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510 commits

Author SHA1 Message Date
Urban Rotnik
3e2c9934d0 Add SystemNotification model 
- SystemNotifiction model with spec
- UserSystemNotification model for many-many association
 2019-01-29 11:40:26 +01:00
Oleksii Kriuchykhin
f7b73c617a Fix code styling [SCI-2939] 2019-01-28 15:37:24 +01:00
Miha Mencin
4acd2a592d Adding previously forgotten schema file 2019-01-28 11:25:35 +01:00
Oleksii Kriuchykhin
bd2efa55ac Add templates business logic [SCI-2939] 2019-01-25 10:55:08 +01:00
Miha Mencin
6e16a63dcd implementing suggestion from alex, now table and indices names are hardoced 2019-01-21 11:02:33 +00:00
Miha Mencin
7ade88cf92 SCI-2936 code style final 2019-01-18 09:38:04 +01:00
Miha Mencin
70b1852d64 SCI-2936 code style 2019-01-18 09:33:45 +01:00
Miha Mencin
2271e453df SCI-2936 minor refactor and code styling 2019-01-18 09:25:32 +01:00
Miha Mencin
f6230b2c9a SCI-2936 added down method, make code more readable 2019-01-17 18:10:45 +01:00
Miha Mencin
4a6459000f SCI-2936 added migration 2019-01-17 17:54:15 +01:00
Alex Kriuchykhin
aac5c101a5
Merge pull request #1431 from okriuchykhin/ok_SCI_2864 
Improve user's variables migration [SCI-2864]
 2018-12-19 19:19:23 +01:00
Oleksii Kriuchykhin
90b46c665d Refresh user's model in variables migration [SCI-2864] 2018-12-19 19:03:10 +01:00
Oleksii Kriuchykhin
70cc3742ad Improve user's variables migration [SCI-2864] 2018-12-19 18:30:27 +01:00
Alex Kriuchykhin
ab0924c8e6
Merge pull request #1415 from okriuchykhin/ok_SCI_2864 
Use built-in methods for Postgres extensions enabling [SCI-2864]
 2018-12-16 19:45:56 +01:00
Oleksii Kriuchykhin
311189a2e9 Replace reports materialized view with normal queries and re-enable fragment caching [SCI-2894] 2018-12-13 11:18:09 +01:00
Oleksii Kriuchykhin
7cd1c12a4f Use built-in methods for Postgres extensions enabling [SCI-2864] 2018-12-10 14:14:49 +01:00
Luka Murn
e9c0b34662 Merge branch 'core-api' into 'master' 
Conflicts:
	Gemfile
	app/services/api.rb
	config/initializers/api.rb
	config/initializers/extends.rb
	config/routes.rb
	db/schema.rb
	spec/controllers/api/api_controller_spec.rb
 2018-11-14 16:59:04 +01:00
Luka Murn
84df2c81f9 Merge branch 'features/export-all' 
Conflicts:
	app/controllers/experiments_controller.rb
	app/controllers/my_modules_controller.rb
	db/schema.rb
 2018-11-13 09:14:02 +01:00
Oleksii Kriuchykhin
02f536cd08 Merge latest features/export-all [SCI-2733] 2018-10-16 17:20:19 +02:00
Jure Grabnar
2558b7a313 Fix formatting according to HoundBot 2018-10-16 11:00:38 +02:00
Jure Grabnar
26df1e5a98 Add export project modal 
Closes [SCI-2645]
 2018-10-16 11:00:38 +02:00
Oleksii Kriuchykhin
af02f29fb5 Implement user state saving for projects overview [SCI-2733] 2018-10-10 16:15:31 +02:00
Oleksii Kriuchykhin
49e788a9ad Mergre latest core-api [SCI-2515] 2018-09-14 10:24:05 +02:00
Luka Murn
586a442abc Refactor the settings page, rename setting to tooltips_enabled 2018-09-05 16:36:32 +02:00
Oleksii Kriuchykhin
ecde634a2c Add OAuth2 provider [SCI-2515] 2018-08-17 13:17:59 +02:00
Oleksii Kriuchykhin
4df9a4c9ca Fix code style warnings [SCI-2614][SCI-2616][SCI-2617] 2018-08-08 17:01:49 +02:00
Oleksii Kriuchykhin
938ec5acb8 Change primary key to bigint on repositories [SCI-2614][SCI-2616][SCI-2617] 2018-08-08 17:01:49 +02:00
