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442 commits

Author SHA1 Message Date
Martin Artnik d67d53b926 Code style fixes 2021-06-22 13:27:03 +02:00
Martin Artnik eaa713f5b8 Fix indices [SCI-5829] 2021-06-22 12:51:25 +02:00
Martin Artnik a9d6c4bb94 Code style fixes [SCI-5828] 2021-06-18 14:19:35 +02:00
Martin Artnik 29ff910eba Added searching experiments by EX[ID] [SCI-5829] 2021-06-18 14:12:59 +02:00
Martin Artnik c6648111f3 Code style fixes [SCI-5800] 2021-06-17 22:00:13 +02:00
Martin Artnik 47071e23a1 Added specs for webhooks 2021-06-17 14:54:30 +02:00
Martin Artnik 4ee50f87d5 Implement webhook service and scheduling jobs [SCI-5801, SCI-5802] 2021-06-17 09:19:04 +02:00
zmagoD 8997ba10d1 mark user assigmetns when they are created manually or automatically 2021-06-12 09:36:41 +02:00
aignatov-bio afe2a19c88
Add webhooks management [SCI-5767] (#3376) 
* Add webhooks managment [SCI-5767]

* Markup fixes [SCI-5676]
 2021-06-09 12:53:11 +02:00
aignatov-bio 16f83a3e60 Remove docx preview processing flag [SCI-5601] 2021-06-09 10:58:27 +02:00
aignatov-bio bf781c2ca4 Small fixes [SCI-5765] 2021-06-01 10:58:05 +02:00
aignatov-bio 3c7592657c Add activity filters [SCI-5765] 2021-05-31 13:39:10 +02:00
aignatov-bio 2be59bf8b2 Add pdf preview for docx reports [SCI-5601] 2021-05-25 15:14:50 +02:00
Oleksii Kriuchykhin 29c83ffbb1 Merge branch 'develop' into features/new-reports 2021-05-21 11:04:17 +02:00
Oleksii Kriuchykhin a175e83a16 Add generation error states to reports [SCI-5702] 2021-05-11 14:52:02 +02:00
zmagoD c0eb38b564 Merge branch 'develop' of https://github.com/biosistemika/scinote-web into features/new_permissions 2021-05-08 10:33:43 +02:00
Oleksii Kriuchykhin b67f2a21f5 Add default settings to existing reports [SCI-5619][SCI-5672] 2021-05-06 17:33:58 +02:00
miha 4c29de62be [SCI-5635] Use update_column in the migration in order to avoid callbacks 2021-04-13 10:28:41 +02:00
miha b6a4a5326f replace .find with .find_each 2021-04-12 13:57:03 +02:00
miha 56ebc3dc07 [SCI-5635] add a migration to fix broken steps, fix the api so it sets last_modified_by_id, minor step model refactor 
migration fix

remove the conditoin for set_last_modified_by callback

set the last_modified_by_id in before_save callback (in case it is not set yet)

