Merge pull request #728 from ZmagoD/testing-addons

Testing addons

Gemfile

@@ -71,6 +71,9 @@ gem 'tinymce-rails', '~> 4.6.4' # Rich text editor
 
 gem 'base62' # Used for smart annotations
 gem 'newrelic_rpm'
+gem 'devise_security_extension',
+    git: 'https://github.com/phatworx/devise_security_extension.git',
+    ref: 'b2ee978'
 
 group :development, :test do
   gem 'listen', '~> 3.0'

Gemfile.lock

@@ -12,6 +12,15 @@ GIT
     sneaky-save (0.1.2)
       activerecord (>= 3.2.0)
 
+GIT
+  remote: https://github.com/phatworx/devise_security_extension.git
+  revision: b2ee978af7d49f0fb0e7271c6ac074dfb4d39353
+  ref: b2ee978
+  specs:
+    devise_security_extension (0.10.0)
+      devise (>= 3.0.0, < 5.0)
+      railties (>= 3.2.6, < 6.0)
+
 GEM
   remote: http://rubygems.org/
   specs:
@@ -386,6 +395,7 @@ DEPENDENCIES
   devise (~> 4.3.0)
   devise-async
   devise_invitable
+  devise_security_extension!
   faker
   figaro
   font-awesome-rails (~> 4.7.0.2)

app/controllers/users/invitations_controller.rb

@@ -7,7 +7,7 @@ module Users
 
     before_action :check_invite_users_permission, only: :invite_users
 
-    before_filter :update_sanitized_params, only: :update
+    before_action :update_sanitized_params, only: :update
 
     def update
       # Instantialize a new team with the provided name

db/migrate/20150713060702_devise_create_users.rb

@@ -1,4 +1,4 @@
-class DeviseCreateUsers < ActiveRecord::Migration
+class DeviseCreateUsers < ActiveRecord::Migration[4.2]
   def change
     create_table(:users) do |t|
       ## General user data

db/migrate/20150713061603_add_user_columns.rb

@@ -1,4 +1,4 @@
-class AddUserColumns < ActiveRecord::Migration
+class AddUserColumns < ActiveRecord::Migration[4.2]
   def up
     add_attachment :users, :avatar
   end

db/migrate/20150713063224_create_organizations.rb

@@ -1,4 +1,4 @@
-class CreateOrganizations < ActiveRecord::Migration
+class CreateOrganizations < ActiveRecord::Migration[4.2]
   def change
     create_table :teams do |t|
       ## General info

db/migrate/20150713070738_create_user_organizations.rb

@@ -1,4 +1,4 @@
-class CreateUserOrganizations < ActiveRecord::Migration
+class CreateUserOrganizations < ActiveRecord::Migration[4.2]
   def change
     create_table :user_teams do |t|
       t.column :role, :integer, null: false, default: 1

db/migrate/20150713071921_create_projects.rb

@@ -1,4 +1,4 @@
-class CreateProjects < ActiveRecord::Migration
+class CreateProjects < ActiveRecord::Migration[4.2]
   def change
     create_table :projects do |t|
       t.string :name, null: false

db/migrate/20150713072417_create_user_projects.rb

@@ -1,4 +1,4 @@
-class CreateUserProjects < ActiveRecord::Migration
+class CreateUserProjects < ActiveRecord::Migration[4.2]
   def change
     create_table :user_projects do |t|
       t.column :role, :integer, default: 0

db/migrate/20150714125221_add_archive_to_projects.rb

@@ -1,4 +1,4 @@
-class AddArchiveToProjects < ActiveRecord::Migration
+class AddArchiveToProjects < ActiveRecord::Migration[4.2]
   def change
     add_column :projects, :archived, :boolean, { default: false, null: false }
     add_column :projects, :archived_on, :datetime

db/migrate/20150715122019_create_logs.rb

@@ -1,4 +1,4 @@
-class CreateLogs < ActiveRecord::Migration
+class CreateLogs < ActiveRecord::Migration[4.2]
   def change
     create_table :logs do |t|
       t.integer :team_id, null: false

db/migrate/20150715124934_create_my_modules.rb

@@ -1,4 +1,4 @@
-class CreateMyModules < ActiveRecord::Migration
+class CreateMyModules < ActiveRecord::Migration[4.2]
   def change
     create_table :my_modules do |t|
       t.string :name, null: false

