mirror of
https://github.com/scinote-eln/scinote-web.git
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Merge pull request #866 from biosistemika/protocols-io-import
Protocols io import
This commit is contained in:
mlorb
GitHub
commit
cd6799d571
14 changed files with 1067 additions and 221 deletions
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@ -337,6 +337,19 @@ a {
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border-color: darken($color-theme-secondary, 10%);
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}
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}
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.btn-link-alt {
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border-radius: 4px;
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cursor: pointer;
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margin-right: 5px;
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padding: 3px;
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}
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.btn-invis-file {
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display: none;
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opacity: 0;
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position: absolute;
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z-index: -1;
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}
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.btn-open-file {
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position: relative;
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@ -1259,8 +1272,35 @@ ul.content-module-activities {
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position: relative;
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top: -10px;
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}
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}
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// Import json protocols.io protocol modal
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#modal-import-json-protocol-preview .modal-dialog {
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width: 70%;
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}
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.import-protocols-modal-preview-container-json {
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height: 300px;
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overflow-x: scroll;
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overflow-y: scroll;
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width: 100%;
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.eln-table {
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height: 21px;
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text-align: center;
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}
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.badge-preview {
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background-color: $color-silver;
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border-radius: 2em;
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float: left;
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font-size: 20px;
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padding: 5px 14px;
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position: relative;
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top: -10px;
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}
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}
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/* Steps and Results */
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#steps {
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background-image: url("data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAACgAAAABCAYAAACsXeyTAAAAIUlEQVQImWNgoD5gZGBgMILSjKRo/P//vwiSGQwMDAwMAEnaA0jgHoquAAAAAElFTkSuQmCC");
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@ -1796,6 +1836,15 @@ textarea.textarea-sm {
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-webkit-padding-before: 0;
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-webkit-padding-after: 0;
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}
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.btn.btn-default-link {
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border: 0;
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height: 100%;
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min-height: 34px;
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padding: 0;
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-webkit-padding-after: 0;
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-webkit-padding-before: 0;
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}
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}
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}
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@ -2002,6 +2051,7 @@ th.custom-field .modal-tooltiptext {
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padding: 3px;
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}
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.btn:last-child {
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margin-right: 20px;
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}
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File diff suppressed because it is too large
Load diff
44
app/helpers/protocols_io_table_helper.rb
Normal file
44
app/helpers/protocols_io_table_helper.rb
Normal file
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@ -0,0 +1,44 @@
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module ProtocolsIoTableHelper
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def protocolsio_string_to_table_element(description_string)
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string_without_tables = string_html_table_remove(description_string)
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table_regex = %r{<table\b[^>]*>(.*?)<\/table>}m
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tr_regex = %r{<tr\b[^>]*>(.*?)<\/tr>}m
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td_regex = %r{<td\b[^>]*>(.*?)<\/td>}m
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tables = {}
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table_strings = description_string.scan(table_regex)
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table_strings.each_with_index do |table, table_counter|