remove trailing spaces

Set last modified in protocl import service
 2021-04-12 09:59:00 +02:00
Oleksii Kriuchykhin 67302da968 Add settings to reports [SCI-5612] 2021-04-08 17:40:16 +02:00
Oleksii Kriuchykhin a9ac8452f2 Add dynamic form elements in report wizard step 1 [SCI-5591] 2021-04-06 13:56:24 +02:00
Oleksii Kriuchykhin d006b813b9 Add pdf and docx attachments to reports [SCI-5558] 2021-03-15 13:30:03 +01:00
aignatov-bio df4297f6f7 Merge branch 'develop' into features/local_file_previews 2021-03-08 11:30:47 +01:00
Oleksii Kriuchykhin d8cffe53c7 Add migration for new user assignments to projects [SCI-5478] 2021-03-01 14:28:21 +01:00
Oleksii Kriuchykhin 49194d1a45 Prepare initial user roles in the database [SCI-5435] 2021-02-22 11:58:40 +01:00
Oleksii Kriuchykhin afbd763125 Update Doorkeeper configuration [SCI-5497] 2021-02-17 12:54:28 +01:00
Oleksii Kriuchykhin 1e3e701788 Add models for new permissions objects [SCI-5434] 2021-02-04 14:08:20 +01:00
Oleksii Kriuchykhin 75da67b937 Update Rails to 6.1.1, ruby to 2.7.2 [SCI-5459] 2021-01-28 14:43:45 +01:00
Oleksii Kriuchykhin 67b3f853d7 Merge branch 'develop' into features/folders 2020-12-18 14:51:21 +01:00
Oleksii Kriuchykhin f150a11c4f Archiving: add 'archived' flag on folder [SCI-5268] 2020-12-17 12:47:23 +01:00
Oleksii Kriuchykhin 2a666a3718 Implement additional preview type PDF of the whole document [SCI-5297] 2020-12-16 12:51:10 +01:00
Oleksii Kriuchykhin 62374bee0a Implement the 'seen comments' functionality (red dot) for the comments [SCI-5253] 2020-12-07 11:04:33 +01:00
Mojca Lorber 8aed48d1ae Merge branch 'develop' into features/office-file-previews 2020-11-02 13:45:06 +01:00
aignatov-bio 12991e8fd3 Commit add asset preview mode switcher to step 2020-10-29 16:42:05 +01:00
Oleksii Kriuchykhin e87407bbd3 Create database structure for project folders [SCI-5126] 2020-10-29 15:44:21 +01:00
Urban Rotnik 1089e7e4fd Merge branch 'jg_sci_2228' of github.com:jbargu/scinote-web into jg_sci_2228 2020-10-22 14:27:32 +02:00
Urban Rotnik aa1520bfb8 Merge branch 'develop' into jg_sci_2228 2020-10-22 14:21:39 +02:00
aignatov-bio 0a4b89cf39 Merge branch 'develop' into features/office-file-previews 2020-10-15 15:19:56 +02:00
Oleksii Kriuchykhin a7c6ab9d89 Move some consequence executon into background process [SCI-4978] 2020-09-11 16:18:39 +02:00
Urban Rotnik 9bddac5191 Check if indexes exists in DB 2020-09-07 10:55:05 +02:00
Oleksii Kriuchykhin a508b07275 Add view mode field to the Asset model [SCI-4958] 2020-09-02 15:02:56 +02:00
Urban Rotnik a259800590 Merge branch 'develop' into jg_sci_2228 2020-08-31 16:29:23 +02:00
aignatov-bio 6229ba6041 Add morkflow generator 2020-08-27 12:13:13 +02:00
aignatov-bio c07ebe90fa Add migration for task states 2020-08-27 11:34:59 +02:00
Urban Rotnik a5fb873d19 Add default workflow 2020-08-27 10:54:39 +02:00
Urban Rotnik 7c14da70d9
Merge branch 'features/task-flows' into develop_to_task_flows 2020-08-04 14:50:46 +02:00
aignatov-bio 15b5f9bb68 Add ordering for result page 2020-07-28 15:39:29 +02:00
aignatov-bio ddfe8231d8 Merge branch 'features/2fa' into develop 2020-07-22 11:56:36 +02:00
Oleksii Kriuchykhin 7fd004baa8 Prepare database structure and relations for statuses phase one [SCI-4825] 2020-07-17 18:04:09 +02:00
Mojca Lorber 532f6dfc03 Fix uniqueness 2020-07-17 16:37:32 +02:00
Mojca Lorber d8794972d5 Change migration 2020-07-17 16:35:03 +02:00
Mojca Lorber b087a8cbce Add migrations for devise lockable 2020-07-14 14:53:20 +02:00
aignatov-bio fef6e5f1db Add recovery strategy for 2fa 2020-07-09 17:01:00 +02:00
aignatov-bio 13f7653667 Merge branch 'develop' into features/2fa 2020-07-07 13:05:45 +02:00
aignatov-bio c479c6100c Clear table state on error 2020-07-01 12:49:24 +02:00
Urban Rotnik de8aca9dbd Rename column 2020-06-29 10:42:19 +02:00
aignatov-bio 6c7edbb9be Fix markup 2020-06-26 14:32:55 +02:00
aignatov-bio 2da0a6c6bf Improve repository state migration 2020-06-26 14:31:10 +02:00
Urban Rotnik 88f54b16d7 Add 2fa fields to user 2020-06-24 17:58:58 +02:00
aignatov-bio d940d1e43d Add new line 2020-06-24 10:00:34 +02:00
aignatov-bio 0dff84cae0 Update migration 2020-06-24 09:51:24 +02:00
aignatov-bio 0fe4ee0eae Add migration for repository states 2020-06-22 16:47:42 +02:00
Urban Rotnik ebbce8d09e Add restore columns to migrations 2020-06-09 18:43:22 +02:00
mlorb 75f2a49cc4
Merge branch 'features/inventory-archiving' into ml-sci-4689 2020-06-08 16:30:24 +02:00
Mojca Lorber 42d6d727b9 Add archive to repository rows 2020-06-04 23:29:37 +02:00