db/migrate/20150715131400_create_project_comments.rb

@@ -1,4 +1,4 @@
-class CreateProjectComments < ActiveRecord::Migration
+class CreateProjectComments < ActiveRecord::Migration[4.2]
   def change
     create_table :project_comments do |t|
       t.integer :project_id, null: false

db/migrate/20150715132459_create_my_module_comments.rb

@@ -1,4 +1,4 @@
-class CreateMyModuleComments < ActiveRecord::Migration
+class CreateMyModuleComments < ActiveRecord::Migration[4.2]
   def change
     create_table :my_module_comments do |t|
       t.integer :my_module_id, null: false

db/migrate/20150715132920_create_tags.rb

@@ -1,4 +1,4 @@
-class CreateTags < ActiveRecord::Migration
+class CreateTags < ActiveRecord::Migration[4.2]
   def change
     create_table :tags do |t|
       t.string :name, null:false

db/migrate/20150715133511_create_my_modules_and_tags.rb

@@ -1,4 +1,4 @@
-class CreateMyModulesAndTags < ActiveRecord::Migration
+class CreateMyModulesAndTags < ActiveRecord::Migration[4.2]
   def change
     create_table :my_module_tags do |t|
       t.belongs_to :my_module, index: true

db/migrate/20150715133709_create_my_module_groups.rb

@@ -1,4 +1,4 @@
-class CreateMyModuleGroups < ActiveRecord::Migration
+class CreateMyModuleGroups < ActiveRecord::Migration[4.2]
   def change
     create_table :my_module_groups do |t|
       t.string :name, null: false

db/migrate/20150715134133_create_connections.rb

@@ -1,4 +1,4 @@
-class CreateConnections < ActiveRecord::Migration
+class CreateConnections < ActiveRecord::Migration[4.2]
   def change
     create_table :connections do |t|
       t.integer :input_id, null: false

db/migrate/20150715135452_create_steps.rb

@@ -1,4 +1,4 @@
-class CreateSteps < ActiveRecord::Migration
+class CreateSteps < ActiveRecord::Migration[4.2]
   def change
     create_table :steps do |t|
       t.string :name

db/migrate/20150715141810_create_assets.rb

@@ -1,4 +1,4 @@
-class CreateAssets < ActiveRecord::Migration
+class CreateAssets < ActiveRecord::Migration[4.2]
   def change
     create_table :assets do |t|
 

db/migrate/20150715142704_create_step_assets.rb

@@ -1,4 +1,4 @@
-class CreateStepAssets < ActiveRecord::Migration
+class CreateStepAssets < ActiveRecord::Migration[4.2]
   def change
     create_table :step_assets do |t|
       t.integer :step_id, null: false

db/migrate/20150715142929_create_result_assets.rb

@@ -1,4 +1,4 @@
-class CreateResultAssets < ActiveRecord::Migration
+class CreateResultAssets < ActiveRecord::Migration[4.2]
   def change
     create_table :result_assets do |t|
       t.integer :result_id, null: false

db/migrate/20150715143134_create_results.rb

@@ -1,4 +1,4 @@
-class CreateResults < ActiveRecord::Migration
+class CreateResults < ActiveRecord::Migration[4.2]
   def change
     create_table :results do |t|
       t.string :name

db/migrate/20150716060140_create_result_comments.rb

@@ -1,4 +1,4 @@
-class CreateResultComments < ActiveRecord::Migration
+class CreateResultComments < ActiveRecord::Migration[4.2]
   def change
     create_table :result_comments do |t|
       t.integer :result_id, null: false

db/migrate/20150716061004_create_comments.rb

@@ -1,4 +1,4 @@
-class CreateComments < ActiveRecord::Migration
+class CreateComments < ActiveRecord::Migration[4.2]
   def change
     create_table :comments do |t|
       t.string :message, null: false

db/migrate/20150716061555_create_step_comments.rb

@@ -1,4 +1,4 @@
-class CreateStepComments < ActiveRecord::Migration
+class CreateStepComments < ActiveRecord::Migration[4.2]
   def change
     create_table :step_comments do |t|
       t.integer :step_id, null: false