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tables[table_counter.to_s] = {}
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tr_strings = table[0].scan(tr_regex)
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contents = {}
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contents['data'] = []
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tr_strings.each_with_index do |tr, tr_counter|
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td_strings = tr[0].scan(td_regex)
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contents['data'][tr_counter] = []
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td_strings.each do |td|
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td_stripped = ActionController::Base.helpers.strip_tags(td[0])
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contents['data'][tr_counter].push(td_stripped)
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end
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end
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tables[table_counter.to_s]['contents'] = Base64.encode64(
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contents.to_s.sub('=>', ':')
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)
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tables[table_counter.to_s]['name'] = nil
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end
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# return string_without_tables, tables
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return tables, string_without_tables
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end
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def string_html_table_remove(description_string)
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description_string.remove!("\n", "\t", "\r", "\f")
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table_whole_regex = %r{(<table\b[^>]*>.*?<\/table>)}m
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table_pattern_array = description_string.scan(table_whole_regex)
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string_without_tables = description_string
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table_pattern_array.each do |table_pattern|
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string_without_tables = string_without_tables.gsub(
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table_pattern[0],
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t('protocols.protocols_io_import.comp_append.table_moved').html_safe
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)
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end
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string_without_tables
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end
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end
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@ -45,7 +45,6 @@ module ProtocolsImporter
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def populate_protocol(protocol, protocol_json, user, team)
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protocol.reload
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asset_ids = []
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step_pos = 0
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# Check if protocol has steps
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@ -0,0 +1,32 @@
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<div
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class="modal fade"
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id="modal-import-json-protocol"
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tabindex="-1"
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role="dialog">
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<div class="modal-dialog" role="document">
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<div class="modal-content">
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<div class="modal-header">
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<button type="button" class="close" data-dismiss="modal" aria-label="Close">
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<span aria-hidden="true">×</span>
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</button>
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<h4 class="modal-title"><%= t('protocols.index.modal_import_json_title') %></h4>
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<%= t("protocols.index.modal_import_json_notice") %>
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</div>
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<%= form_tag({ action: "protocolsio_import_create"}, id:"protocols_io_form",
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format: :json, multipart: true,remote: true,:method => "post") do %>
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<div class="modal-body">
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<%= file_field_tag 'json_file', accept: '.txt' %>
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</div>
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<div class="modal-footer">
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<button type="button" class="btn btn-default" data-dismiss="modal"><%= t('general.cancel')%></button>
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<%= submit_tag t('protocols.index.modal_import_json_upload'), class: "btn
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btn-default" %>
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</div>
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<% end %>
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</div>
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</div>
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</div>
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@ -0,0 +1,103 @@
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<div style="display: block;">
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<hr>
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<td>
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<div class="badge-num">
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<span class="badge-preview bg-primary size-digit-1">
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<b data-val="position"><%= 1 %></b>
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</span>
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<span class="step-panel-collapse-link" data-toggle="collapse">