zmagod
b45717185a removes unneeded migrations 2018-05-28 13:12:27 +02:00
zmagod
b13e39a0d9 adds discard gem, move deletion of repositories in a rake task to run in background worker [fixes SCI-2448] 2018-05-24 14:39:25 +02:00
zmagod
b8098093ee migrations that fixes the bug with smart annotations [fixes SCI-2426] 2018-05-18 13:57:52 +02:00
zmagod
9d282d1800 adds new reports index page [fixes SCI-2124] 2018-04-18 16:47:52 +02:00
Oleksii Kriuchykhin
a105e61d48 Remove tutorial [SCI-1860] 2018-03-18 13:18:05 +01:00
mlorb
64e26e1c60 add file custom column type to db 2018-03-09 17:04:54 +01:00
Oleksii Kriuchykhin
66c1901f96 Fix migration for better search [SCI-2108] 2018-03-09 15:46:38 +01:00
zmagod
d12f8403e4 add reference to repository column 2018-02-12 09:05:41 +01:00
zmagod
ae99c92516 follow @okriuchykhin 's suggestions 2018-02-09 16:28:21 +01:00
zmagod
557aeca049 refactor relations 2018-02-09 14:11:56 +01:00
zmagod
7c13c5a1f4 fixes typo, follows @okriuchykhin 's suggestions 2018-02-09 11:38:52 +01:00
zmagod
6b7ff11bcf setup models for repository list column [fixes SCI-2015] 2018-02-07 15:28:28 +01:00
Zmago Devetak
4716fc7752
Merge pull request #955 from biosistemika/decoupling 
Decoupling
 2018-01-25 11:33:06 +01:00
zmagod
88d7429041 1. fixes failing unit and integration tests 
2. fixes gem dependencies issues
3. fixes failing migrations
4. updates depricated factory_girl => factory_bot and fixes related issues

Signed-off-by: zmagod <zmago_devetak@yahoo.com>
 2018-01-23 14:54:15 +01:00
zmagod
f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
Oleksii Kriuchykhin
d1a515da90 Allow first user seeding from env variables [SCI-1949] 2018-01-18 16:23:33 +01:00
Luka Murn
cf291bf887 Merge branch 'gilson-iot-rails4' 
Conflicts:
	Gemfile.lock
 2017-12-19 10:56:39 +01:00
Oleksii Kriuchykhin
6256acdfea Rename notifications settings accessor [SCI-1864] 2017-12-07 13:59:33 +01:00
Oleksii Kriuchykhin
84f4aba213 Pull latest master into gilson-iot-rails4 2017-11-15 15:15:26 +01:00
mlorb
126f278308
Merge pull request #853 from Zanz2/ZZ_import_protocolsio_json 
Scinote protocols IO base branch
 2017-11-06 14:53:01 +01:00
Zanz2
04c6f0c20d schema missing space 2017-11-03 21:50:06 +01:00
Zanz2
0dc0109d91 reverted schema 2017-11-03 21:47:52 +01:00
zmagod
55d05b013b fix typo 2017-11-03 10:11:23 +01:00
zmagod
3d22a5404d add scenic gem, teams datatables sql view 2017-10-26 16:59:00 +02:00
Zanz2
49501b3d3d Finished review refactor 2017-10-24 19:24:53 +02:00
Luka Murn
6c2c5aff17 Additional fixes required by latest merge from master 2017-10-23 09:51:13 +02:00
Luka Murn
8254153bb9 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile
	Gemfile.lock
	app/models/connection.rb
	app/models/experiment.rb
	app/models/my_module.rb
 2017-10-23 08:57:57 +02:00
Oleksii Kriuchykhin
6820511ea0 Further canvas optimizations [SCI-1642] 2017-10-06 12:43:27 +02:00
Oleksii Kriuchykhin
b26b963e54 Optimize update canvas SQL and remove module group name [SCI-1642] 2017-10-05 16:19:25 +02:00
Zanz2
b7432b336a added file upload popup modal, rails routes and controller functions, deleted old standalone model and controller 2017-09-13 15:15:08 +02:00
Luka Murn
e5bfb3c42d Rollback migration version 2017-09-01 09:06:25 +02:00
Oleksii Kriuchykhin
c3fceb90df Backport API to Rails-4 [SCI-1579] 2017-08-30 13:30:41 +02:00