db/migrate/20150716061937_create_tables.rb

@@ -1,4 +1,4 @@
-class CreateTables < ActiveRecord::Migration
+class CreateTables < ActiveRecord::Migration[4.2]
   def change
     create_table :tables do |t|
       t.binary :contents, null: false, limit: 20.megabyte

db/migrate/20150716062013_create_checklists.rb

@@ -1,4 +1,4 @@
-class CreateChecklists < ActiveRecord::Migration
+class CreateChecklists < ActiveRecord::Migration[4.2]
   def change
     create_table :checklists do |t|
       t.string :name, null: false

db/migrate/20150716062110_create_checklist_items.rb

@@ -1,4 +1,4 @@
-class CreateChecklistItems < ActiveRecord::Migration
+class CreateChecklistItems < ActiveRecord::Migration[4.2]
   def change
     create_table :checklist_items do |t|
       t.string :text, null: false

db/migrate/20150716062801_create_samples.rb

@@ -1,4 +1,4 @@
-class CreateSamples < ActiveRecord::Migration
+class CreateSamples < ActiveRecord::Migration[4.2]
   def change
     create_table :samples do |t|
       t.string :name, null: false

db/migrate/20150716064453_create_activities.rb

@@ -1,4 +1,4 @@
-class CreateActivities < ActiveRecord::Migration
+class CreateActivities < ActiveRecord::Migration[4.2]
   def change
     create_table :activities do |t|
       t.integer :my_module_id, null: false

db/migrate/20150716120130_create_sample_my_modules.rb

@@ -1,4 +1,4 @@
-class CreateSampleMyModules < ActiveRecord::Migration
+class CreateSampleMyModules < ActiveRecord::Migration[4.2]
   def change
     create_table :sample_my_modules do |t|
       t.integer :sample_id, null: false

db/migrate/20150716120659_create_sample_comments.rb

@@ -1,4 +1,4 @@
-class CreateSampleComments < ActiveRecord::Migration
+class CreateSampleComments < ActiveRecord::Migration[4.2]
   def change
     create_table :sample_comments do |t|
       t.integer :sample_id, null: false

db/migrate/20150717084645_create_result_texts.rb

@@ -1,4 +1,4 @@
-class CreateResultTexts < ActiveRecord::Migration
+class CreateResultTexts < ActiveRecord::Migration[4.2]
   def change
     create_table :result_texts do |t|
       t.string :text, null: false

db/migrate/20150717085043_create_step_tables.rb

@@ -1,4 +1,4 @@
-class CreateStepTables < ActiveRecord::Migration
+class CreateStepTables < ActiveRecord::Migration[4.2]
   def change
     create_table :step_tables do |t|
       t.integer :step_id, null: false

db/migrate/20150717085133_create_result_tables.rb

@@ -1,4 +1,4 @@
-class CreateResultTables < ActiveRecord::Migration
+class CreateResultTables < ActiveRecord::Migration[4.2]
   def change
     create_table :result_tables do |t|
       t.integer :result_id, null: false

db/migrate/20150722095027_create_user_my_modules.rb

@@ -1,4 +1,4 @@
-class CreateUserMyModules < ActiveRecord::Migration
+class CreateUserMyModules < ActiveRecord::Migration[4.2]
   def change
     create_table :user_my_modules do |t|
       t.integer :user_id, null: false

db/migrate/20150722112911_add_foreign_keys.rb

@@ -1,4 +1,4 @@
-class AddForeignKeys < ActiveRecord::Migration
+class AddForeignKeys < ActiveRecord::Migration[4.2]
   def change
     add_foreign_key :my_modules, :my_module_groups
     add_foreign_key :project_comments, :comments

db/migrate/20150723134648_add_confirmable_to_devise.rb

@@ -1,4 +1,4 @@
-class AddConfirmableToDevise < ActiveRecord::Migration
+class AddConfirmableToDevise < ActiveRecord::Migration[4.2]
   def up
     add_column :users, :confirmation_token, :string
     add_column :users, :confirmed_at, :datetime

db/migrate/20150730090021_add_my_module_groups_to_project.rb

@@ -1,4 +1,4 @@
-class AddMyModuleGroupsToProject < ActiveRecord::Migration
+class AddMyModuleGroupsToProject < ActiveRecord::Migration[4.2]
   def change
     add_column :my_module_groups, :project_id, :integer
 