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<span class="glyphicon collapse-step-icon glyphicon-collapse-up"></span>
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<strong data-val="name"><%= 'Protocol info' %></strong>
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</span>
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</div>
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<br>
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<div class="tab-content">
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<div class="tab-pane active" role="tabpanel">
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<div data-val="description" class="ql-editor">
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<br>
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<% prot_info_string = '' %>
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<% protocol_table_elements_array = [] %>
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<% if json_object['before_start'].present? %>
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<% prot_info_string += (json_object['before_start']) %>
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<strong><%= t('protocols.protocols_io_import.preview.b_s_p') %></strong>
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<%= sanitize_input(string_html_table_remove(json_object['before_start']).html_safe) %><br>
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<% end %>
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<% if json_object['warning'].present? %>
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<% prot_info_string += (json_object['warning']) %>
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<strong><%= t('protocols.protocols_io_import.preview.warn') %></strong>
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<%= sanitize_input(string_html_table_remove(json_object['warning']).html_safe) %><br>
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<% end %>
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<% if json_object['guidelines'].present? %>
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<% prot_info_string += (json_object['guidelines']) %>
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<strong><%= t('protocols.protocols_io_import.preview.guideln') %></strong>
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<%= sanitize_input(string_html_table_remove(json_object['guidelines']).html_safe) %><br>
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<% end %>
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<% if json_object['manuscript_citation'].present? %>
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<% prot_info_string += (json_object['manuscript_citation']) %>
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<strong><%= t('protocols.protocols_io_import.preview.manu_cit') %></strong>
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<%= sanitize_input(string_html_table_remove(json_object['manuscript_citation']).html_safe) %><br>
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<% end %>
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<% if json_object['publish_date'].present? %>
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<strong><%= t('protocols.protocols_io_import.preview.pbl_date') %></strong>
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<%= sanitize_input(json_object['publish_date']) %><br>
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<% end %>
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<% if json_object['vendor_name'].present? %>
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<strong><%= t('protocols.protocols_io_import.preview.vnd_name') %></strong>
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<%= sanitize_input(json_object['vendor_name']) %><br>
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<% end %>
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<% if json_object['vendor_link'].present? %>
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<strong><%= t('protocols.protocols_io_import.preview.vnd_link') %></strong>
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<%= sanitize_input(json_object['vendor_link'].html_safe) %><br>
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<% end %>
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<% if json_object['keywords'].present? %>
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<strong><%= t('protocols.protocols_io_import.preview.key_wrd') %></strong>
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<%= sanitize_input(json_object['keywords']) %><br>
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<% end %>
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<% if json_object['tags'].present? %>
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<strong><%= t('protocols.protocols_io_import.preview.tags') %></strong>
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<% json_object['tags'].each do |tag| %>
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<%= sanitize_input(tag['tag_name'])+' , ' %><br>
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<% end %>
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<% end %>
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<% if json_object['link'].present? %>
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<strong><%= t('protocols.protocols_io_import.preview.p_link') %></strong>
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<%= sanitize_input(json_object['link'].html_safe) %><br>
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<% end %>
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<% tables, garbage = protocolsio_string_to_table_element(prot_info_string) %>
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<% if tables.present? %>
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<br><hr><br>
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<% end %>
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<% table_count = 0 %>
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<% tables.each do |index, table| %>
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<% table_hash = JSON.parse((Base64.decode64(table['contents']))) %>
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<% pio_table_id = "pio_table_prot_info_"+table_count.to_s %>
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<% protocol_table_elements_array.push([pio_table_id,table_hash['data']]) %>