Luka Murn
c62002381b Add default settings migration and concern 2017-08-10 11:30:57 +02:00
Zmago Devetak
a423315800 Merge pull request #729 from ZmagoD/zd_SCI_1418 
fixes bug with devise_security_extension [fixes SCI-1418]
 2017-07-25 14:36:05 +02:00
Luka Murn
9f60ece25f Merge branch 'master' into rails-5.1 
Conflicts:
	app/models/repository.rb
	app/models/repository_row.rb
	app/views/projects/index.html.erb
	app/views/shared/_secondary_navigation.html.erb
 2017-07-06 15:12:15 +02:00
zmagod
de78a1681a fixes bug with devise_security_extension [fixes SCI-1418] 2017-07-04 11:14:25 +02:00
zmagod
6dd21e87a7 fixes bug with indexes 2017-07-03 14:48:13 +02:00
zmagod
bc33883c3c first run fixing addons 2017-06-30 10:23:28 +02:00
Oleksii Kriuchykhin
4060ba2ac3 Code style fixes [SCI-1356] 2017-06-27 13:23:51 +02:00
Oleksii Kriuchykhin
e038bc58fa Add global search in custom repositories [SCI-1356] 2017-06-23 16:12:56 +02:00
Luka Murn
9e45d197df Change some stuff for repos to work, fix some bugs 
Closes SCI-1279.
 2017-06-07 18:07:49 +02:00
Luka Murn
02dd6636ba Allow saving & editing of reports with repository elements 
Closes SCI-1279.
 2017-06-07 16:55:00 +02:00
Luka Murn
bb20d2661f Add association between repository rows & my modules 2017-06-07 16:54:32 +02:00
Oleksii Kriuchykhin
ad8dd6d740 PR fixes [SCI-1274] 2017-06-07 15:23:25 +02:00
Oleksii Kriuchykhin
8b1190060e Add custom repository table [SCI-1274] 2017-06-07 15:23:25 +02:00
Luka Murn
fcc3995049 Merge pull request #647 from biosistemika/master 
Bring latest master changes into custom-repositories
 2017-05-30 14:18:14 +02:00
Oleksii Kriuchykhin
85e81e9ea2 Improve repository models and migration [SCI-1267] 2017-05-17 10:04:07 +02:00
Oleksii Kriuchykhin
72a651c7de Add migrations and models for custom repositories [SCI-1267] 2017-05-16 15:27:36 +02:00
Matej Zrimšek
ba693c65a8 Fixed adding contents to report logic and removed unneeded code. [fixes SCI-487] 2017-05-15 18:20:42 +02:00
zmagod
c35e2a4860 adds persistence to experiments order in project overview [fixes SCI-974] 2017-05-15 09:54:37 +02:00
Zmago Devetak
4b816f5322 Merge pull request #568 from ZmagoD/zd_SCI_1119 
Add images to fields with rich text formatting
 2017-05-08 13:06:58 +02:00
zmagod
ed24448817 adds relation to team, adds rake task to delete obsolete images [fixes SCI-1203] 2017-04-25 14:24:05 +02:00
zmagod
1fefeee3d1 adds team space related methods 2017-04-25 13:44:31 +02:00
zmagod
66f43803c0 refactor, fix user annotation bug 2017-04-24 16:22:25 +02:00
zmagod
55c8c498e2 add image upload functionality to result text 2017-04-24 12:28:27 +02:00
zmagod
550f563666 working version for steps first run 2017-04-21 16:09:04 +02:00
Mojca Lorber
b1e939e715 add experiment to activities 2017-04-20 13:16:11 +02:00
zmagod
0757563d02 adds step tiny_mce asset relation 2017-04-19 17:22:57 +02:00
okriuchykhin
0fe84c4e24 Merge pull request #550 from okriuchykhin/ok_SCI_1157 
Improve speed of search [SCI-1157]
 2017-04-12 13:11:26 +02:00
Oleksii Kriuchykhin
de5043717f Fix hound warnings and rename migration [SCI-1157] 2017-04-12 13:09:04 +02:00
Oleksii Kriuchykhin
07d658ab82 Improve speed of search [SCI-1157] 2017-04-11 14:55:44 +02:00
Mojca Lorber
a1bc26f549 fix hound 2017-04-10 10:45:56 +02:00
Mojca Lorber
cf57c5dc87 fix default value for position of checklist items 2017-04-07 14:35:47 +02:00
