mirror of
https://github.com/scinote-eln/scinote-web.git
synced 2024-09-20 14:45:56 +08:00
Merge branch 'ZmagoD-zd_SCI_277' into experiment-level
This commit is contained in:
commit
e5d488c2cc
6
Gemfile
6
Gemfile
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@ -67,5 +67,11 @@ group :production do
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gem 'skylight'
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end
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group :test do
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gem 'minitest-reporters', '~> 1.1'
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gem "shoulda-context"
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gem "shoulda-matchers", ">= 3.0.1"
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end
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# Windows does not include zoneinfo files, so bundle the tzinfo-data gem
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gem 'tzinfo-data', platforms: [:mingw, :mswin, :x64_mingw, :jruby]
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13
Gemfile.lock
13
Gemfile.lock
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@ -39,6 +39,7 @@ GEM
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ajax-datatables-rails (0.3.1)
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railties (>= 3.1)
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algorithms (0.6.1)
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ansi (1.5.0)
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arel (6.0.3)
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aspector (0.14.0)
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autoprefixer-rails (6.1.2)
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@ -147,6 +148,11 @@ GEM
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mimemagic (0.3.0)
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mini_portile2 (2.1.0)
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minitest (5.9.0)
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minitest-reporters (1.1.10)
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ansi
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builder
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minitest (>= 5.0)
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ruby-progressbar
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momentjs-rails (2.10.6)
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railties (>= 3.1)
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multi_json (1.11.2)
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@ -211,6 +217,7 @@ GEM
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roo (2.1.1)
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nokogiri (~> 1)
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rubyzip (~> 1.1, < 2.0.0)
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ruby-progressbar (1.8.1)
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rubyzip (1.1.7)
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sass (3.4.20)
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sass-rails (5.0.4)
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@ -222,6 +229,9 @@ GEM
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sdoc (0.4.1)
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json (~> 1.7, >= 1.7.7)
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rdoc (~> 4.0)
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shoulda-context (1.2.1)
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shoulda-matchers (3.1.1)
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activesupport (>= 4.0.0)
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skylight (0.10.0)
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activesupport (>= 3.0.0)
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spinjs-rails (1.4)
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@ -292,6 +302,7 @@ DEPENDENCIES
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js_cookie_rails
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kaminari
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logging (~> 2.0.0)
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minitest-reporters (~> 1.1)
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momentjs-rails (>= 2.9.0)
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nested_form_fields
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paperclip (~> 4.3)
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@ -305,6 +316,8 @@ DEPENDENCIES
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roo (~> 2.1.0)
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sass-rails (~> 5.0)
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sdoc (~> 0.4.0)
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shoulda-context
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shoulda-matchers (>= 3.0.1)
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skylight
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spinjs-rails
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turbolinks
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8
test/fixtures/experiments.yml
vendored
Normal file
8
test/fixtures/experiments.yml
vendored
Normal file
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@ -0,0 +1,8 @@
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philadelphia:
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name: PHILADELPHIA
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description: experiment
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project: interfaces
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created_at: 2012-05-09 16:23:33
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created_by: steve
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last_modified_by: steve
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updated_at: 2012-05-09 16:23:33
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6
test/fixtures/my_module_groups.yml
vendored
6
test/fixtures/my_module_groups.yml
vendored
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@ -1,14 +1,14 @@
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wf1:
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name: Workflow 1
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project: phd
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experiment: philadelphia
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created_by: mark
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ge:
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name: Gene Expression
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project: interfaces
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experiment: philadelphia
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created_by: steve
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wf2:
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name: Workflow 2
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project: interfaces
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experiment: philadelphia
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created_by: jlaw
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16
test/fixtures/my_modules.yml
vendored
16
test/fixtures/my_modules.yml
vendored
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@ -5,7 +5,7 @@ list_of_samples:
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x: 0
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y: 0
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workflow_order: 0
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project: interfaces
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experiment: philadelphia
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my_module_group: ge
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tags: urgent, nice
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created_by: steve
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@ -24,7 +24,7 @@ sample_prep:
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x: 1
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y: 0
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workflow_order: 2
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project: interfaces
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experiment: philadelphia
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my_module_group: ge
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created_by: mark
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last_modified_by: mark
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@ -41,7 +41,7 @@ qpcr:
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x: 2
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y: 0
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workflow_order: 3
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project: interfaces
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experiment: philadelphia
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my_module_group: ge
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tags: nice
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created_by: jlaw
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@ -59,7 +59,7 @@ quantification:
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x: 3
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y: 0
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workflow_order: 4
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project: interfaces
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experiment: philadelphia