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<div id="<%=pio_table_id%>" ></div>
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<% table_count += 1 %>
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<% end %>
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</div>
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</div>
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</div>
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</div>
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<script type="text/javascript">
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$('#modal-import-json-protocol-preview').on('shown.bs.modal', function (e) {
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var javascript_table_elements_p = <%=raw sanitize_input(protocol_table_elements_array.to_json) %>
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for(var j=0;j<javascript_table_elements_p.length;j++)
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{
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var target = document.getElementById(javascript_table_elements_p[j][0]);
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var hot = new Handsontable(target, {
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data: javascript_table_elements_p[j][1],
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startRows: <%= Constants::HANDSONTABLE_INIT_ROWS_CNT %>,
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startCols: <%= Constants::HANDSONTABLE_INIT_COLS_CNT %>,
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rowHeaders: true,
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colHeaders: true,
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fillHandle: false,
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formulas: true,
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readOnly: true
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});
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}
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})
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</script>
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@ -0,0 +1,96 @@
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<%= form_for(@protocol, :url => url_for(:controller => 'protocols',
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:action=>'protocolsio_import_save'),method: :post,format: :javascript,
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remote: true, :html=> { :id => "protocolsio-import-form" }) do |f| %>
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<%= hidden_field_tag :json_object, JSON.generate(@json_object) %>
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<% if URI.parse(request.referrer).query %>
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<%= hidden_field_tag :type,CGI.parse(URI.parse(request.referrer).query).fetch('type') %>
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<% else %>
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<%= hidden_field_tag :type,'public' %>
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<% end %>
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<!--Get the type of protocol to import (private, public) from the url -->
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<div
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id="modal-import-json-protocol-preview"
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class="modal fade"
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role="dialog"
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tabindex="-1">
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<div class="modal-dialog">
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<div class="modal-content">
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<div class="modal-header">
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<button type="button" class="close" data-dismiss="modal">×</button>
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<h4 class="modal-title" data-role="header-import-into-protocol_protocols_io"><%=
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t('protocols.import_export.import_modal.title_import_into_protocol_protocols_io')
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%></h4>
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</div>
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<div class="modal-body">
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<!-- General protocol info -->
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<div class="form-group">
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<label><%= t('protocols.import_export.import_modal.name_label') %></label>
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<%= f.text_field :name, :value => @json_object['protocol_name'], class:
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"form-control" %>
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</div>
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<div class="form-group">
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<label>
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<span class="glyphicon glyphicon-user">
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</span> <%= t('protocols.import_export.import_modal.authors_label') %>
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</label>
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<%= f.text_field :authors, :value => @json_object['full_name'], class:
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"form-control" %>
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</div>
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<div class="form-group">
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<label><%= t('protocols.import_export.import_modal.description_label') %></label>
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<%= f.text_area :description_notice, :value => t('protocols.protocols_io_import.import_description_notice'), class:
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"form-control",readonly: true %>
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</div>
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<div class="form-group">
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<div class="row">
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<div class="col-xs-4">
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<label><%= t('protocols.import_export.import_modal.created_at_label') %></label>
