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refactor steps annotation

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This commit is contained in:
zmagod 2017-04-06 13:03:13 +02:00
parent bb437bd8c5
commit f16607579f
5 changed files with 33 additions and 289 deletions
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1
app/assets/javascripts/samples/sample_datatable.js.erb
View file

@ -524,6 +524,7 @@ function onClickSave() {
// First fetch all the data in input fields
data = {
request_url: $('#samples').data('current-uri'),
sample_id: $(selectedSample).attr("id"),
sample: {},
custom_fields: {}, // These fields are not currently bound to this sample

27
app/controllers/samples_controller.rb
View file

@ -1,5 +1,7 @@
class SamplesController < ApplicationController
include InputSanitizeHelper
include ActionView::Helpers::TextHelper
include ApplicationHelper
before_action :load_vars, only: [:edit, :update, :destroy, :show]
before_action :load_vars_nested, only: [:new, :create]
@ -82,6 +84,8 @@ class SamplesController < ApplicationController
errors[:custom_fields] << {
"#{id}": scf.errors.messages
}
else
sample_annotation_notification(sample, scf)
end
end
end
@ -198,6 +202,7 @@ class SamplesController < ApplicationController
scf = SampleCustomField.where("custom_field_id = ? AND sample_id = ?", id, sample.id).take
if scf
old_text = scv.value
# Well, client was naughty, no XMAS for him this year, update
# existing SCF instead of creating new one
scf.value = val
@ -207,6 +212,8 @@ class SamplesController < ApplicationController
errors[:custom_fields] << {
"#{id}": scf.errors.messages
}
else
sample_annotation_notification(sample, scf, old_text)
end
else
# SCF doesn't exist, create it
@ -220,6 +227,8 @@ class SamplesController < ApplicationController
errors[:custom_fields] << {
"#{id}": scf.errors.messages
}
else
sample_annotation_notification(sample, scf)
end
end
end
@ -235,6 +244,7 @@ class SamplesController < ApplicationController
if val.empty?
scf_to_delete << scf
else
old_text = scf.value
# SCF exists, update away
scf.value = val
@ -242,6 +252,8 @@ class SamplesController < ApplicationController
errors[:sample_custom_fields] << {
"#{id}": scf.errors.messages
}
else
sample_annotation_notification(sample, scf, old_text)
end
end
else
@ -331,4 +343,19 @@ class SamplesController < ApplicationController
:sample_group_id
)
end
def sample_annotation_notification(sample, scf, old_text = nil)
table_url = params.fetch(:request_url) { :request_url_must_be_present }
smart_annotation_notification(
old_text: (old_text if old_text),
new_text: scf.value,
title: t('notifications.sample_annotation_title',
user: current_user.full_name,
column: scf.custom_field.name,
sample: sample.name),
message: t('notifications.sample_annotation_message_html',
sample: link_to(sample.name, table_url),
column: link_to(scf.custom_field.name, table_url))
)
end
end