aignatov-bio 4a6d7d0e12 Add archived inventories 2020-06-04 19:07:10 +02:00
Mojca Lorber d8523e03c8 Add db changes 2020-06-04 16:08:29 +02:00
Mojca Lorber d3806e53a5 Add archive to repository 2020-06-04 15:44:47 +02:00
Oleksii Kriuchykhin c74fa3c244 Make snapshots selectable [SCI-4596] 2020-05-13 17:58:05 +02:00
Oleksii Kriuchykhin 307a5d7e1b Improve code style in migration [SCI-4552] 2020-04-29 10:42:00 +02:00
Oleksii Kriuchykhin e6ad5047e0 Implement background processing of repository snapshots [SCI-4552] 2020-04-28 12:09:36 +02:00
Oleksii Kriuchykhin 3a67c99982 Switch to STI for repositories, fix cell values snapshotting [SCI-4516] 2020-04-09 12:33:04 +02:00
Oleksii Kriuchykhin a9c3102835 Add repository snapshots with service, refactor item assigning [SCI-4516] 2020-04-07 18:26:39 +02:00
Oleksii Kriuchykhin 3c53be1f9a Add start date to the task [SCI-4504] 2020-03-31 14:17:14 +02:00
Oleksii Kriuchykhin c2409bbfef Update structure.sql [SCI-4330] 2020-02-07 15:30:15 +01:00
Oleksii Kriuchykhin 6f8f89fbf0 Improve speed of global activities fetching query [SCI-4330] 2020-02-07 13:53:25 +01:00
Urban Rotnik 1531a2f47e Structure.sql fix 2020-01-22 12:25:07 +01:00
Oleksii Kriuchykhin fc4cd6d14c Fix includes in transactions [SCI-4251] 2020-01-16 17:14:20 +01:00
Oleksii Kriuchykhin 1c33885754 Fix status item migration [SCI-4251] 2020-01-16 16:05:49 +01:00
Oleksii Kriuchykhin 8c2b1e5037 Fix global search for repositories and checklists update [SCI-4251] 2020-01-16 15:30:19 +01:00
Alex Kriuchykhin da26d8a018
Merge pull request #2304 from okriuchykhin/ok_SCI_4204 
Refactor repository cell cloning to support all data types [SCI-4204]
 2020-01-15 13:04:50 +01:00
Oleksii Kriuchykhin 9e8bd23616 Merge latest branch 'develop' into ok_SCI_3988 2020-01-15 10:52:20 +01:00
Oleksii Kriuchykhin eed68a2590 Refactor repository cell clonning to support all data types [SCI-4204] 2020-01-14 16:55:10 +01:00
Oleksii Kriuchykhin 7b82e33eb6 Fix repository filtering and improve speed [SCI-4224] 2020-01-13 16:09:07 +01:00
Oleksii Kriuchykhin 522ae12f08 Merge branch 'develop' into ok_SCI_3988 2020-01-07 17:07:22 +01:00
Oleksii Kriuchykhin 1b902ff4b3 Merge branch 'develop' into ok_SCI_3988 2020-01-07 15:26:30 +01:00
Oleksii Kriuchykhin 3e82b1ae89 Fix migrations [SCI-3988] 2020-01-07 13:43:32 +01:00
aignatov-bio 725bb449d5 Fix naming 2019-12-23 09:20:36 +01:00
aignatov-bio 54800cb69b Merge branch 'features/new-column-types' into ai-sci-4168-refactor-checklist-model 2019-12-20 15:46:39 +01:00
aignatov-bio 16c4879e56 Merge migrations and update sorting 2019-12-20 15:42:54 +01:00
aignatov-bio dc91893d7e Refactor checklist column data structure 2019-12-18 14:10:41 +01:00
Urban Rotnik 7153711570 Move delimiter from column to metadata 2019-12-18 10:22:52 +01:00
aignatov-bio 7fc9c0d1e4 Adding frontend for checklist edit mode 2019-12-10 15:58:59 +01:00
Mojca Lorber 1c342d1d26 structure changes 2019-12-10 13:52:55 +01:00
Mojca Lorber a3a5b21951 small fixes 2019-12-10 12:02:08 +01:00
Mojca Lorber 8503dd7007 Add numeric repository column type 2019-12-09 16:38:21 +01:00
aignatov-bio 09079fbcda Fix naming and tests 2019-12-09 13:48:36 +01:00
aignatov-bio d8676596f1 Add checklists column type 2019-12-09 13:48:36 +01:00
Urban Rotnik e934e08c17 Implement STI for DateTimeValue types 2019-12-06 12:50:19 +01:00
Urban Rotnik f39af1916f Split DateTime and DateTimeRange column types, rename DateType table 2019-11-29 10:19:16 +01:00
Urban Rotnik b9935ce7de structure.sql fix 2019-11-29 10:19:15 +01:00
Urban Rotnik 2a20ad68a3 Add range column to RepositoryColumn 2019-11-29 10:19:14 +01:00
Urban Rotnik b591346a3f Add DateTime type column 2019-11-29 10:19:13 +01:00
Urban Rotnik b2ce600820 Add delimiter column for repository_column 2019-11-29 10:19:10 +01:00
Urban Rotnik 24acf1f84b Fix edit mode for File and Text 2019-11-29 10:19:08 +01:00
Urban Rotnik c00a837105 Add models for RepositoryStatus column type 2019-11-29 10:16:43 +01:00
Oleksii Kriuchykhin b2862b6c9e Remove Paperclip DB columns and fix experiment templates [SCI-3988] 2019-11-18 14:16:28 +01:00
aignatov-bio 0801df6f9c Fix structure.sql 2019-11-18 13:59:55 +01:00
aignatov-bio f428bc3921 Remove schema.rb 2019-11-18 13:59:55 +01:00
aignatov-bio 8fd4b46416 Fix migration conflict 2019-11-18 13:59:55 +01:00
aignatov-bio cb5baa3d13 Fix migration 2019-11-18 13:59:54 +01:00
aignatov-bio b1f9e7f1ca Fix global activities jsonb field [SCI-3830] (#2030) 
* Fix global activities jsonb field