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<% display_created_at=Time.at(@json_object['created_on'].to_i) %>
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<%= f.text_field :created_at, :value => display_created_at.to_s,
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readonly: true, class: "form-control" %>
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</div>
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<div class="col-xs-4">
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<label><%= t('protocols.import_export.import_modal.updated_at_label') %></label>
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<% display_last_modified=Time.at(@json_object['last_modified'].to_i) %>
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<%= f.text_field :last_modified, :value =>
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display_last_modified.to_s,readonly: true, class:
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"form-control" %>
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</div>
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</div>
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</div>
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<!-- Preview title -->
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<div>
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<h2 style="display: inline;"><%= t('protocols.import_export.import_modal.preview_title') %></h2>
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<h3 style="display: none;" data-role="title-position"></h3>
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</div>
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<!-- Preview scroller -->
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<div
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class="import-protocols-modal-preview-container-json"
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data-role="preview-container">
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<!-- Partial -->
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<%= render partial: "protocols/import_export/import_json_protocol_p_desc.html.erb", locals: {json_object: @json_object} %>
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<%= render partial: "protocols/import_export/import_json_protocol_s_desc.html.erb", locals: {json_object: @json_object} %>
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</div>
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</div>
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<div class="modal-footer">
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<button type="button" class="btn btn-default" data-dismiss="modal"><%= t('general.cancel') %></button>
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<%= f.submit t('protocols.import_export.import_modal.import'),class: "btn
|
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btn-primary" %>
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<% end %>
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</div>
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</div>
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</div>
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</div>
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@ -0,0 +1,148 @@
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<% whitelist_simple=['1','6','17'] %>
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<% whitelist_complex=['8','9','15','18','19','20']%>
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<% step_table_elements_array = [] %>
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<% json_object['steps'].each_with_index do |step,counter_orig| %>
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<% counter = counter_orig + 2 %>
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<div style="display: block;">
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||||
<hr>
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<td>
|
||||
<div class="badge-num">
|
||||
<span class="badge-preview bg-primary size-digit-1">
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<b data-val="position"><%= (counter) %></b>
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</span>
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<span class="step-panel-collapse-link" data-toggle="collapse">
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<span class="glyphicon collapse-step-icon glyphicon-collapse-up"></span>
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<% title = nil %>
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<% step['components'].each do |key1,value1| #finding section (title of step) %>
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<% key1 = value1 if value1.class == Hash %>
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<% if(key1['component_type_id']=='6') %>
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<% title = sanitize_input(key1['data']) if key1['data'].present? %>
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<% end %>
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<% end %>
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<% title ||=t('protocols.protocols_io_import.comp_append.missing_step') %>
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<strong data-val="name"><%= title %></strong>
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</span>
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</div>
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<br>
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||||
<div class="tab-content">
|
||||
<div class="tab-pane active" role="tabpanel">
|
||||
<div data-val="description" class="ql-editor">
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<% step_info_string = '' %>
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<% step['components'].each do |key,value| %>
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<%#here i made an if to distinguish the first step from the
|
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others, because the first step #sometimes has index values as keys instead of
|
||||
hashes, you might see this elsewhere %>
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<% key = value if value.class == Hash %>
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<% if whitelist_simple.include?(key['component_type_id']) &&
