rename migrations part 1

db/migrate/20150713063224_create_organizations.rb

@@ -1,11 +1,11 @@
 class CreateOrganizations < ActiveRecord::Migration
   def change
-    create_table :organizations do |t|
+    create_table :teams do |t|
       ## General info
       t.string :name, null: false
 
       t.timestamps null: false
     end
-    add_index :organizations, :name, unique: true
+    add_index :teams, :name, unique: true
   end
 end

db/migrate/20150713071921_create_projects.rb

@@ -4,10 +4,10 @@ class CreateProjects < ActiveRecord::Migration
       t.string :name, null: false
       t.column :visibility, :integer, null: false, default: 0
       t.datetime :due_date
-      t.integer :organization_id, null: false
+      t.integer :team_id, null: false
 
       t.timestamps null: false
     end
-    add_foreign_key :projects, :organizations
+    add_foreign_key :projects, :teams
   end
 end

db/migrate/20150715122019_create_logs.rb

@@ -1,9 +1,9 @@
 class CreateLogs < ActiveRecord::Migration
   def change
     create_table :logs do |t|
-      t.integer :organization_id, null: false
+      t.integer :team_id, null: false
-      t.string :message, null:false
+      t.string :message, null: false
     end
-    add_foreign_key :logs, :organizations
+    add_foreign_key :logs, :teams
   end
 end

db/migrate/20150716062801_create_samples.rb

@@ -5,13 +5,13 @@ class CreateSamples < ActiveRecord::Migration
 
       # Foreign keys
       t.integer :user_id, null: false
-      t.integer :organization_id, null: false
+      t.integer :team_id, null: false
 
       t.timestamps null: false
     end
     add_foreign_key :samples, :users
-    add_foreign_key :samples, :organizations
+    add_foreign_key :samples, :teams
     add_index :samples, :user_id
-    add_index :samples, :organization_id
+    add_index :samples, :team_id
   end
 end

db/migrate/20150820120553_create_sample_groups.rb

@@ -2,12 +2,12 @@ class CreateSampleGroups < ActiveRecord::Migration
   def change
     create_table :sample_groups do |t|
       t.string :name, null: false
-      t.string :color, null: false, default: "#ff0000"
+      t.string :color, null: false, default: '#ff0000'
 
-      t.integer :organization_id, null: false
+      t.integer :team_id, null: false
       t.timestamps null: false
     end
-    add_foreign_key :sample_groups, :organizations
+    add_foreign_key :sample_groups, :teams
-    add_index :sample_groups, :organization_id
+    add_index :sample_groups, :team_id
   end
 end

db/migrate/20150827130647_create_custom_fields.rb

@@ -4,14 +4,14 @@ class CreateCustomFields < ActiveRecord::Migration
       t.string :name, null: false
 
       t.integer :user_id, null: false
-      t.integer :organization_id, null: false
+      t.integer :team_id, null: false
 
       t.timestamps null: false
     end
     add_foreign_key :custom_fields, :users
-    add_foreign_key :custom_fields, :organizations
+    add_foreign_key :custom_fields, :teams
 
     add_index :custom_fields, :user_id
-    add_index :custom_fields, :organization_id
+    add_index :custom_fields, :team_id
   end
 end

db/migrate/20151005122041_add_created_by_to_assets.rb

@@ -1,7 +1,7 @@
 class AddCreatedByToAssets < ActiveRecord::Migration
   def change
-    tables = [:assets, :checklists, :checklist_items, :my_module_groups, 
+    tables = [:assets, :checklists, :checklist_items, :my_module_groups,
-      :my_module_tags, :my_modules, :organizations, :projects,
+      :my_module_tags, :my_modules, :teams, :projects,
        :sample_groups, :sample_types, :tables, :tags]
 
     tables.each do |table_name|
@@ -9,8 +9,8 @@ class AddCreatedByToAssets < ActiveRecord::Migration
       add_index table_name, :created_by_id
     end
 
-    tables = [:assets, :checklists, :checklist_items, :comments, 
+    tables = [:assets, :checklists, :checklist_items, :comments,
-      :custom_fields, :my_modules, :organizations, :projects, 
+      :custom_fields, :my_modules, :teams, :projects,
       :reports, :results, :sample_groups, :sample_types, :samples,
       :steps, :tables, :tags]
 
