Code for protocol repository scinote table elements view

app/controllers/protocols_controller.rb

@@ -1091,10 +1091,61 @@ class ProtocolsController < ApplicationController
           newj[i.to_s]['description'] += pio_stp_19(key['source_data'])
         end # case end
       end # finished looping over step components
+      newj[i.to_s]['tables'], table_str = protocolsio_string_to_table_element(
+        newj[i.to_s]['description']
+      )
+      newj[i.to_s]['description'] = table_str
     end # steps
     newj
   end
 
+  def protocolsio_string_to_table_element(description_string)
+    description_string.delete! "\n"
+    description_string.delete! "\t"
+    description_string.delete! "\r"
+    description_string.delete! "\f"
+    table_whole_regex = %r{(<table\b[^>]*>.*?<\/table>)}m
+    table_regex = %r{<table\b[^>]*>(.*?)<\/table>}m
+    tr_regex = %r{<tr\b[^>]*>(.*?)<\/tr>}m
+    td_regex = %r{<td\b[^>]*>(.*?)<\/td>}m
+    table_pattern_array = description_string.scan(table_whole_regex)
+    string_without_tables = description_string
+    table_pattern_array.each do |table_pattern|
+      string_without_tables = string_without_tables.gsub(
+        table_pattern[0],
+        t('protocols.protocols_io_import.comp_append.table_moved').html_safe
+      )
+    end
+    tables = {}
+    table_counter = 0
+    table_strings = description_string.scan(table_regex)
+    table_strings.each do |table|
+      tables[table_counter.to_s] = {}
+      tr_counter = 0
+      tr_strings = table[0].scan(tr_regex)
+      contents = {}
+      contents['data'] = []
+      tr_strings.each do |tr|
+        td_counter = 0
+        td_strings = tr[0].scan(td_regex)
+        contents['data'][tr_counter] = []
+        td_strings.each do |td|
+          contents['data'][tr_counter].push(td[0])
+          td_counter += 1
+          break if td_counter >= 5
+        end
+        tr_counter += 1
+      end
+      tables[table_counter.to_s]['contents'] = Base64.encode64(
+        contents.to_s.sub('=>', ':')
+      )
+      tables[table_counter.to_s]['name'] = nil
+      table_counter += 1
+    end
+    # return string_without_tables, tables
+    return tables, string_without_tables
+  end
+
   def move_protocol(action)
     rollbacked = false
     results = []

app/views/protocols/import_export/_import_json_protocol_p_desc.html.erb

@@ -28,10 +28,6 @@
   <strong><%= t('protocols.protocols_io_import.preview.guideln') %></strong>
   <%= sanitize_input(json_object['guidelines'].html_safe) %><br>
   <% end %>
-  <% if json_object['link'].present? %>
-  <strong><%= t('protocols.protocols_io_import.preview.p_link') %></strong>
-  <%= sanitize_input(json_object['link'].html_safe) %><br>
-  <% end %>
   <% if json_object['manuscript_citation'].present? %>
   <strong><%= t('protocols.protocols_io_import.preview.manu_cit') %></strong>
   <%= sanitize_input(json_object['manuscript_citation'].html_safe) %><br>
@@ -58,6 +54,10 @@
   <%= sanitize_input(tag['tag_name'])+' , ' %><br>
   <% end %>
   <% end %>
+  <% if json_object['link'].present? %>
+  <strong><%= t('protocols.protocols_io_import.preview.p_link') %></strong>
+  <%= sanitize_input(json_object['link'].html_safe) %><br>
+  <% end %>
 </div>
 </div>
 </div>

config/locales/en.yml

@@ -1390,7 +1390,7 @@ en:
         b_s_p: "Before starting protocol information:"
         warn: "Protocol warning:"
         guideln: "Guidelines:"
-        p_link: "Supplied link:"
+        p_link: "Link:"
         s_nobr_link: "Link:"
         s_link: "Link:"
         s_desc: "Description:"
@@ -1409,6 +1409,7 @@ en:
         key_wrd: "Keywords:"
         tags: "Tags:"
       comp_append:
+        table_moved: "<br><strong>There was a table here, it was moved to the end of this step. </strong>"
         missing_step: "Step"
         missing_desc: "Description missing"
         general_link: "<br>Link: "
@@ -1426,7 +1427,7 @@ en:
           desc: "<br>Description: "
           os: "<br>OS name , OS version: "
         sub_protocol:
-          title: "<br><strong>This protocol also contains an attached sub-protocol: </strong>"
+          title: "<br><strong>This step also contains an attached sub-protocol: </strong>"
           author: "<br>Author: "
         safety_infor:
           title: "<br><strong>Safety information: </strong>"