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key['data'].present? %>
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<br>
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<% case key['component_type_id']
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when '1' %>
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<% step_info_string += (key['data']) %>
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<br><strong><%= t('protocols.protocols_io_import.preview.strng_s_desc') %></strong>
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<%=sanitize_input(string_html_table_remove(key['data']).html_safe)%><br>
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<% when '17' %>
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<% step_info_string += (key['data']) %>
|
||||
<br><strong><%= t('protocols.protocols_io_import.preview.s_exp_res') %></strong>
|
||||
<%=sanitize_input(string_html_table_remove(key['data']).html_safe)%>
|
||||
<br>
|
||||
<% end %>
|
||||
<% elsif key && whitelist_complex.include?(key['component_type_id']) %>
|
||||
<% case key['component_type_id']
|
||||
when '8'%>
|
||||
<% step_info_string += key['source_data']['name'] %>
|
||||
<br>
|
||||
<strong><%= key['name']+': ' %></strong>
|
||||
<%= sanitize_input(string_html_table_remove(key['source_data']['name']).html_safe) %>
|
||||
<br><%= t('protocols.protocols_io_import.preview.dev') %>
|
||||
<%= sanitize_input(key['source_data']['developer'].html_safe) %>
|
||||
<br><%= t('protocols.protocols_io_import.preview.vers') %>
|
||||
<%= sanitize_input(key['source_data']['version'].html_safe) %>
|
||||
<br><%= t('protocols.protocols_io_import.preview.s_link') %>
|
||||
<%= sanitize_input(key['source_data']['link'].html_safe) %>
|
||||
<br><%= t('protocols.protocols_io_import.preview.repo') %>
|
||||
<%= sanitize_input(key['source_data']['repository'].html_safe) %>
|
||||
<br><%= t('protocols.protocols_io_import.preview.os') %>
|
||||
<%= sanitize_input(key['source_data']['os_name'].html_safe)+
|
||||
' , '+sanitize_input(key['source_data']['os_version'].html_safe) %>
|
||||
<% when '9'%>
|
||||
<% step_info_string += key['source_data']['name'] %>
|
||||
<br>
|
||||
<strong><%= key['name']+': ' %></strong>
|
||||
<%= sanitize_input(string_html_table_remove(key['source_data']['name']).html_safe) %>
|
||||
<br><%= t('protocols.protocols_io_import.preview.s_link') %>
|
||||
<%= sanitize_input(key['source_data']['link'].html_safe) %>
|
||||
<% when '15'%>
|
||||
<% step_info_string += key['source_data']['description'] %>
|
||||
<br>
|
||||
<strong><%= key['name']+': ' %></strong>
|
||||
<%= sanitize_input(key['source_data']['name'].html_safe) %>
|
||||
<br><%= t('protocols.protocols_io_import.preview.s_desc') %>
|
||||
<%= sanitize_input(string_html_table_remove(key['source_data']['description']).html_safe) %>
|
||||
<br><%= t('protocols.protocols_io_import.preview.os') %>
|
||||
<%= sanitize_input(key['source_data']['os_name'].html_safe)+
|
||||
' , '+sanitize_input(key['source_data']['os_version'].html_safe) %>
|
||||
<% when '18'%>
|
||||
<br><strong><%= t('protocols.protocols_io_import.preview.sub_prot') %></strong>
|
||||
<%= sanitize_input(key['source_data']['protocol_name'].html_safe) %>
|
||||
<br><%= t('protocols.protocols_io_import.preview.auth') %>
|
||||
<%= sanitize_input(key['source_data']['full_name'].html_safe) %>
|
||||
<br>
|
||||
<% if key['source_data']['link'].present? %>
|
||||
<%= t('protocols.protocols_io_import.preview.s_nobr_link') %>
|
||||
<%= sanitize_input(key['source_data']['link'].html_safe) %>
|
||||
<% end %>
|
||||
<% when '19'%>
|
||||
<% step_info_string += key['source_data']['body'] %>
|
||||
<br>
|
||||
<strong><%= key['name']+': ' %></strong>
|
||||
<%= sanitize_input(string_html_table_remove(key['source_data']['body']).html_safe) %>
|
||||
<br><%= t('protocols.protocols_io_import.preview.s_link') %>
|
||||
<%= sanitize_input(key['source_data']['link'].html_safe) %>
|
||||
<% when '20'%>
|
||||
<% else %>
|
||||
<% end #case if%>
|
||||
<% end #inner if%>
|
||||
<% end #step component loop %>
|
||||
<% tables, garbage = protocolsio_string_to_table_element(step_info_string) %>
|
||||
<% if tables.present? %>
|
||||
<br><hr><br>
|
||||
<% end %>
|
||||
<% table_count = 0 %>
|
||||
<% tables.each do |index, table| %>
|
||||
<% table_hash = JSON.parse((Base64.decode64(table['contents']))) %>
|
||||
<% pio_table_id = "pio_table_step_"+counter.to_s+"_info_"+table_count.to_s %>
|
||||
<% step_table_elements_array.push([pio_table_id,table_hash['data']]) %>
|
||||
<div id="<%=pio_table_id%>" ></div>
|
||||
<% table_count += 1 %>
|
||||
<% end %>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<% end #step loop%>
|
||||
<br>
|
||||
<script type="text/javascript">
|
||||
$('#modal-import-json-protocol-preview').on('shown.bs.modal', function (e) {
|
||||
var javascript_table_elements_s = <%=raw sanitize_input(step_table_elements_array.to_json) %>
|
||||
|
||||
for(var j=0;j<javascript_table_elements_s.length;j++)
|
||||
{
|
||||
|
||||
var target = document.getElementById(javascript_table_elements_s[j][0]);
|
||||
var hot = new Handsontable(target, {
|
||||
data: javascript_table_elements_s[j][1],
|
||||
startRows: <%= Constants::HANDSONTABLE_INIT_ROWS_CNT %>,
|
||||
startCols: <%= Constants::HANDSONTABLE_INIT_COLS_CNT %>,
|
||||
rowHeaders: true,
|
||||
colHeaders: true,
|
||||
fillHandle: false,
|
||||
formulas: true,
|
||||
readOnly: true
|
||||
});
|
||||
}
|
||||
})
|
||||
|
||||
</script>
|
||||
|
|
@ -1,8 +1,8 @@
|
|||
|
||||
<% provide(:head_title, t("protocols.index.head_title")) %>
|
||||
|
||||
<% if current_team %>
|
||||
<%= render partial: "protocols/breadcrumbs.html.erb", locals: { teams: @teams, current_team: @current_team, type: @type } %>
|
||||
|
||||
<ul class="nav nav-tabs nav-settings">
|
||||
<li role="presentation" class="<%= "active" if @type == :public %>">
|
||||
<%= link_to t("protocols.index.navigation.public"), protocols_path(team: @current_team, type: :public) %>
|
||||
|
|
@ -48,16 +48,30 @@
|
|||
</a>
|
||||
<% end %>
|
||||
</div>
|
||||
|
||||
<div id="import-export-protocols" class="btn-group" role="group">
|
||||
<a class="btn btn-default btn-open-file" <%= can_import_protocols(@current_team) ? 'data-action="import"' : 'disabled="disabled"' %>>
|
||||
<span class="glyphicon glyphicon-import"></span>
|
||||
<span class="hidden-xs"> <%= t("protocols.index.import") %></span>
|
||||
<input type="file" value="" accept=".eln" data-role="import-file-input"