db/migrate/20150804055341_add_color_to_tags.rb

@@ -1,4 +1,4 @@
-class AddColorToTags < ActiveRecord::Migration
+class AddColorToTags < ActiveRecord::Migration[4.2]
   def change
     add_column :tags, :color, :string, { default: "#ff0000", null: false }
   end

db/migrate/20150820120553_create_sample_groups.rb

@@ -1,4 +1,4 @@
-class CreateSampleGroups < ActiveRecord::Migration
+class CreateSampleGroups < ActiveRecord::Migration[4.2]
   def change
     create_table :sample_groups do |t|
       t.string :name, null: false

db/migrate/20150820123018_create_sample_types.rb

@@ -1,4 +1,4 @@
-class CreateSampleTypes < ActiveRecord::Migration
+class CreateSampleTypes < ActiveRecord::Migration[4.2]
   def change
     create_table :sample_types do |t|
       t.string :name, null: false

db/migrate/20150820124022_add_default_columns_to_samples.rb

@@ -1,4 +1,4 @@
-class AddDefaultColumnsToSamples < ActiveRecord::Migration
+class AddDefaultColumnsToSamples < ActiveRecord::Migration[4.2]
   def change
     add_column :samples, :sample_group_id, :integer
     add_column :samples, :sample_type_id, :integer

db/migrate/20150827130647_create_custom_fields.rb

@@ -1,4 +1,4 @@
-class CreateCustomFields < ActiveRecord::Migration
+class CreateCustomFields < ActiveRecord::Migration[4.2]
   def change
     create_table :custom_fields do |t|
       t.string :name, null: false

db/migrate/20150827130822_create_sample_custom_fields.rb

@@ -1,4 +1,4 @@
-class CreateSampleCustomFields < ActiveRecord::Migration
+class CreateSampleCustomFields < ActiveRecord::Migration[4.2]
   def change
     create_table :sample_custom_fields do |t|
       t.string :value, null: false

db/migrate/20150911125914_add_project_to_tags.rb

@@ -1,4 +1,4 @@
-class AddProjectToTags < ActiveRecord::Migration
+class AddProjectToTags < ActiveRecord::Migration[4.2]
   def change
     # Add project ID reference, make it nullable at first
     add_column :tags, :project_id, :integer, { null: true }

db/migrate/20150915074650_create_reports.rb

@@ -1,4 +1,4 @@
-class CreateReports < ActiveRecord::Migration
+class CreateReports < ActiveRecord::Migration[4.2]
   def change
     create_table :reports do |t|
       t.string :name, null: false

db/migrate/20150923065605_create_temp_files.rb

@@ -1,4 +1,4 @@
-class CreateTempFiles < ActiveRecord::Migration
+class CreateTempFiles < ActiveRecord::Migration[4.2]
   def change
     create_table :temp_files do |t|
       t.string :session_id, null: false

db/migrate/20150923110208_add_archive_to_my_modules.rb

@@ -1,7 +1,6 @@
-class AddArchiveToMyModules < ActiveRecord::Migration
+class AddArchiveToMyModules < ActiveRecord::Migration[4.2]
   def change
     add_column :my_modules, :archived, :boolean, { default: false, null: false }
     add_column :my_modules, :archived_on, :datetime
   end
 end
-

db/migrate/20150923154140_add_index_to_sample_name.rb

@@ -1,4 +1,4 @@
-class AddIndexToSampleName < ActiveRecord::Migration
+class AddIndexToSampleName < ActiveRecord::Migration[4.2]
   def change
     add_index :samples, :name
   end

db/migrate/20150924115001_create_report_elements.rb

@@ -1,4 +1,4 @@
-class CreateReportElements < ActiveRecord::Migration
+class CreateReportElements < ActiveRecord::Migration[4.2]
   def change
     create_table :report_elements do |t|
       t.integer :position, null: false

db/migrate/20150924181017_add_archive_to_results.rb

@@ -1,4 +1,4 @@
-class AddArchiveToResults < ActiveRecord::Migration
+class AddArchiveToResults < ActiveRecord::Migration[4.2]
   def change
     add_column :results, :archived, :boolean, { default: false, null: false }
     add_column :results, :archived_on, :datetime

db/migrate/20151005122041_add_created_by_to_assets.rb

@@ -1,4 +1,4 @@
-class AddCreatedByToAssets < ActiveRecord::Migration
+class AddCreatedByToAssets < ActiveRecord::Migration[4.2]
   def change
     tables = [:assets, :checklists, :checklist_items, :my_module_groups,
       :my_module_tags, :my_modules, :teams, :projects,

db/migrate/20151021082639_add_pg_trgm_support.rb

@@ -1,7 +1,7 @@
 require File.expand_path('app/helpers/database_helper')
 include DatabaseHelper
 