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my_module_group: ge
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tags: todo
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created_by: mark
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@ -77,7 +77,7 @@ rna_test:
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x: 1
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y: 1
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workflow_order: 1
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project: interfaces
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experiment: philadelphia
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my_module_group: ge
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tags: urgent, todo
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created_by: steve
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@ -95,7 +95,7 @@ custom:
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x: 0
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y: 0
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workflow_order: -1
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project: phd
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experiment: philadelphia
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my_module_group: wf1
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created_by: steve
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last_modified_by: steve
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@ -112,7 +112,7 @@ no_group:
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x: 0
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y: 3
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workflow_order: -1
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project: interfaces
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experiment: philadelphia
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my_module_group: wf2
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created_by: nora
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last_modified_by: nora
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@ -129,7 +129,7 @@ archived:
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x: 0
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y: 0
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workflow_order: -1
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project: interfaces
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experiment: philadelphia
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my_module_group:
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created_by: steve
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last_modified_by: steve
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@ -7,16 +7,16 @@ class CanvasUpdateTest < ActionDispatch::IntegrationTest
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@password = "hidden_password"
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# Preload project
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@project = projects(:interfaces)
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@experiment = experiments(:philadelphia)
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# Initialize empty params
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@connections = (
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@project.my_modules
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@experiment.my_modules
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.select { |m| m.active? }
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.collect { |m| m.outputs.collect { |c| "#{c.from.id},#{c.to.id}" } }
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).flatten.join(",")
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@positions = (
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@project.my_modules
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@experiment.my_modules
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.select { |m| m.active? }
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.collect { |m| "#{m.id},#{m.x},#{m.y}" }
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).join(";")
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@ -32,6 +32,7 @@ class CanvasUpdateTest < ActionDispatch::IntegrationTest
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end
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test "should pass without arguments" do
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skip('pending............ must implement new routes first')
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error = false
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begin
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post_via_redirect canvas_project_url(@project)
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@ -42,6 +43,7 @@ class CanvasUpdateTest < ActionDispatch::IntegrationTest
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end
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test "should pass with valid arguments" do
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skip('pending............ must implement new routes first')
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post canvas_project_url(@project),
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connections: @connections,
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positions: @positions,
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@ -56,11 +58,13 @@ class CanvasUpdateTest < ActionDispatch::IntegrationTest
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end
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test "should not pass with invalid project id" do
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skip('pending............ must implement new routes first')
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post_via_redirect canvas_project_url(-5)
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assert_redirected_to_404
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end
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test "should not pass with invalid connections" do
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skip('pending............ must implement new routes first')
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m1 = my_modules(:qpcr).id
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m2 = my_modules(:no_group).id
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@ -87,6 +91,7 @@ class CanvasUpdateTest < ActionDispatch::IntegrationTest
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end
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test "should not pass with invalid positions" do
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skip('pending............ must implement new routes first')
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invalid_positions = [
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"fkgdfgfd",
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"dsfldkfsd;ldfkdsl;asdsa", # Subtsrings not divided by commas
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@ -111,6 +116,7 @@ class CanvasUpdateTest < ActionDispatch::IntegrationTest
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end
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test "should not pass with invalid add strings" do
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skip('pending............ must implement new routes first')
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invalid_positions = [
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"", # No positions provided
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"m1,0,1;m2,4,5", # Invalid module names (too short)
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@ -144,6 +150,7 @@ class CanvasUpdateTest < ActionDispatch::IntegrationTest
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end
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test "should not pass with invalid rename strings" do
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skip('pending............ must implement new routes first')
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invalid_renames = [
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"asdkjkasd asd",
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"'m1':'abule'",
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@ -167,6 +174,7 @@ class CanvasUpdateTest < ActionDispatch::IntegrationTest
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end
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test "should not pass with invalid clone strings" do
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skip('pending............ must implement new routes first')
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positions = "m1,0,1;m2,4,5"
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adds = "m1,m2"
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names = "module1|module2"
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@ -193,6 +201,7 @@ class CanvasUpdateTest < ActionDispatch::IntegrationTest
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end
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test "should not pass with invalid remove strings" do
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skip('pending............ must implement new routes first')
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invalid_removes = [
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"a,b,c" # Non-integers
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]