|
||||
data-team-id="<%= @current_team.id %>"
|
||||
data-type="<%= @type %>" data-import-url="<%= import_protocols_path %>"
|
||||
<%= 'disabled="disabled"' unless can_import_protocols(@current_team) %>>
|
||||
</a>
|
||||
<a class="btn btn-default btn-open-file" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false" href="#">
|
||||
<span class="glyphicon glyphicon-import"></span><span class="hidden-xs"> <%= "Import protocol" %></span></a>
|
||||
|
||||
<ul class="dropdown-menu">
|
||||
<li>
|
||||
<a class="btn-link-alt btn-default-link btn-open-file"
|
||||
<%= can_import_protocols(@current_team) ? 'data-action="import"' : 'disabled="disabled"' %>>
|
||||
<span class="glyphicon glyphicon-file"></span>
|
||||
<span class="hidden-xs"><%= t("protocols.index.import_alt") %></span>
|
||||
<input type="file" value="" accept=".eln" data-role="import-file-input"
|
||||
data-team-id="<%= @current_team.id %>"
|
||||
data-type="<%= @type %>" data-import-url="<%= import_protocols_path %>"
|
||||
<%= 'disabled="disabled"' unless can_import_protocols(@current_team) %>>
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<%= link_to "#modal-import-json-protocol", "data-toggle" => "modal" do %>
|
||||
<span class="glyphicon glyphicon-file"></span>
|
||||
<span class="hidden-xs"><%= t("protocols.index.import_json") %></span>
|
||||
<% end %>
|
||||
</li>
|
||||
|
||||
</ul>
|
||||
<a class="btn btn-default" data-action="export" data-export-url="<%= export_protocols_path() %>">
|
||||
<span class="glyphicon glyphicon-export"></span>
|
||||
<span class="hidden-xs"> <%= t("protocols.index.export") %></span>
|
||||
|
|
@ -121,6 +135,8 @@
|
|||
</p>
|
||||
</div>
|
||||
<% end %>
|
||||
<div id="protocolsio-preview-modal-target"></div>
|
||||
<%= render partial: "protocols/import_export/import_json_protocol_modal.html.erb" %>
|
||||
|
||||
<%= render partial: "protocols/index/create_new_modal.html.erb" %>
|
||||
<%= render partial: "protocols/index/make_private_results_modal.html.erb" %>
|
||||
|
|
|
|||
19
app/views/protocols/protocolsio_import_create.js.erb
Normal file
19
app/views/protocols/protocolsio_import_create.js.erb
Normal file
|
|
@ -0,0 +1,19 @@
|
|||
|
||||
<% if @protocolsio_too_big %>
|
||||
$('#modal-import-json-protocol').modal('hide');
|
||||
HelperModule.flashAlertMsg(' <%= t('my_modules.protocols.load_from_file_size_error',
|
||||
size: Constants::FILE_MAX_SIZE_MB ) %>','danger');
|
||||
<% else %>
|
||||
$('#modal-import-json-protocol').modal('hide');
|
||||
<% if remotipart_submitted? %> <%# a workaround to a bug with remotipart, that caused alot of headache, courtesy of github.com/dhampik %>
|
||||
$('#protocolsio-preview-modal-target').html(
|
||||
"<%= j "#{render(:partial => 'protocols/import_export/import_json_protocol_preview_modal')}" %>"
|
||||
);
|
||||
<% else %>
|
||||
$('#protocolsio-preview-modal-target').html(
|
||||
"<%= j render(:partial => 'protocols/import_export/import_json_protocol_preview_modal') %>"
|
||||
);
|
||||
<% end %>
|
||||
$('#modal-import-json-protocol-preview').modal('show');
|
||||
|
||||
<% end %>
|
||||
10
app/views/protocols/protocolsio_import_save.js.erb
Normal file
10
app/views/protocols/protocolsio_import_save.js.erb
Normal file
|
|
@ -0,0 +1,10 @@
|
|||
<% if @protocolsio_general_error %>
|
||||
$('#modal-import-json-protocol-preview').modal('hide');
|
||||
alert(' <%= t('my_modules.protocols.load_from_file_protocol_general_error',
|
||||
max: Constants::NAME_MAX_LENGTH, min: Constants::NAME_MIN_LENGTH) %>');
|
||||
<% else %>
|
||||
$('#modal-import-json-protocol-preview').modal('hide');
|
||||
$('#protocols_io_form').trigger("reset");
|
||||
protocolsDatatable.ajax.reload();
|
||||
HelperModule.flashAlertMsg(' <%= t('protocols.index.import_results.message_ok_pio')%>', 'success');
|
||||
<% end %>
|
||||
|
|
@ -603,6 +603,7 @@ en:
|
|||
load_from_file_error: "Failed to load the protocol from file."
|
||||
load_from_file_error_locked: "Failed to load the protocol from file. One or more files are currently being edited."
|
||||
load_from_file_size_error: "Failed to load the protocol from file. Limit is %{size}Mb."
|
||||
load_from_file_protocol_general_error: "Failed to load the protocol from file. It is likely that certain fields (protocol and individual step titles and names) contain too many or too few characters.(max is %{max} and min is %{min})"
|
||||
results:
|
||||
head_title: "%{project} | %{module} | Results"
|
||||
add_label: "Add new result:"
|
||||
|
|
@ -1380,11 +1381,60 @@ en:
|
|||
breadcrumbs:
|
||||
manager: "Protocol management"
|
||||
edit: "Edit protocol"
|
||||
protocols_io_import:
|
||||
import_description_notice: "The protocols description is listed below under \"Protocol info\"."
|
||||
preview:
|
||||
prot_desc: "Protocol Description: "
|
||||
b_s_p: "Before starting protocol information:"
|
||||
warn: "Protocol warning:"
|
||||
guideln: "Guidelines:"
|
||||
p_link: "Link:"
|
||||
s_nobr_link: "Link:"
|
||||
s_link: "Link:"
|
||||
s_desc: "Description:"
|
||||
strng_s_desc: "Description:"
|
||||
s_exp_res: "Expected result:"
|
||||
dev: "Developer:"
|
||||
vers: "Version:"
|
||||
repo: "Repository:"
|
||||
os: "OS name , OS version:"
|
||||
sub_prot: "This protocol also contains an attached sub-protocol:"
|
||||
auth: "Author:"
|
||||
manu_cit: "Manuscript citation:"
|
||||
pbl_date: "Publish date:"
|
||||
vnd_name: "Vendor name:"
|
||||
vnd_link: "Vendor link:"
|
||||
key_wrd: "Keywords:"
|
||||
tags: "Tags:"
|
||||
comp_append:
|
||||
table_moved: "<br><strong><i>There was a table here, it was moved to the end of this step. </i></strong>"
|
||||
missing_step: "Step"
|
||||
missing_desc: "Description missing"
|
||||
general_link: "<br>Link: "
|
||||
expected_result: "<br><strong>Expected result: </strong>"
|
||||
soft_packg:
|
||||
title: "<br><strong>Software package: </strong>"
|
||||
dev: "<br>Developer: "
|
||||
vers: "<br>Version: "
|
||||
repo: "<br>Repository: "
|
||||
os: "<br>OS name , OS version: "
|
||||
dataset:
|
||||
title: "<br><strong>Dataset: </strong>"
|
||||
command:
|
||||
title: "<br><strong>Command: </strong>"
|
||||
desc: "<br>Description: "
|
||||
os: "<br>OS name , OS version: "
|
||||
sub_protocol:
|
||||
title: "<br><strong>This step also contains an attached sub-protocol: </strong>"
|
||||
author: "<br>Author: "
|
||||
safety_infor:
|
||||
title: "<br><strong>Safety information: </strong>"
|
||||
import_export:
|
||||
load_file_error: "Failed to load the protocol file."