* Fix tests
 2019-11-18 13:59:54 +01:00
Oleksii Kriuchykhin 53402c9ce1 Fix images in reports, impove speed of report generation [SCI-3990][SCI-3993] 2019-10-17 13:30:14 +02:00
Miha Mencin e68b8f55c2
skip individual checking 2019-10-09 18:00:06 +02:00
Miha Mencin 2ef095b003
Additional check for attached workflowimages 2019-10-09 17:17:33 +02:00
Oleksii Kriuchykhin de33cb5751 Rename prepared statement for experiment files migration [SCI-3949] 2019-10-09 17:04:43 +02:00
Oleksii Kriuchykhin 75ed617e34 Add AS migration for existing experiment images [SCI-3949] 2019-10-09 16:47:32 +02:00
Oleksii Kriuchykhin ab395f46d0 Add paperclip for backward compatibility [SCI-3949] 2019-10-09 10:28:02 +02:00
Oleksii Kriuchykhin 52bbf6740d Remove paperclip attachments from migrations [SCI-3908] 2019-10-03 13:59:17 +02:00
Alex Kriuchykhin 2c3c690713
Merge pull request #2113 from okriuchykhin/ok_SCI_3839 
Remove the deprecated foreign keys from TinyMceAsset [SCI-3839]
 2019-10-02 10:39:35 +02:00
Oleksii Kriuchykhin efe5d8a6ea Remove the deprecated foreign keys from TinyMceAsset [SCI-3839] 2019-10-01 15:49:37 +02:00
Oleksii Kriuchykhin f00f594dbf Improve ActiveStorage migrations [SCI-3854] 2019-10-01 12:45:51 +02:00
Urban Rotnik 60a414c4ec Change migrations order back 2019-09-27 16:20:56 +02:00
Jure Grabnar c748513ca9 Rename Active storage migration to a later date 2019-09-26 13:55:30 +02:00
Oleksii Kriuchykhin b841d3dd6b Add override for ActiveStorage downloader to handle missing file checksums [SCI-3888] 2019-09-18 15:34:49 +02:00
aignatov-bio 64306cfb2a
Fix active storage migration script (#2060) 
* Fix active storage migration script