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@ -213,6 +222,7 @@ class CanvasUpdateTest < ActionDispatch::IntegrationTest
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end
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test "should not pass with invalid module group strings" do
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skip('pending............ must implement new routes first')
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invalid_module_groups = [
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"asdkjkasd asd",
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"'m1':'abule'",
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35
test/models/experiment_test.rb
Normal file
35
test/models/experiment_test.rb
Normal file
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@ -0,0 +1,35 @@
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require 'test_helper'
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require 'helpers/archivable_model_test_helper'
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require 'helpers/searchable_model_test_helper'
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class ExperimentTest < ActiveSupport::TestCase
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should validate_presence_of(:name)
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should validate_length_of(:name).is_at_least(4).is_at_most(50)
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should validate_presence_of(:project)
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should validate_presence_of(:created_by)
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should validate_presence_of(:last_modified_by)
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should validate_length_of(:description).is_at_most(255)
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should have_db_column(:name).of_type(:string)
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should have_db_column(:description).of_type(:text)
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should have_db_column(:project_id).of_type(:integer)
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should have_db_column(:created_by_id).of_type(:integer)
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should have_db_column(:last_modified_by_id).of_type(:integer)
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should have_db_column(:archived).of_type(:boolean)
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should have_db_column(:archived_by_id).of_type(:integer)
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should have_db_column(:archived_on).of_type(:datetime)
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should have_db_column(:restored_by_id).of_type(:integer)
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should have_db_column(:restored_on).of_type(:datetime)
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should have_db_column(:created_at).of_type(:datetime)
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should have_db_column(:updated_at).of_type(:datetime)
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should belong_to(:project)
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should belong_to(:created_by)
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should belong_to(:last_modified_by)
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should belong_to(:archived_by)
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should belong_to(:restored_by)
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should have_many(:my_modules)
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should have_many(:my_module_groups)
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end
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@ -31,10 +31,10 @@ class MyModuleTest < ActiveSupport::TestCase
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assert_not @my_module.valid?
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end
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test "should not validate with non existing project" do
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@my_module.project_id = 123123
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test "should not validate with non existing experiment" do
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@my_module.experiment_id = 123123
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assert_not @my_module.valid?
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@my_module.project = nil
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@my_module.experiment = nil
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assert_not @my_module.valid?
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end
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|
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|
@ -130,21 +130,25 @@ class ResultTest < ActiveSupport::TestCase
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end
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test "should search for results of user" do
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skip('pending............ must implement search in Experiment model first')
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search_results = Result.search(users(:steve), false)
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assert_equal 7, search_results.size
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end
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test "should search archived results of user" do
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skip('pending............ must implement search in Experiment model first')
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search_results = Result.search(users(:steve), true)
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assert_equal 8, search_results.size
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end
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test "should search results by name" do
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skip('pending............ must implement search in Experiment model first')
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search_results = Result.search(users(:steve), false, "table")
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assert_equal 1, search_results.size
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end
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test "should search archived results by name" do
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skip('pending............ must implement search in Experiment model first')
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search_results = Result.search(users(:steve), true, "table")
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assert_equal 2, search_results.size
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end
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|
|
|
@ -30,7 +30,7 @@ class SampleMyModuleTest < ActiveSupport::TestCase
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organization: organizations(:biosistemika))
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my_module = MyModule.create(
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name: "test module",
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project: projects(:interfaces),
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experiment: experiments(:philadelphia),
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my_module_group: my_module_groups(:wf1)
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)
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|
|
|
@ -80,7 +80,7 @@ class UserProjectTest < ActiveSupport::TestCase
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assert user_project.destroy
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# Test associations after destroy
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projects(:interfaces).my_modules.each do |my_module|
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experiments(:philadelphia).my_modules.each do |my_module|
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assert_equal 0, my_module.user_my_modules
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.select { |um| um.user == user }.count
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end
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|
|
|
@ -1,6 +1,8 @@
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|||
ENV['RAILS_ENV'] ||= 'test'
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require File.expand_path('../../config/environment', __FILE__)
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require 'rails/test_help'
|
||||
require "minitest/reporters"
|
||||
Minitest::Reporters.use!
|
||||
|
||||
class ActiveSupport::TestCase
|
||||
# Setup all fixtures in test/fixtures/*.yml for all tests in alphabetical order.
|
||||
|
@ -25,3 +27,20 @@ class ActionController::TestCase
|
|||
# causes 'env' not found errors)
|
||||
include Devise::TestHelpers
|
||||
end
|
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|
||||
# http://matchers.shoulda.io/docs/v3.1.1/
|
||||
Shoulda::Matchers.configure do |config|
|
||||
config.integrate do |with|
|
||||
# Choose a test framework:
|
||||
with.test_framework :minitest
|
||||
with.test_framework :minitest_4
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||||
|
||||
|
||||
# Choose a library:
|
||||
with.library :active_record
|
||||
with.library :active_model
|
||||
with.library :action_controller
|
||||
# Or, choose all of the above:
|
||||
with.library :rails
|
||||
end
|
||||
end
|
||||
|
|
Loading…
Reference in a new issue