@@ -29,8 +29,7 @@ class AddCreatedByToAssets < ActiveRecord::Migration
       add_column table_name, :restored_on, :datetime
     end
 
-    tables = [:sample_my_modules, :user_my_modules, 
+    tables = [:sample_my_modules, :user_my_modules, :user_teams, :user_projects]
-      :user_organizations, :user_projects]
     tables.each do |table_name|
       add_column table_name, :assigned_by_id, :integer
       add_index table_name, :assigned_by_id

db/migrate/20151021085335_add_search_query_indexes.rb

@@ -3,9 +3,9 @@ include DatabaseHelper
 
 class AddSearchQueryIndexes < ActiveRecord::Migration
   def up
-    add_index :projects, :organization_id
+    add_index :projects, :team_id
-    add_index :user_organizations, :user_id
+    add_index :user_teams, :user_id
-    add_index :user_organizations, :organization_id
+    add_index :user_teams, :team_id
     add_index :user_projects, :user_id
     add_index :user_projects, :project_id
     add_index :tags, :project_id
@@ -28,9 +28,9 @@ class AddSearchQueryIndexes < ActiveRecord::Migration
   end
 
   def down
-    remove_index :projects, :organization_id
+    remove_index :projects, :team_id
-    remove_index :user_organizations, :user_id
+    remove_index :user_teams, :user_id
-    remove_index :user_organizations, :organization_id
+    remove_index :user_teams, :team_id
     remove_index :user_projects, :user_id
     remove_index :user_projects, :project_id
     remove_index :tags, :project_id

db/migrate/20151022123530_remove_unique_organization_name_index.rb

@@ -1,11 +1,11 @@
 class RemoveUniqueOrganizationNameIndex < ActiveRecord::Migration
   def up
-    remove_index :organizations, :name
+    remove_index :teams, :name
-    add_index :organizations, :name
+    add_index :teams, :name
   end
 
   def down
-    remove_index :organizations, :name
+    remove_index :teams, :name
-    add_index :organizations, :name, unique: true
+    add_index :teams, :name, unique: true
   end
 end

db/migrate/20151214110800_add_organization_management_support.rb

@@ -3,34 +3,34 @@ include DatabaseHelper
 
 class AddOrganizationManagementSupport < ActiveRecord::Migration
   def up
-    # Add nullable description to organization
+    # Add nullable description to team
-    add_column :organizations, :description, :string
+    add_column :teams, :description, :string
 
     # Add estimated file size to asset (in B)
     add_column :assets, :estimated_size, :integer,
       default: 0
     change_column_null :assets, :estimated_size, false
 
-    # Add space taken to organization (in B!)
+    # Add space taken to team (in B!)
-    add_column :organizations, :space_taken, :integer, limit: 5,
+    add_column :teams, :space_taken, :integer, limit: 5,
-               default: Constants::MINIMAL_ORGANIZATION_SPACE_TAKEN
+               default: Constants::MINIMAL_TEAM_SPACE_TAKEN
-    change_column_null :organizations, :space_taken, false
+    change_column_null :teams, :space_taken, false
 
     # Add reference to private user
-    add_column :organizations, :private_user_id, :integer
+    add_column :teams, :private_user_id, :integer
-    add_index :organizations, :private_user_id
+    add_index :teams, :private_user_id
-    add_foreign_key :organizations, :users, column: :private_user_id
+    add_foreign_key :teams, :users, column: :private_user_id
   end
 
   def down
-    remove_column :organizations, :description
+    remove_column :teams, :description
 
     remove_column :assets, :estimated_size
 
-    remove_column :organizations, :space_taken
+    remove_column :teams, :space_taken
 
-    remove_foreign_key :organizations, column: :private_user_id
+    remove_foreign_key :teams, column: :private_user_id
-    remove_index :organizations, :private_user_id
+    remove_index :teams, :private_user_id
-    remove_column :organizations, :private_user_id
+    remove_column :teams, :private_user_id
   end
 end

db/migrate/20151215103642_add_foreign_keys_to_tables.rb

@@ -1,7 +1,7 @@
 class AddForeignKeysToTables < ActiveRecord::Migration
   def change
-    tables = [:assets, :checklists, :checklist_items, :my_module_groups, 
+    tables = [:assets, :checklists, :checklist_items, :my_module_groups,
-      :my_module_tags, :my_modules, :organizations, :projects,
+      :my_module_tags, :my_modules, :teams, :projects,
        :sample_groups, :sample_types, :tables, :tags]
 
     tables.each do |table_name|
@@ -9,7 +9,7 @@ class AddForeignKeysToTables < ActiveRecord::Migration
     end
 
     tables = [:assets, :checklists, :checklist_items, :comments,
-      :custom_fields, :my_modules, :organizations, :projects,
+      :custom_fields, :my_modules, :teams, :projects,
       :reports, :results, :sample_groups, :sample_types, :samples,
       :steps, :tables, :tags]
 