-class AddPgTrgmSupport < ActiveRecord::Migration
+class AddPgTrgmSupport < ActiveRecord::Migration[4.2]
   def up
     if db_adapter_is? "PostgreSQL" then
       create_extension :pg_trgm

db/migrate/20151021085335_add_search_query_indexes.rb

@@ -1,7 +1,7 @@
 require File.expand_path('app/helpers/database_helper')
 include DatabaseHelper
 
-class AddSearchQueryIndexes < ActiveRecord::Migration
+class AddSearchQueryIndexes < ActiveRecord::Migration[4.2]
   def up
     add_index :projects, :team_id
     add_index :user_teams, :user_id

db/migrate/20151022123530_remove_unique_organization_name_index.rb

@@ -1,4 +1,4 @@
-class RemoveUniqueOrganizationNameIndex < ActiveRecord::Migration
+class RemoveUniqueOrganizationNameIndex < ActiveRecord::Migration[4.2]
   def up
     remove_index :teams, :name
     add_index :teams, :name

db/migrate/20151028091615_add_counter_cache_to_samples.rb

@@ -1,4 +1,4 @@
-class AddCounterCacheToSamples < ActiveRecord::Migration
+class AddCounterCacheToSamples < ActiveRecord::Migration[4.2]
   def up
     add_column :samples, :nr_of_modules_assigned_to, :integer, :default => 0
     add_column :my_modules, :nr_of_assigned_samples, :integer, :default => 0

db/migrate/20151103155048_add_btree_gist_extension.rb

@@ -1,7 +1,7 @@
 require File.expand_path('app/helpers/database_helper')
 include DatabaseHelper
 
-class AddBtreeGistExtension < ActiveRecord::Migration
+class AddBtreeGistExtension < ActiveRecord::Migration[4.2]
   def up
     if db_adapter_is? "PostgreSQL" then
       create_extension :btree_gist

db/migrate/20151111135802_reset_assigned_samples_counters.rb

@@ -1,4 +1,4 @@
-class ResetAssignedSamplesCounters < ActiveRecord::Migration
+class ResetAssignedSamplesCounters < ActiveRecord::Migration[4.2]
   def change
     Sample.find_each do |sample|
       Sample.reset_counters(sample.id, :sample_my_modules)

db/migrate/20151117083839_add_project_reference_to_activity.rb

@@ -1,4 +1,4 @@
-class AddProjectReferenceToActivity < ActiveRecord::Migration
+class AddProjectReferenceToActivity < ActiveRecord::Migration[4.2]
   def up
     # Make my module reference nullable
     change_column_null :activities, :my_module_id, true

db/migrate/20151119141714_create_asset_text_data.rb

@@ -1,4 +1,4 @@
-class CreateAssetTextData < ActiveRecord::Migration
+class CreateAssetTextData < ActiveRecord::Migration[4.2]
   def change
     create_table :asset_text_data do |t|
       t.text :data, null: false

db/migrate/20151130160157_add_text_search_vector_to_asset_text_data.rb

@@ -1,7 +1,7 @@
 require File.expand_path('app/helpers/database_helper')
 include DatabaseHelper
 
-class AddTextSearchVectorToAssetTextData < ActiveRecord::Migration
+class AddTextSearchVectorToAssetTextData < ActiveRecord::Migration[4.2]
   def change
     add_column :asset_text_data, :data_vector, :tsvector
 

db/migrate/20151203100514_add_workflow_order_to_my_modules.rb

@@ -1,4 +1,4 @@
-class AddWorkflowOrderToMyModules < ActiveRecord::Migration
+class AddWorkflowOrderToMyModules < ActiveRecord::Migration[4.2]
   def up
     add_column :my_modules, :workflow_order, :integer, { null: false, default: -1}
   end

db/migrate/20151207151820_add_timezone_to_user.rb

@@ -1,4 +1,4 @@
-class AddTimezoneToUser < ActiveRecord::Migration
+class AddTimezoneToUser < ActiveRecord::Migration[4.2]
   def change
     add_column :users, :time_zone, :string, :default => "UTC"
   end

db/migrate/20151214110800_add_organization_management_support.rb

@@ -1,7 +1,7 @@
 require File.expand_path('app/helpers/database_helper')
 include DatabaseHelper
 
