnVsbCxudWxsLG51\nbGwsIjY3OCJdXX0=\n", + "created_at": "2019-01-21T12:57:51.923Z", + "created_by_id": 1, + "data_vector": "JzExJzoxICcyMic6MiAnMzMnOjMgJzQ0Jzo0ICc1NSc6NSAnNjc4JzoyNSAn\nbnVsbCc6Niw3LDgsOSwxMCwxMSwxMiwxMywxNCwxNSwxNiwxNywxOCwxOSwy\nMCwyMSwyMiwyMywyNA==\n", + "id": 4, + "last_modified_by_id": null, + "name": "", + "team_id": 1, + "updated_at": "2019-01-21T12:57:51.923Z" + } + ] + } + ] + } + ], + "results": [], + "task_comments": [ + { + "associated_id": 5, + "created_at": "2019-01-17T18:29:15.198Z", + "id": 6, + "last_modified_by_id": null, + "message": "Please show Steve the RT procedure.", + "updated_at": "2019-01-21T12:44:57.665Z", + "user_id": 1 + } + ], + "user_my_modules": [ + { + "assigned_by_id": 1, + "created_at": "2019-01-17T08:27:25.032Z", + "id": 5, + "my_module_id": 5, + "updated_at": "2019-01-21T12:44:56.361Z", + "user_id": 1 + } + ] + }, + { + "my_module": { + "archived": false, + "archived_by_id": null, + "archived_on": null, + "completed_on": null, + "created_at": "2019-01-18T16:17:06.765Z", + "created_by_id": 1, + "description": null, + "due_date": "2019-03-11T12:44:56.265Z", + "experiment_id": 3, + "id": 4, + "last_modified_by_id": null, + "my_module_group_id": 14, + "name": "RNA quality & quantity - BIOANALYSER", + "nr_of_assigned_samples": 4, + "restored_by_id": null, + "restored_on": null, + "state": "uncompleted", + "updated_at": "2019-01-21T13:32:46.471Z", + "workflow_order": 3, + "x": 33, + "y": 0 + }, + "my_module_repository_rows": [ + { + "assigned_by_id": 1, + "created_at": "2019-01-21T12:44:57.027Z", + "id": 11, + "my_module_id": 4, + "repository_row_id": 1, + "updated_at": "2019-01-21T12:44:57.027Z" + }, + { + "assigned_by_id": 1, + "created_at": "2019-01-21T12:44:57.047Z", + "id": 12, + "my_module_id": 4, + "repository_row_id": 2, + "updated_at": "2019-01-21T12:44:57.047Z" + }, + { + "assigned_by_id": 1, + "created_at": "2019-01-21T12:44:57.062Z", + "id": 13, + "my_module_id": 4, + "repository_row_id": 3, + "updated_at": "2019-01-21T12:44:57.062Z" + }, + { + "assigned_by_id": 1, + "created_at": "2019-01-21T12:44:57.078Z", + "id": 14, + "my_module_id": 4, + "repository_row_id": 4, + "updated_at": "2019-01-21T12:44:57.078Z" + }, + { + "assigned_by_id": 1, + "created_at": "2019-01-21T12:44:57.093Z", + "id": 15, + "my_module_id": 4, + "repository_row_id": 5, + "updated_at": "2019-01-21T12:44:57.093Z" + } + ], + "my_module_tags": [ + { + "created_by_id": null, + "id": 4, + "my_module_id": 4, + "tag_id": 2 + } + ], + "outputs": [ + { + "id": 33, + "input_id": 5, + "output_id": 4 + } + ], + "protocols": [ + { + "protocol": { + "added_by_id": null, + "archived_by_id": null, + "archived_on": null, + "authors": null, + "created_at": "2019-01-21T12:44:56.272Z", + "description": null, + "id": 4, + "my_module_id": 4, + "name": null, + "nr_of_linked_children": 0, + "parent_id": null, + "parent_updated_at": null, + "protocol_type": "unlinked", + "published_on": null, + "restored_by_id": null, + "restored_on": null, + "team_id": 1, + "updated_at": "2019-01-21T12:44:56.272Z" + }, + "protocol_protocol_keywords": [], + "steps": [ + { + "assets": [ + { + "created_at": "2019-01-21T12:45:32.296Z", + "created_by_id": 1, + "estimated_size": 1129370, + "file_content_type": "application/pdf", + "file_file_name": "G2938-90034_KitRNA6000Nano_ebook.pdf", + "file_file_size": 974068, + "file_present": true, + "file_processing": false, + "file_updated_at": "2019-01-21T12:45:32.237Z", + "id": 8, + "last_modified_by_id": 1, + "lock": null, + "lock_ttl": null, + "team_id": 1, + "updated_at": "2019-01-21T13:06:04.590Z", + "version": 1 + } + ], + "checklists": [], + "step": { + "completed": false, + "completed_on": null, + "created_at": "2019-01-18T16:27:28.209Z", + "description": null, + "id": 7, + "last_modified_by_id": null, + "name": "Use Nano chip for testing RNA integrity", + "position": 0, + "protocol_id": 4, + "updated_at": "2019-01-21T13:06:04.592Z", + "user_id": 1 + }, + "step_assets": [ + { + "asset_id": 8, + "id": 3, + "step_id": 7 + } + ], + "step_comments": [], + "step_tables": [], + "tables": [] + } + ] + } + ], + "results": [ + { + "asset": { + "created_at": "2019-01-21T12:45:32.847Z", + "created_by_id": 1, + "estimated_size": 46131, + "file_content_type": "image/jpeg", + "file_file_name": "Bioanalyser_result.JPG", + "file_file_size": 41938, + "file_present": true, + "file_processing": false, + "file_updated_at": "2019-01-21T12:45:43.655Z", + "id": 9, + "last_modified_by_id": 1, + "lock": null, + "lock_ttl": null, + "team_id": 1, + "updated_at": "2019-01-21T12:45:44.269Z", + "version": 1 + }, + "result": { + "archived": true, + "archived_by_id": 1, + "archived_on": "2019-01-21T13:16:01.000Z", + "created_at": "2019-01-20T13:55:26.927Z", + "id": 11, + "last_modified_by_id": 1, + "my_module_id": 4, + "name": "Result of RNA integrity", + "restored_by_id": null, + "restored_on": null, + "updated_at": "2019-01-21T13:16:01.326Z", + "user_id": 1 + }, + "result_comments": [], + "result_text": null, + "table": {} + } + ], + "task_comments": [], + "user_my_modules": [ + { + "assigned_by_id": 1, + "created_at": "2019-01-18T16:18:49.946Z", + "id": 4, + "my_module_id": 4, + "updated_at": "2019-01-21T12:44:56.301Z", + "user_id": 1 + } + ] + } + ] +}