Oleksii Kriuchykhin
18dcbe4e54 Remove default value for role in UserProject [SCI-1152] 2017-04-04 17:19:26 +02:00
Oleksii Kriuchykhin
42ccefe2ce Remove logs table and old unused logging code [SCI-1127] 2017-03-30 11:47:57 +02:00
zmagod
0996c14449 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_765 2017-03-27 10:41:58 +02:00
Oleksii Kriuchykhin
2edebb282a Add team_id field to assets and tables [SCI-1046] 2017-03-23 10:36:55 +01:00
zmagod
4385c68f5f adds zip_export utility first run 2017-03-21 16:15:11 +01:00
zmagod
7b16e5643e fix assets preprocesor for wopi files 2017-03-13 13:20:49 +01:00
zmagod
0c2523beca Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-03-10 16:21:43 +01:00
Oleksii Kriuchykhin
0f8336e5a5 Refactoring of the comments using STI [SCI-1090] 2017-03-08 13:18:20 +01:00
okriuchykhin
95af5001ab Merge pull request #484 from okriuchykhin/ok_SCI_1004 
Add global settings base class [SCI-1004]
 2017-02-21 13:20:24 +01:00
Oleksii Kriuchykhin
2aba0f46a6 Add global settings base class [SCI-1004] 2017-02-20 15:11:57 +01:00
Oleksii Kriuchykhin
cf8566df33 Add task complete/uncomplete functionality [SCI-999] 2017-02-10 14:27:20 +01:00
zmagod
be5faad97c fixes hound 2017-01-31 13:33:55 +01:00
zmagod
61b260fb8a fixes bug in protocol management 2017-01-27 11:01:44 +01:00
zmagod
0a6bb958a5 renamed organization to teams in migrations/rake tasks 2017-01-27 10:39:57 +01:00
zmagod
c7b03926c0 rename migrations part 1 2017-01-26 16:30:31 +01:00
zmagod
883a6ea544 rename organizations in test/ 2017-01-25 13:56:43 +01:00
zmagod
9624a17298 rename database tables, columns 2017-01-24 16:07:22 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
Mojca Lorber
6653f0d4c1 small fixes 2017-01-19 16:42:14 +01:00
Mojca Lorber
b3c423c582 add table name in protocol step 2017-01-18 14:22:18 +01:00
Luka Murn
cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
Luka Murn
488613afcc Add index to users' full name attribute 2017-01-05 16:26:49 +01:00
zmagod
8cd092b521 update schema 2017-01-03 16:51:02 +01:00
zmagod
a434649f42 Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-01-03 16:35:25 +01:00
zmagod
e554fdf805 code refactor 2016-12-21 16:52:15 +01:00
Zmago Devetak
c8631077df Merge pull request #361 from biosistemika/improved-sample-table 
Improved sample table
 2016-12-16 15:37:54 +01:00
zmagod
de3099e4d1 removes asset_helper, fixes loading of processed thumbnails in results and steps and when loading protocols from repository 2016-12-09 13:59:49 +01:00
Mojca Lorber
7d88e247fc refactoring 2016-12-08 14:41:35 +01:00
Mojca Lorber
195055f9cf change SAMPLES_TABLE_DEFAULT_STATE 2016-12-07 14:51:34 +01:00
Mojca Lorber
39b6fa66fe add SamplesTable for new users 2016-12-07 14:14:32 +01:00
Mojca Lorber
332b6c58da fix hound 2016-12-05 11:44:47 +01:00
Mojca Lorber
01e75fbbcc create samples table model and migration 2016-12-05 11:08:33 +01:00
Matej Zrimšek
46465060d0 Added automatic sign in with token authentication, needed when signing in from different webpage. [closes SCI-689] 2016-11-30 16:56:56 +01:00
Nejc Bernot
cb03ed8384 Users can now have multiple tokens 
A new token is generated whenever an edit or view file is called. Tokens have a TTL of one day.
Also enabled the toggling of both wopi and wopi test mode, using environmental variables.