@@ -25,7 +25,7 @@ class AddForeignKeysToTables < ActiveRecord::Migration
     end
 
     tables = [:sample_my_modules, :user_my_modules,
-      :user_organizations, :user_projects]
+      :user_teams, :user_projects]
     tables.each do |table_name|
       add_foreign_key table_name, :users, column: :assigned_by_id
     end

db/migrate/20160118114850_remove_private_organizations.rb

@@ -1,13 +1,13 @@
 class RemovePrivateOrganizations < ActiveRecord::Migration
   def up
-    remove_foreign_key :organizations, column: :private_user_id
+    remove_foreign_key :teams, column: :private_user_id
-    remove_index :organizations, :private_user_id
+    remove_index :teams, :private_user_id
-    remove_column :organizations, :private_user_id
+    remove_column :teams, :private_user_id
   end
 
   def down
-    add_column :organizations, :private_user_id, :integer
+    add_column :teams, :private_user_id, :integer
-    add_index :organizations, :private_user_id
+    add_index :teams, :private_user_id
-    add_foreign_key :organizations, :users, column: :private_user_id
+    add_foreign_key :teams, :users, column: :private_user_id
   end
 end

db/migrate/20160205192344_migrate_organizations_structure.rb

@@ -6,39 +6,39 @@ class MigrateOrganizationsStructure < ActiveRecord::Migration
       asset.update(file_present: true)
     end
 
-    # Calculate organizations' taken space
+    # Calculate teams' taken space
-    Organization.find_each do |org|
+    Team.find_each do |team|
-      org.calculate_space_taken
+      team.calculate_space_taken
-      org.save
+      team.save
     end
 
-    # Finally, the trickiest task: Re-define organizations
+    # Finally, the trickiest task: Re-define teams
-    demo_org = Organization.find_by(name: "Demo organization")
+    demo_team = Team.find_by(name: "Demo team")
-    if demo_org
+    if demo_team
-      demo_org.user_organizations.each do |uo|
+      demo_team.user_teams.each do |uo|
         uo.destroy
       end
     end
-    Organization.find_each do |org|
+    Team.find_each do |team|
-      user = org.users.first
+      user = team.users.first
-      org.update(created_by: user)
+      team.update(created_by: user)
     end
 
-    UserOrganization.find_each do |uo|
+    UserTeam.find_each do |uo|
       uo.update(role: 2)
     end
   end
 
   def down
-    # We cannot re-assign users to demo organization or re-update
+    # We cannot re-assign users to demo team or re-update
-    # their previous user-organization roles
+    # their previous user-team roles
 
-    # But we can remove created_by field from organizations
+    # But we can remove created_by field from teams
-    Organization.find_each do |org|
+    Team.find_each do |team|
-      org.update(created_by: nil)
+      team.update(created_by: nil)
     end
 
-    # Resetting calculated assets & organizations' space
+    # Resetting calculated assets & teams' space
     # to 0 doesn't make much sense even when downgrading migration
   end
 end