-class AddOrganizationManagementSupport < ActiveRecord::Migration
+class AddOrganizationManagementSupport < ActiveRecord::Migration[4.2]
   def up
     # Add nullable description to team
     add_column :teams, :description, :string

db/migrate/20151215103642_add_foreign_keys_to_tables.rb

@@ -1,4 +1,4 @@
-class AddForeignKeysToTables < ActiveRecord::Migration
+class AddForeignKeysToTables < ActiveRecord::Migration[4.2]
   def change
     tables = [:assets, :checklists, :checklist_items, :my_module_groups,
       :my_module_tags, :my_modules, :teams, :projects,

db/migrate/20151215134147_add_text_search_vector_to_tables.rb

@@ -1,7 +1,7 @@
 require File.expand_path('app/helpers/database_helper')
 include DatabaseHelper
 
-class AddTextSearchVectorToTables < ActiveRecord::Migration
+class AddTextSearchVectorToTables < ActiveRecord::Migration[4.2]
   def change
     add_column :tables, :data_vector, :tsvector
 

db/migrate/20151216095259_generate_text_search_vector_for_table_contents.rb

@@ -1,7 +1,7 @@
 require File.expand_path('app/helpers/database_helper')
 include DatabaseHelper
 
-class GenerateTextSearchVectorForTableContents < ActiveRecord::Migration
+class GenerateTextSearchVectorForTableContents < ActiveRecord::Migration[4.2]
   def up
     if db_adapter_is? "PostgreSQL" then
       execute <<-SQL

db/migrate/20160114155705_create_delayed_jobs.rb

@@ -1,4 +1,4 @@
-class CreateDelayedJobs < ActiveRecord::Migration
+class CreateDelayedJobs < ActiveRecord::Migration[4.2]
   def self.up
     create_table :delayed_jobs, force: true do |table|
       table.integer :priority, default: 0, null: false # Allows some jobs to jump to the front of the queue

db/migrate/20160118114850_remove_private_organizations.rb

@@ -1,4 +1,4 @@
-class RemovePrivateOrganizations < ActiveRecord::Migration
+class RemovePrivateOrganizations < ActiveRecord::Migration[4.2]
   def up
     remove_foreign_key :teams, column: :private_user_id
     remove_index :teams, :private_user_id

db/migrate/20160119101947_add_position_to_checklist_item.rb

@@ -1,4 +1,4 @@
-class AddPositionToChecklistItem < ActiveRecord::Migration
+class AddPositionToChecklistItem < ActiveRecord::Migration[4.2]
   def change
     add_column :checklist_items, :position, :integer, { default: 0, null: false }
 

db/migrate/20160125200130_devise_invitable_add_to_users.rb

@@ -1,4 +1,4 @@
-class DeviseInvitableAddToUsers < ActiveRecord::Migration
+class DeviseInvitableAddToUsers < ActiveRecord::Migration[4.2]
   def up
     change_table :users do |t|
       t.string     :invitation_token

db/migrate/20160125205500_add_empty_field_to_asset.rb

@@ -1,4 +1,4 @@
-class AddEmptyFieldToAsset < ActiveRecord::Migration
+class AddEmptyFieldToAsset < ActiveRecord::Migration[4.2]
   def up
     add_column :assets, :file_present, :boolean, default: false
     Asset.update_all(file_present: true)

db/migrate/20160201085344_add_tutorial_status_field_to_user.rb

@@ -1,4 +1,4 @@
-class AddTutorialStatusFieldToUser < ActiveRecord::Migration
+class AddTutorialStatusFieldToUser < ActiveRecord::Migration[4.2]
   def up
     add_column :users, :tutorial_status, :integer, default: 0
 

db/migrate/20160205192344_migrate_organizations_structure.rb

@@ -1,4 +1,4 @@
-class MigrateOrganizationsStructure < ActiveRecord::Migration
+class MigrateOrganizationsStructure < ActiveRecord::Migration[4.2]
   def up
     # Update estimated size of all assets
     Asset.includes(:asset_text_datum).find_each do |asset|