290
app/controllers/steps_controller.rb
View file

@ -1,6 +1,7 @@
class StepsController < ApplicationController
include ActionView::Helpers::TextHelper
include ApplicationHelper
include StepsActions
before_action :load_vars, only: [:edit, :update, :destroy, :show]
before_action :load_vars_nested, only: [:new, :create]
@ -686,293 +687,4 @@ class StepsController < ApplicationController
]
)
end
# generates notification for smart annotations
def create_annotation_notification(step)
# step description
smart_annotation_notification(
new_text: step.description,
title: t('notifications.step_description_title',
user: current_user.full_name,
step: step.name),
message: t('notifications.step_annotation_message_html',
project: link_to(
step.my_module.experiment.project.name,
project_url(step.my_module.experiment.project)
),
my_module: link_to(
step.my_module.name,
protocols_my_module_url(step.my_module)
),
step: link_to(
step.name,
protocols_my_module_url(step.my_module)
))
)
# checklists
step.checklists.each do |checklist|
smart_annotation_notification(
new_text: checklist.name,
title: t('notifications.checklist_title',
user: current_user.full_name,
step: step.name),
message: t('notifications.step_annotation_message_html',
project: link_to(
step.my_module.experiment.project.name,
project_url(step.my_module.experiment.project)
),
my_module: link_to(
step.my_module.name,
protocols_my_module_url(step.my_module)
),
step: link_to(
step.name,
protocols_my_module_url(step.my_module)
))
)
checklist.checklist_items.each do |checklist_item|
smart_annotation_notification(
new_text: checklist_item.text,
title: t('notifications.checklist_title',
user: current_user.full_name,
step: step.name),
message: t('notifications.step_annotation_message_html',
project: link_to(
step.my_module.experiment.project.name,
project_url(step.my_module.experiment.project)
),
my_module: link_to(
step.my_module.name,
protocols_my_module_url(step.my_module)
),
step: link_to(
step.name,
protocols_my_module_url(step.my_module)
))
)
end
end
end
def fetch_new_checklists_data
checklists = []
new_checklists = step_params[:checklists_attributes]
if new_checklists
new_checklists.each do |e|
list = PreviouseChecklist.new(
e.second[:id].to_i,
e.second[:name]
)
if e.second[:checklist_items_attributes]
e.second[:checklist_items_attributes].each do |el|
list.add_checklist(
PreviouseChecklistItem.new(el.second[:id].to_i, el.second[:text])
)
end
end
checklists << list
end
end
checklists
end
def fetch_old_checklists_data(step)
checklists = []
if step.checklists
step.checklists.each do |e|
list = PreviouseChecklist.new(
e.id,
e.name
)
e.checklist_items.each do |el|
list.add_checklist(
PreviouseChecklistItem.new(el.id, el.text)
)
end
checklists << list
end
end
checklists
end
def update_annotation_notification(step,
old_description,
new_checklists,
old_checklists)
smart_annotation_notification(
old_text: old_description,
new_text: step.description,
title: t('notifications.step_description_title',
user: current_user.full_name,
step: step.name),
message: t('notifications.step_annotation_message_html',
project: link_to(
step.my_module.experiment.project.name,
project_url(step.my_module.experiment.project)
),
my_module: link_to(
step.my_module.name,
protocols_my_module_url(step.my_module)
),
step: link_to(
step.name,
protocols_my_module_url(step.my_module)
))
)
new_checklists.each do |e|
# generates smart annotaion if the checklist is new
add_new_checklist(step, e) if e.id.zero?
smart_annotation_notification(
new_text: e.name,
title: t('notifications.checklist_title',
user: current_user.full_name,
step: step.name),
message: t('notifications.step_annotation_message_html',
project: link_to(
step.my_module.experiment.project.name,
project_url(step.my_module.experiment.project)
),
my_module: link_to(
step.my_module.name,
protocols_my_module_url(step.my_module)
),
step: link_to(
step.name,
protocols_my_module_url(step.my_module)
))
) unless e.id
# else check if checklist is not deleted and generates
# new notifications
next unless old_checklists.map(&:id).include?(e.id)
old_checklist = old_checklists.select { |i| i.id == e.id }.first
smart_annotation_notification(
old_text: (old_checklist.name if old_checklist),
new_text: e.name,
title: t('notifications.checklist_title',
user: current_user.full_name,
step: step.name),
message: t('notifications.step_annotation_message_html',
project: link_to(
step.my_module.experiment.project.name,
project_url(step.my_module.experiment.project)
),
my_module: link_to(
step.my_module.name,
protocols_my_module_url(step.my_module)
),
step: link_to(
step.name,
protocols_my_module_url(step.my_module)
))
)
e.items.each do |ci|
old_list = old_checklists.select { |i| i.id == e.id }.first
old_item = old_list.items.select { |i| i.id == ci.id }.first if old_list
smart_annotation_notification(
old_text: (old_item.text if old_item),
new_text: ci.text,
title: t('notifications.checklist_title',
user: current_user.full_name,
step: step.name),
message: t('notifications.step_annotation_message_html',
project: link_to(
step.my_module.experiment.project.name,
project_url(step.my_module.experiment.project)
),
my_module: link_to(
step.my_module.name,
protocols_my_module_url(step.my_module)
),
step: link_to(
step.name,
protocols_my_module_url(step.my_module)
))
)
end
end
end
def add_new_checklist(step, checklist)
smart_annotation_notification(
new_text: checklist.name,
title: t('notifications.checklist_title',
user: current_user.full_name,
step: step.name),
message: t('notifications.step_annotation_message_html',
project: link_to(
step.my_module.experiment.project.name,
project_url(step.my_module.experiment.project)
),
my_module: link_to(
step.my_module.name,
protocols_my_module_url(step.my_module)
),
step: link_to(
step.name,
protocols_my_module_url(step.my_module)
))
)
checklist.items.each do |ci|
smart_annotation_notification(
new_text: ci.text,
title: t('notifications.checklist_title',
user: current_user.full_name,
step: step.name),
message: t('notifications.step_annotation_message_html',
project: link_to(
step.my_module.experiment.project.name,
project_url(step.my_module.experiment.project)
),
my_module: link_to(
step.my_module.name,
protocols_my_module_url(step.my_module)
),
step: link_to(
step.name,
protocols_my_module_url(step.my_module)
))
)
end
end
PreviouseChecklistItem = Struct.new(:id, :text)
PreviouseChecklist = Struct.new(:id, :name, :items) do
def initialize(id, name, items = [])
super(id, name, items)
end
def add_checklist(item)
items << item
end
end
# def update_annotation_notification(step, updated_step)
# # step description
# smart_annotation_notification(
# old_text:
# new_text: updated_step.description,
# title: t('notifications.step_description_title'),
# message: t('notifications.step_description_message')
# )
# # checklists
# updated_step.checklists.each do |checklist|
# smart_annotation_notification(
#
# new_text: checklist.name,
# title: t('notifications.checklist_title'),
# message: t('notifications.checklist_message')
# )
# checklist.checklist_items.each do |checklist_item|
# smart_annotation_notification(
# new_text: checklist_item.text,
# title: t('notifications.checklist_item_title'),
# message: t('notifications.checklist_item_message')
# )
# end
# end
# end
end

1
app/views/shared/_samples.html.erb
View file

@ -125,6 +125,7 @@
<div class="samples-table">
<table id="samples" class="table"
data-current-uri="<%= request.original_url %>"
data-team-id="<%= @project.team.id %>"
data-user-id="<%= @current_user.id %>"
data-source="<%= @samples_index_link %>"

3
config/locales/en.yml
View file

@ -1523,6 +1523,9 @@ en:
result_annotation_title: "%{user} mentioned you in result %{result}."
result_comment_annotation_title: "%{user} mentioned you in result %{result} comment."
result_annotation_message_html: "Project: %{project} | Task: %{my_module}"
sample_annotation_title: "%{user} mentioned you in Column: %{column} of Sample %{sample}"
sample_annotation_message_html: "Sample: %{sample} | Column: %{column}"
protocol_step_annotation_message_html: "Protocol: %{protocol}"
email_title: "You've received a sciNote notification!"
assign_user_to_team: "<i>%{assigned_user}</i> was added as %{role} to team <strong>%{team}</strong> by <i>%{assigned_by_user}</i>."
unassign_user_from_team: "<i>%{unassigned_user}</i> was removed from team <strong>%{team}</strong> by <i>%{unassigned_by_user}</i>."