db/migrate/20160407063323_create_protocols.rb

@@ -7,7 +7,7 @@ class CreateProtocols < ActiveRecord::Migration
       t.text :description
       t.integer :added_by_id
       t.integer :my_module_id
-      t.integer :organization_id, null: false
+      t.integer :team_id, null: false
       t.integer :protocol_type, null: false, default: 0
       t.integer :parent_id
       t.datetime :parent_updated_at
@@ -20,7 +20,7 @@ class CreateProtocols < ActiveRecord::Migration
     end
     add_foreign_key :protocols, :users, column: :added_by_id
     add_foreign_key :protocols, :my_modules, column: :my_module_id
-    add_foreign_key :protocols, :organizations, column: :organization_id
+    add_foreign_key :protocols, :teams, column: :team_id
     add_foreign_key :protocols, :protocols, column: :parent_id
     add_foreign_key :protocols, :users, column: :archived_by_id
     add_foreign_key :protocols, :users, column: :restored_by_id
@@ -29,7 +29,7 @@ class CreateProtocols < ActiveRecord::Migration
     add_index :protocols, :description
     add_index :protocols, :added_by_id
     add_index :protocols, :my_module_id
-    add_index :protocols, :organization_id
+    add_index :protocols, :team_id
     add_index :protocols, :parent_id
     add_index :protocols, :archived_by_id
     add_index :protocols, :restored_by_id
@@ -59,7 +59,7 @@ class CreateProtocols < ActiveRecord::Migration
     MyModule.find_each do |my_module|
       protocol = Protocol.new(
         my_module_id: my_module.id,
-        organization_id: my_module.project.organization.id,
+        team_id: my_module.project.team.id,
         protocol_type: 0
       )
       protocol.save(validate: false)
@@ -94,7 +94,7 @@ class CreateProtocols < ActiveRecord::Migration
     remove_column :steps, :protocol_id
 
     # Simply drop the rest of the protocols
-    # (the ones that are organization-wide)
+    # (the ones that are team-wide)
 
     remove_index :protocol_protocol_keywords, column: :protocol_id
     remove_index :protocol_protocol_keywords, column: :protocol_keyword_id
@@ -110,13 +110,13 @@ class CreateProtocols < ActiveRecord::Migration
     remove_index :protocols, column: :description
     remove_index :protocols, column: :added_by_id
     remove_index :protocols, column: :my_module_id
-    remove_index :protocols, column: :organization_id
+    remove_index :protocols, column: :team_id
     remove_index :protocols, column: :parent_id
     remove_index :protocols, column: :archived_by_id
     remove_index :protocols, column: :restored_by_id
     remove_foreign_key :protocols, column: :added_by_id
     remove_foreign_key :protocols, :my_modules
-    remove_foreign_key :protocols, :organizations
+    remove_foreign_key :protocols, :teams
     remove_foreign_key :protocols, column: :parent_id
     remove_foreign_key :protocols, column: :archived_by_id
     remove_foreign_key :protocols, column: :restored_by_id

db/migrate/20160429102200_add_organization_id_to_protocol_keywords.rb

@@ -1,25 +1,25 @@
 class AddOrganizationIdToProtocolKeywords < ActiveRecord::Migration
   def up
-    add_column :protocol_keywords, :organization_id, :integer
+    add_column :protocol_keywords, :team_id, :integer
-    add_foreign_key :protocol_keywords, :organizations, column: :organization_id
+    add_foreign_key :protocol_keywords, :teams, column: :team_id
-    add_index :protocol_keywords, :organization_id
+    add_index :protocol_keywords, :team_id
 
-    # Set organization to all protocol keywords
+    # Set team to all protocol keywords
     ProtocolKeyword.find_each do |kw|
       if kw.protocols.count == 0
         kw.destroy
       else
-        kw.update(organization_id: kw.protocols.first.organization_id)
+        kw.update(team_id: kw.protocols.first.team_id)
       end
     end
 
     # Finally, set the column to null = false
-    change_column_null :protocol_keywords, :organization_id, false
+    change_column_null :protocol_keywords, :team_id, false
   end
 
   def down
-    remove_index :protocol_keywords, column: :organization_id
+    remove_index :protocol_keywords, column: :team_id
-    remove_foreign_key :protocol_keywords, column: :organization_id
+    remove_foreign_key :protocol_keywords, column: :team_id
-    remove_column :protocol_keywords, :organization_id
+    remove_column :protocol_keywords, :team_id
   end
 end

db/migrate/20160513165000_rename_duplicate_columns.rb

@@ -1,14 +1,13 @@
 class RenameDuplicateColumns < ActiveRecord::Migration
-
+  require 'set'
-  require 'set';
 
   def up
-    # Update duplicate or prohibited column names with extensions 
+    # Update duplicate or prohibited column names with extensions
 
-    Organization.find_each do |org|
+    Team.find_each do |team|
       names = Set.new ["Assigned", "Sample name", "Sample type", "Sample group", "Added on", "Added by"]
 