|
||||
import_modal:
|
||||
title_import: "Import protocol/s"
|
||||
title_import_into_protocol: "Load protocol from file"
|
||||
title_import_into_protocol_protocols_io: "Load protocol from protocols.io file"
|
||||
import_into_protocol_message: "This will overwrite the current protocol!"
|
||||
import_into_protocol_confirm: "Are you sure you wish to load protocol from file? This action will overwrite the current protocol."
|
||||
import_to_linked_task_file: "Are you sure you wish to load protocol from file? This action will overwrite the current protocol in the task and unlink it from repository. The current protocol will remain unchanged in repository."
|
||||
|
|
@ -1440,6 +1490,11 @@ en:
|
|||
edit: "Edit"
|
||||
clone_btn: "Copy"
|
||||
import: "Import"
|
||||
import_alt: "from SciNote protocol file(.eln)"
|
||||
import_json: "from protocols.io file(.txt)"
|
||||
modal_import_json_upload: "Upload file"
|
||||
modal_import_json_title: "Import protocols.io file"
|
||||
modal_import_json_notice: "Upload your protocols.io .txt json protocol file"
|
||||
export: "Export"
|
||||
make_private: "Make private"
|
||||
publish: "Publish"
|
||||
|
|
@ -1505,6 +1560,7 @@ en:
|
|||
title: "Import results"
|
||||
message_failed: "Failed to import %{nr} protocol/s."
|
||||
message_ok: "Successfully imported %{nr} protocol/s."
|
||||
message_ok_pio: "Successfully imported protocol from protocols.io file."
|
||||
row_success: "Imported"
|
||||
row_renamed: "Imported & renamed"
|
||||
row_failed: "Failed"
|
||||
|
|
|
|||
|
|
@ -401,6 +401,7 @@ Rails.application.routes.draw do
|
|||
to: 'protocols#load_from_repository_modal'
|
||||
post 'load_from_repository', to: 'protocols#load_from_repository'
|
||||
post 'load_from_file', to: 'protocols#load_from_file'
|
||||
|
||||
get 'copy_to_repository_modal', to: 'protocols#copy_to_repository_modal'
|
||||
post 'copy_to_repository', to: 'protocols#copy_to_repository'
|
||||
get 'protocol_status_bar', to: 'protocols#protocol_status_bar'
|
||||
|
|
@ -418,6 +419,8 @@ Rails.application.routes.draw do
|
|||
post 'archive', to: 'protocols#archive'
|
||||
post 'restore', to: 'protocols#restore'
|
||||
post 'import', to: 'protocols#import'
|
||||
post 'protocolsio_import_create', to: 'protocols#protocolsio_import_create'
|
||||
post 'protocolsio_import_save', to: 'protocols#protocolsio_import_save'
|
||||
get 'export', to: 'protocols#export'
|
||||
end
|
||||
end
|
||||
|
|
|
|||
|
|
@ -11,7 +11,7 @@
|
|||
#
|
||||
# It's strongly recommended that you check this file into your version control system.
|
||||
|
||||
ActiveRecord::Schema.define(version: 20170515141252) do
|
||||
ActiveRecord::Schema.define(version: 20170619125051) do
|
||||
|
||||
# These are extensions that must be enabled in order to support this database
|
||||
enable_extension "plpgsql"
|
||||
|
|
|
|||
Loading…
Reference in a new issue