 2016-11-30 16:48:42 +01:00
Luka Murn
5035ec338b Code style fix 2016-11-28 13:51:28 +01:00
Luka Murn
a7f8aad62c Fix Hound errors 2016-11-25 16:53:38 +01:00
Luka Murn
c1c73ad804 Update schema.rb 2016-11-25 16:51:39 +01:00
Luka Murn
7658ae264a Add uniqueness to sample_type & sample_group name 
Closes SCI-720.
 2016-11-25 16:15:05 +01:00
Luka Murn
d255e12f90 Migration hotfix 2016-10-18 12:52:14 +02:00
mz3944
47707779c0 Merge pull request #221 from mz3944/mz_migration_constant_qfix 
Fixed missing namespace in constant in migration.
 2016-10-18 11:42:08 +02:00
Matej Zrimšek
796e7da133 Fixed missing namespace in constant in migration. 2016-10-18 11:36:33 +02:00
zmagod
557957c857 fixed issue with mozilla browsers 2016-10-17 15:21:19 +02:00
zmagod
a116feac9c fixed typos and added truncation to org name 2016-10-17 15:21:19 +02:00
zmagod
e85ed788f2 fixed user_generator 2016-10-17 15:10:26 +02:00
zmagod
e092679ef6 fixes schema 2016-10-17 15:10:26 +02:00
zmagod
d86a4dd311 setup global team switch view and controller action 2016-10-17 15:10:26 +02:00
Matej Zrimšek
0780bd2416 Ruby constants are now automatically available in JS. Refactoring was needed. 2016-10-17 11:57:37 +02:00
Mojca Lorber
42f6b679f8 Adding system notifications email function in settings 2016-10-12 11:50:26 +02:00
Oleksii Kriuchykhin
5399033fce Added user settings for email notifications [SCI-443] 2016-10-11 16:43:17 +02:00
Luka Murn
c37885692d Add DB index onto checked field of user_notifications 2016-10-05 16:21:13 +02:00
zmagod
9c7a690944 fixed type, fixed settings controller, fixes setting view on mobile devices 2016-10-05 14:33:22 +02:00
zmagod
a68e7abc57 first run notification settings 2016-10-04 15:52:48 +02:00
zmagod
e1a1b93d44 fixed migrations 2016-09-29 14:49:58 +02:00
zmagod
485497334d generated notification related migrations and model tests 2016-09-28 14:18:52 +02:00
Jure Grabnar
5aea0fbb19 Refactor the rest of WOPI logic from Nejc 2016-09-28 09:33:44 +02:00
Nejc Bernot
1b260785ec First working version of office integration 
Only works on scinote-preview
 2016-09-28 09:33:44 +02:00
Nejc Bernot
b2b1d5a8f5 Initial commit of WOPI integration 2016-09-28 09:33:44 +02:00
Luka Murn
bd414c8b4f Update a problematic migration 2016-08-31 11:46:27 +02:00
zmagod
7abc8f3a90 Merge branch 'master' into experiment-level 2016-08-17 09:28:35 +02:00
Jure Grabnar
9865ad80f9 Fix migration for adding attachment to experiment 2016-08-10 08:53:59 +02:00
scibb
5dd5f1cc28 another tab replaced with 2-spaces... 2016-08-10 08:49:18 +02:00
scibb
6b0b2b0df7 tabs replaced with 2-spaces 2016-08-10 08:36:58 +02:00
scibb
a6d39762db the migration to update canvas coordinates 2016-08-09 10:04:10 +02:00
zmagod
1a56396eb5 add workflow image to project overview page [fixes SCI-41] 2016-08-08 16:02:17 +02:00
Jure Grabnar
8b2b134614 Migrate old reports to new experiment level reports 2016-08-04 13:19:46 +02:00
Jure Grabnar
964b51f84a Add experiment reports element 2016-08-03 12:52:52 +02:00
Luka Murn
3187843d14 Change updated_by -> last_modified_by 2016-07-25 14:47:13 +02:00
Luka Murn
785fb2cba1 Initial migration & changes in ActiveRecords 2016-07-22 10:43:55 +02:00
Luka Murn
076b67620f Migration GitLab -> GitHub 2016-07-21 13:11:15 +02:00
Luka Murn
055298fee8 Initial commit. 2016-02-12 16:52:43 +01:00