db/migrate/20160407063323_create_protocols.rb

@@ -1,4 +1,4 @@
-class CreateProtocols < ActiveRecord::Migration
+class CreateProtocols < ActiveRecord::Migration[4.2]
   def up
     # First, create protocol table
     create_table :protocols do |t|

db/migrate/20160421100400_add_published_on_to_protocols.rb

@@ -1,4 +1,4 @@
-class AddPublishedOnToProtocols < ActiveRecord::Migration
+class AddPublishedOnToProtocols < ActiveRecord::Migration[4.2]
   def up
     add_column :protocols, :published_on, :datetime
 

db/migrate/20160425133500_add_counter_cache_to_protocols.rb

@@ -1,4 +1,4 @@
-class AddCounterCacheToProtocols < ActiveRecord::Migration
+class AddCounterCacheToProtocols < ActiveRecord::Migration[4.2]
   def up
     add_column :protocols, :nr_of_synced_children, :integer, default: 0
 

db/migrate/20160429082100_add_counter_cache_to_protocol_keywords.rb

@@ -1,4 +1,4 @@
-class AddCounterCacheToProtocolKeywords < ActiveRecord::Migration
+class AddCounterCacheToProtocolKeywords < ActiveRecord::Migration[4.2]
   def up
     add_column :protocol_keywords, :nr_of_protocols, :integer, default: 0
 

db/migrate/20160429102200_add_organization_id_to_protocol_keywords.rb

@@ -1,4 +1,4 @@
-class AddOrganizationIdToProtocolKeywords < ActiveRecord::Migration
+class AddOrganizationIdToProtocolKeywords < ActiveRecord::Migration[4.2]
   def up
     add_column :protocol_keywords, :team_id, :integer
     add_foreign_key :protocol_keywords, :teams, column: :team_id

db/migrate/20160513143117_refresh_assigned_samples_counters.rb

@@ -1,4 +1,4 @@
-class RefreshAssignedSamplesCounters < ActiveRecord::Migration
+class RefreshAssignedSamplesCounters < ActiveRecord::Migration[4.2]
   def up
     # Reset the counters for assigned samples
     Sample.find_each do |sample|

db/migrate/20160513165000_rename_duplicate_columns.rb

@@ -1,4 +1,4 @@
-class RenameDuplicateColumns < ActiveRecord::Migration
+class RenameDuplicateColumns < ActiveRecord::Migration[4.2]
   require 'set'
 
   def up

db/migrate/20160527152000_report_grouping_removal.rb

@@ -1,4 +1,4 @@
-class ReportGroupingRemoval < ActiveRecord::Migration
+class ReportGroupingRemoval < ActiveRecord::Migration[4.2]
   def up
     remove_column :reports, :grouped_by
   end

db/migrate/20160531094100_rename_synced_children_to_linked_children.rb

@@ -1,4 +1,4 @@
-class RenameSyncedChildrenToLinkedChildren < ActiveRecord::Migration
+class RenameSyncedChildrenToLinkedChildren < ActiveRecord::Migration[4.2]
   def up
     rename_column :protocols, :nr_of_synced_children, :nr_of_linked_children
   end

db/migrate/20160704110900_remove_keywords_from_module_protocols.rb

@@ -1,4 +1,4 @@
-class RemoveKeywordsFromModuleProtocols < ActiveRecord::Migration
+class RemoveKeywordsFromModuleProtocols < ActiveRecord::Migration[4.2]
   def up
     Protocol.find_each do |p|
       if p.in_module? then

db/migrate/20160722082700_add_experiment_level.rb

@@ -1,4 +1,4 @@
-class AddExperimentLevel < ActiveRecord::Migration
+class AddExperimentLevel < ActiveRecord::Migration[4.2]
   def up
     # Create experiments table
     create_table :experiments do |t|

db/migrate/20160803082801_add_experiment_to_report_elements.rb

@@ -1,4 +1,4 @@
-class AddExperimentToReportElements < ActiveRecord::Migration
+class AddExperimentToReportElements < ActiveRecord::Migration[4.2]
   def up
     add_column :report_elements, :experiment_id, :integer
     add_foreign_key :report_elements, :experiments

