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2762 commits 70 branches 179 tags 165 MiB
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910 commits

Author SHA1 Message Date
Mojca Lorber da98788031 small code fixes 2017-06-06 09:57:50 +02:00
Mojca Lorber 13bf4ad229 create new repository 2017-06-06 09:54:39 +02:00
Luka Murn f382c04f01 Refactor JS code a bit 
Closes SCI-1323.
 2017-06-06 08:02:01 +02:00
Luka Murn 1712fc0611 Fix bug with protocol preview modal not working in protocol repo 
Closes SCI-1323.
 2017-06-05 17:10:13 +02:00
Matej Zrimšek 2c6ad4aa05 Refactored modal popups for repositories to make them general. [fix 1269] 2017-06-05 14:13:24 +02:00
zmagod ab4961ddb1 adds overlay partial 2017-06-05 11:31:05 +02:00
zmagod 67d902db52 refactor 2017-06-05 10:43:58 +02:00
Matej Zrimšek d8d54232c3 After repository renaming user is redirected to the same repository. Removed the unimplemented repository copy dropdown option. [SCI-1269] 2017-06-02 19:08:51 +02:00
Matej Zrimšek c82fd66146 Removed unneeded utility JS function. [SCI-1269] 2017-06-02 17:52:04 +02:00
Matej Zrimšek f8258812ef Repository remove and rename refactoring. [SCI-1269] 2017-06-02 17:50:34 +02:00
Matej Zrimšek 21a72da84f Added rename logic and improved remove logic. [SCI-1269] 2017-06-02 17:50:34 +02:00
Matej Zrimšek cdaac6a01b Added remove repository modal logic. [SCI-1269] 2017-06-02 17:50:33 +02:00
Matej Zrimšek 791bb934ca Remove repository modal logic (WIP). [SCI-1269] 2017-06-02 17:50:33 +02:00
zmagod 1c021b11db adds drag and drop files upload to steps [fixes SCI-1310] 2017-06-02 16:34:09 +02:00
ajugo a9bd86352d Step: wrong last columns of table [fixes SCI-405] (#600) 
* Step: wrong last two columns of table after add table results [fixes SCI-405]

* Changing double quotes to single

* Adding empty line back
 2017-06-01 15:52:02 +02:00
Luka Murn fcc3995049 Merge pull request #647 from biosistemika/master 
Bring latest master changes into custom-repositories
 2017-05-30 14:18:14 +02:00
zmagod b527afd12b generates samples csv file in background job [fixes SCI-1278] 2017-05-29 14:42:55 +02:00
Zmago Devetak 1df6265326 Merge pull request #627 from ZmagoD/zd_SCI_1280 
prevent to duplicate new step [fixes SCI-1280]
 2017-05-29 09:55:22 +02:00
zmagod 5806cb8e67 removes unneeded animateSpinner call 2017-05-29 09:10:11 +02:00
mz3944 9fe3b717c8 Merge pull request #626 from mz3944/mz-SCI-487 
Simplify "Add contents to report" popup
 2017-05-23 09:57:39 +02:00
Oleksii Kriuchykhin e99e3edb7b Add repositories dropdown to task navigation [SCI-1273] 2017-05-18 14:21:00 +02:00
ajugo 1abaefce4f At importing large sample file, error flash message appears [fixes SCI-903] (#625) 
* At importing large sample file, error flash message appears [fixes SCI-903]