* Update check logic
 2019-09-18 09:20:04 +02:00
Oleksii Kriuchykhin 0475394b08 Fix test [SCI-3881] 2019-09-16 13:03:41 +02:00
Oleksii Kriuchykhin 3509543e7b Merge branch 'master' into ok_SCI_3881 2019-09-16 11:56:49 +02:00
Oleksii Kriuchykhin bc38c6b29e Fix failing test [SCI-3745] 2019-09-16 10:26:13 +02:00
Oleksii Kriuchykhin c068901b00 Upgrade Rails to 6.0 [SCI-3745] 2019-09-12 17:24:08 +02:00
Oleksii Kriuchykhin 419a4c8e8c Update trim_html_tags Postgres function [SCI-3726] 2019-08-30 16:42:03 +02:00
Oleksii Kriuchykhin 267c53c2d2 Refactor inventory sharing logic [SCI-3803] 2019-08-29 17:21:49 +02:00
Luka Murn 68e3fed14c Remove uneccesary pg sql extension from db/schema.rb 2019-08-23 16:04:24 +02:00
Urban Rotnik 0ce331227c Update permission and model to share repository over all teams 2019-08-13 14:07:24 +02:00
Urban Rotnik 1a77702fa7 Add uniq index for Repository and Team in TeamRepositories 2019-08-09 14:13:00 +02:00
Urban Rotnik f569411bc7 Add TeamRepository model 2019-08-09 14:12:59 +02:00
Oleksii Kriuchykhin d52df56fc4 Fix production build and update packages [SCI-3678] 2019-08-08 14:03:15 +02:00
Jure Grabnar aa5431b153 Fix broken migrations 2019-08-05 18:22:07 +02:00
Luka Murn 6017f40cef Add migration to remove samples' associated data from DB 2019-07-26 10:28:05 +02:00
Luka Murn 83bb89fdf5 Cherry-picked commit from ZZ (and LM)'s various changes 2019-07-26 10:13:14 +02:00
Anton Ignatov ffd415d409 Inital refactor for Assets model 2019-07-12 15:02:06 +02:00
Anton Ignatov 57a273d5d0 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 11:34:41 +02:00
Oleksii Kriuchykhin 9d926dc956 Refactor TinyMce assets, user avatars, zip files [SCI-3539] 2019-07-05 16:56:05 +02:00
Anton Ignatov c9ae9f056e Merge branch 'okriuchykhin-ok_SCI_3539' into features/marvinjs-integration 2019-07-01 10:44:29 +02:00
Oleksii Kriuchykhin 5acb16d43e Update Asset helper methods [SCI-3539] 2019-06-28 08:17:09 +02:00
Oleksii Kriuchykhin ba2daede0b Add migration scripts [SCI-3539] 2019-06-24 15:17:42 +02:00
Anton Ignatov 7e5c39d3e4 Merge branch 'master' into features/marvinjs-integration 2019-06-21 14:51:45 +02:00
aignatov-bio 9653f16196
Convert image to base64 in PDF reports [SCI-3557] (#1835) 
* Convert image to base64 in PDF reports

* Fix typo error
 2019-06-19 13:57:04 +02:00
Oleksii Kriuchykhin 109793c7fb Upgrade to Rails 5.2.3 and add ActiveStorage [SCI-3539] 2019-06-13 12:10:44 +02:00