db/migrate/20160808083040_add_attachment_workflowimg_to_experiments.rb

@@ -1,4 +1,4 @@
-class AddAttachmentWorkflowimgToExperiments < ActiveRecord::Migration
+class AddAttachmentWorkflowimgToExperiments < ActiveRecord::Migration[4.2]
   def self.up
     add_attachment :experiments, :workflowimg
   end

db/migrate/20160809074757_update_my_module_coordinate.rb

@@ -1,4 +1,4 @@
-class UpdateMyModuleCoordinate < ActiveRecord::Migration
+class UpdateMyModuleCoordinate < ActiveRecord::Migration[4.2]
   def change
     MyModule.find_each do |my_module|
       x = my_module.x

db/migrate/20160928114119_create_notifications.rb

@@ -1,4 +1,4 @@
-class CreateNotifications < ActiveRecord::Migration
+class CreateNotifications < ActiveRecord::Migration[4.2]
   def change
     create_table :notifications do |t|
       t.string :title

db/migrate/20160928114915_create_user_notifications.rb

@@ -1,4 +1,4 @@
-class CreateUserNotifications < ActiveRecord::Migration
+class CreateUserNotifications < ActiveRecord::Migration[4.2]
   def change
     create_table :user_notifications do |t|
       t.belongs_to :user, index: true, foreign_key: true

db/migrate/20161004074754_add_notifications_settings_to_user.rb

@@ -1,4 +1,4 @@
-class AddNotificationsSettingsToUser < ActiveRecord::Migration
+class AddNotificationsSettingsToUser < ActiveRecord::Migration[4.2]
   def up
     add_column :users, :assignments_notification, :boolean, default: true
     add_column :users, :recent_notification, :boolean, default: true

db/migrate/20161006065203_add_email_notification_settings_to_user.rb

@@ -1,4 +1,4 @@
-class AddEmailNotificationSettingsToUser < ActiveRecord::Migration
+class AddEmailNotificationSettingsToUser < ActiveRecord::Migration[4.2]
   def up
     add_column :users, :assignments_notification_email, :boolean, default: false
     add_column :users, :recent_notification_email, :boolean, default: false

db/migrate/20161011074804_add_current_organization_to_user.rb

@@ -1,4 +1,4 @@
-class AddCurrentOrganizationToUser < ActiveRecord::Migration
+class AddCurrentOrganizationToUser < ActiveRecord::Migration[4.2]
   def up
     add_column :users, :current_team_id, :integer
     add_foreign_key :users, :teams, column: :current_team_id

db/migrate/20161012112900_add_email_system_notification_setting_to_user.rb

@@ -1,4 +1,4 @@
-class AddEmailSystemNotificationSettingToUser < ActiveRecord::Migration
+class AddEmailSystemNotificationSettingToUser < ActiveRecord::Migration[4.2]
   def up
     add_column :users,
                :system_message_notification_email,

db/migrate/20161123161514_create_samples_tables.rb

@@ -1,4 +1,4 @@
-class CreateSamplesTables < ActiveRecord::Migration
+class CreateSamplesTables < ActiveRecord::Migration[4.2]
   def change
     create_table :samples_tables do |t|
       t.jsonb :status, null: false,

db/migrate/20161125153600_rename_non_unique_sample_types_groups.rb

@@ -1,4 +1,4 @@
-class RenameNonUniqueSampleTypesGroups < ActiveRecord::Migration
+class RenameNonUniqueSampleTypesGroups < ActiveRecord::Migration[4.2]
   def up
     Team.find_each do |team|
       st_ids = []

db/migrate/20161129111100_add_wopi.rb

@@ -1,4 +1,4 @@
-class AddWopi < ActiveRecord::Migration
+class AddWopi < ActiveRecord::Migration[4.2]
   def up
     add_column :assets, :lock, :string, limit: 1024
     add_column :assets, :lock_ttl, :integer

db/migrate/20161129171012_add_authentication_token_to_users.rb

@@ -1,4 +1,4 @@
-class AddAuthenticationTokenToUsers < ActiveRecord::Migration
+class AddAuthenticationTokenToUsers < ActiveRecord::Migration[4.2]
   def change
     add_column :users, :authentication_token, :string, limit: 30
     add_index :users, :authentication_token, unique: true