* Changing double quotes to single

* Adding animatedSpinner
 2017-05-18 09:19:44 +02:00
Matej Zrimšek 20265ddd69 Readded result content modal for report creation and updated checkbox hierarchy logic accordingly. [fixes SCI-487] 2017-05-17 18:18:57 +02:00
Oleksii Kriuchykhin bbf6d38c50 Fix error handling in result_assets [SCI-1288] 2017-05-17 15:14:35 +02:00
zmagod b21923cf98 prevent to duplicate new step [fixes SCI-1280] 2017-05-16 11:52:07 +02:00
Matej Zrimšek 79ec3b5e4c Selected all checkboxes by default for result content adding modal and added disabling logic for dependent checkboxes. [fixes SCI-487] 2017-05-15 18:20:42 +02:00
Matej Zrimšek 901558c733 Made checkbox logic sitewide available and applied it to other content adding modals in report aswell. [fixes SCI-487] 2017-05-15 18:20:42 +02:00
Matej Zrimšek ba693c65a8 Fixed adding contents to report logic and removed unneeded code. [fixes SCI-487] 2017-05-15 18:20:42 +02:00
Matej Zrimšek b97cb91840 Refactoring of modal for adding content to report. [fixes SCI-487] 2017-05-15 17:43:12 +02:00
Matej Zrimšek 27cfd55ea5 Simplified popup modal for adding contents to report. [fixes SCI-487] 2017-05-15 17:43:12 +02:00
zmagod 9bec7dd96e Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1248 2017-05-15 14:49:37 +02:00
zmagod d34b2520b5 refactor results javascript, fixes bug with results archive [fixes SCI-1262] prevents duplicate request [fixes SCI-1248] 2017-05-12 15:59:58 +02:00
zmagod 070a829c49 change new results hendlers 2017-05-12 10:02:33 +02:00
zmagod 81a3cb0a41 adds results js code in modules 2017-05-11 16:54:28 +02:00
mlorb 219921ee33 Merge pull request #612 from mlorb/ml_sci_1250 
Fix sample page bugs when editing column name [SCI-1250]
 2017-05-11 13:48:20 +02:00
okriuchykhin 328c9292b1 Merge pull request #606 from okriuchykhin/ok_SCI_1235 
Fix error messages display during file upload in steps and results [SCI-1235]
 2017-05-11 13:00:36 +02:00
Mojca Lorber 86bc6adc2a fix lost column updated name at sample page and bug with another user not able to view column dropdown 2017-05-11 11:16:12 +02:00
zmagod 2081e0a94b Merge branch 'master' of https://github.com/biosistemika/scinote-web into release-1.10.1 2017-05-10 15:14:17 +02:00
zmagod a4032f5cc6 first run 2017-05-10 13:53:32 +02:00
Oleksii Kriuchykhin 52ad5ecdc2 Fix error messages display during file upload in steps and results [SCI-1235] 2017-05-09 17:13:47 +02:00
Oleksii Kriuchykhin 620a989a2f Improve view of badges on experiment canvas [SCI-152] 2017-05-09 14:07:23 +02:00
okriuchykhin ccc640f2bc Merge pull request #593 from okriuchykhin/ok_SCI_1158 
Add advanced search options [SCI-1158]
 2017-05-09 10:23:34 +02:00
okriuchykhin bd0b930382 Merge pull request #598 from okriuchykhin/ok_SCI_152 
Add counters for users and comments on canvas [SCI-152]
 2017-05-09 10:22:53 +02:00
Oleksii Kriuchykhin bd5a48b9c8 Improve code style [SCI-1158] 2017-05-08 18:00:14 +02:00
Oleksii Kriuchykhin 344b9c290a Add counters for users and comments on canvas [SCI-152] 2017-05-08 17:32:55 +02:00
okriuchykhin f292dab3b5 Merge pull request #594 from okriuchykhin/ok_SCI_1029_v2 
Change color of loading animation in reports [SCI-1029]
 2017-05-08 13:35:00 +02:00
Zmago Devetak 4b816f5322 Merge pull request #568 from ZmagoD/zd_SCI_1119 
Add images to fields with rich text formatting
 2017-05-08 13:06:58 +02:00
Oleksii Kriuchykhin 3f60439948 Change color of loading animation in reports [SCI-1029] 2017-05-08 11:02:51 +02:00
Oleksii Kriuchykhin 0ee7e11620 Add advanced search options [SCI-1158] 2017-05-05 16:41:23 +02:00
mlorb 4c85ac7bf5 Merge pull request #588 from mlorb/ml_sci_191 
Add information how many samples are selected [SCI-191]
 2017-05-05 15:24:16 +02:00
Zmago Devetak de3d1172c1 Merge pull request #584 from ZmagoD/zd_SCI_1200 
add popup for approval to complete the Task [fixes SCI-1200]
 2017-05-05 14:57:27 +02:00