-      CustomField.where(organization: org).find_each do |column|
+      CustomField.where(team: team).find_each do |column|
         if names.include?(column.name)
           name = column.name
           i = 0
@@ -16,7 +15,7 @@ class RenameDuplicateColumns < ActiveRecord::Migration
             name = column.name
             i = i+1
             suffix = "(" + i.to_s + ")"
-            if (suffix.length + name.length > 50) 
+            if (suffix.length + name.length > 50)
               name = name[0..(49-suffix.length)]
             end
             name = name + suffix
@@ -32,4 +31,4 @@ class RenameDuplicateColumns < ActiveRecord::Migration
   def down
     # We can't really rollback this change
   end
-end
+end

db/migrate/20161011074804_add_current_organization_to_user.rb

@@ -1,16 +1,16 @@
 class AddCurrentOrganizationToUser < ActiveRecord::Migration
   def up
-    add_column :users, :current_organization_id, :integer
+    add_column :users, :current_team_id, :integer
-    add_foreign_key :users, :organizations, column: :current_organization_id
+    add_foreign_key :users, :teams, column: :current_team_id
 
     User.find_each do |user|
-      if user.organizations.count > 0
+      if user.teams.count > 0
-        user.update(current_organization_id: user.organizations.first.id)
+        user.update(current_team_id: user.teams.first.id)
       end
     end
   end
 
   def down
-    remove_column :users, :current_organization_id
+    remove_column :users, :current_team_id
   end
 end

db/migrate/20161123161514_create_samples_tables.rb

@@ -5,28 +5,30 @@ class CreateSamplesTables < ActiveRecord::Migration
               default: SampleDatatable::SAMPLES_TABLE_DEFAULT_STATE
       # Foreign keys
       t.references :user, null: false
-      t.references :organization, null: false
+      t.references :team, null: false
 
       t.timestamps null: false
     end
     add_index :samples_tables, :user_id
-    add_index :samples_tables, :organization_id
+    add_index :samples_tables, :team_id
 
     User.find_each do |user|
-      next unless user.organizations
+      next unless user.teams
-      user.organizations.find_each do |org|
+      user.teams.find_each do |team|
-        org_status = SampleDatatable::SAMPLES_TABLE_DEFAULT_STATE.deep_dup
+        team_status = SampleDatatable::SAMPLES_TABLE_DEFAULT_STATE.deep_dup
-        next unless org.custom_fields
+        next unless team.custom_fields
-        org.custom_fields.each_with_index do |_, index|
+        team.custom_fields.each_with_index do |_, index|
-          org_status['columns'] << { 'visible' => true,
+          team_status['columns'] << { 'visible' => true,
-                                     'search' => { 'search' => '',
+                                      'search' => {
-                                                   'smart' => true,
+                                        'search' => '',
-                                                   'regex' => false,
+                                        'smart' => true,
-                                                   'caseInsensitive' => true } }
+                                        'regex' => false,
-          org_status['ColReorder'] << (7 + index)
+                                        'caseInsensitive' => true
+                                      } }
+          team_status['ColReorder'] << (7 + index)
         end
 
-        SamplesTable.create(user: user, organization: org, status: org_status)
+        SamplesTable.create(user: user, team: team, status: team_status)
       end
     end
   end

db/migrate/20161125153600_rename_non_unique_sample_types_groups.rb

@@ -1,9 +1,9 @@
 class RenameNonUniqueSampleTypesGroups < ActiveRecord::Migration
   def up
-    Organization.find_each do |org|
+    Team.find_each do |team|
       st_ids = []
-      org.sample_types.find_each do |st|
+      team.sample_types.find_each do |st|
-        next unless SampleType.where(organization_id: org.id)
+        next unless SampleType.where(team_id: team.id)
                               .where(name: st.name)
                               .count > 1
         st_ids << st.id
@@ -20,10 +20,10 @@ class RenameNonUniqueSampleTypesGroups < ActiveRecord::Migration
       end
     end
 
-    Organization.find_each do |org|
+    Team.find_each do |team|
       sg_ids = []
-      org.sample_groups.find_each do |sg|
+      team.sample_groups.find_each do |sg|
-        next unless SampleGroup.where(organization_id: org.id)
+        next unless SampleGroup.where(team_id: team.id)
                                .where(name: sg.name)
                                .count > 1
         sg_ids << sg.id