Mojca Lorber 45baba1803 fix zmago the hound 2017-05-04 16:46:52 +02:00
Mojca Lorber ad9497a638 add information how many samples are selected 2017-05-04 16:30:29 +02:00
zmagod f784844472 fixes bug with empty checklist item [fixes SCI-1233] 2017-05-04 16:15:00 +02:00
zmagod acc5594f1b add popup for approval to complete the Task [fixes SCI-1200] 2017-05-04 12:41:22 +02:00
Mojca Lorber f8f6a5f63a fix bug edit canvas not working and fix positioning of cloned task/workflow 2017-05-04 10:54:50 +02:00
zmagod 5b58824ec0 refactor 2017-05-03 15:30:08 +02:00
ajugo 41df727e57 Merge pull request #569 from rekonder/aj-SCI-1130 
Fix error with close on reports
 2017-05-03 12:27:42 +02:00
ajugo 081aa4aea7 Merge pull request #570 from rekonder/aj-SCI-1088 
My profile - avatar size fix [SCI-1088]
 2017-05-03 12:27:05 +02:00
Oleksii Kriuchykhin d3fb688fce Change color of turbolinks progress bar [SCI-1029] 2017-04-26 15:04:29 +02:00
Matej Zrimšek 8ad52354eb Used locales instead of hardcoded values for intro.js tutorial popup. 2017-04-25 16:03:50 +02:00
Matej Zrimšek e8bc9542cc Removed some unneeded intro.js tutorial code. 2017-04-25 16:03:50 +02:00
Matej Zrimšek a6573bd508 Next button is now always focused when navigating through tutorial steps. [fixes SCI-719] 2017-04-25 16:03:50 +02:00
Matej Zrimšek a5cffd06f3 Removed all tutorial data from ERB, so that all tutorial code is in JS. [needed for fixing SCI-719] 2017-04-25 16:03:50 +02:00
Mojca Lorber 49574e7a06 remove behavior of not allowing the empty tables in steps 2017-04-25 10:21:16 +02:00
rekonder b93edac3b9 My profile - avatar size fixes [SCI-1088] 2017-04-25 10:02:00 +02:00
zmagod 66f43803c0 refactor, fix user annotation bug 2017-04-24 16:22:25 +02:00
rekonder dc46a7b650 Fix error with close on reports 2017-04-24 16:02:30 +02:00
zmagod 55c8c498e2 add image upload functionality to result text 2017-04-24 12:28:27 +02:00
zmagod 550f563666 working version for steps first run 2017-04-21 16:09:04 +02:00
Mojca Lorber cf00ecd62e new experiment redirection 2017-04-20 17:55:28 +02:00
zmagod c25df63a14 add tinymce img importer and refactor input sanitize helper 2017-04-19 09:11:52 +02:00
Matej Zrimšek 57b6b9402d Experiment description is inside of box for every supported browser. [fixes SCI-860] 2017-04-18 16:44:01 +02:00
okriuchykhin 3d805d529d Merge pull request #554 from okriuchykhin/ok_SCI_877 
Add image preview to protocol repository [SCI-877]
 2017-04-18 08:58:39 +02:00
Zmago Devetak cb1ad9e0be Merge pull request #555 from ZmagoD/zd_SCI_1103 
adds additional explanations [fixes SCI-1103]
 2017-04-13 15:15:08 +02:00
zmagod 0987cf8abc fixes hound alerts 2017-04-13 14:55:18 +02:00
mlorb ddc0e86c92 Merge pull request #556 from mlorb/ml_sci_1174 
Fix bug with changing user own role from admin to normal user [SCI-1174]
 2017-04-13 14:33:58 +02:00
Zmago Devetak ec60044949 Merge pull request #548 from ZmagoD/zd_SCI_1129_v2 
Disables annimateSpiner in result assets actions
 2017-04-13 14:06:50 +02:00
zmagod f104444a0c adds additional explanations [fixes SCI-1103] 2017-04-12 16:56:47 +02:00
Mojca Lorber 27c661d7c4 fix bug with changing user own role from admin to normal user 2017-04-12 16:56:10 +02:00
Oleksii Kriuchykhin 181d981a51 Add image preview to protocol repository [SCI-877] 2017-04-12 16:05:38 +02:00
mlorb 2932052628 Merge pull request #549 from mlorb/ml_sci_1172 
Fix overlapping text in audit trail table [SCI-1172, SCI-1181]
 2017-04-12 15:10:48 +02:00
Mojca Lorber b09c18a9bc fix overlaping text in audit trail table 2017-04-11 14:29:31 +02:00
zmagod 929d8aab5e disables annimateSpiner in result assets actions 2017-04-10 15:40:36 +02:00
Zmago Devetak 91793c295a Merge pull request #542 from ZmagoD/zd_SCI_825 
Smart annotations and Notifications
 2017-04-10 15:10:17 +02:00
Luka Murn becdd687a6 Only require jquery-ui-sortable on samples page 
(hopefully) closes SCI-794.
 2017-04-07 13:05:22 +02:00
okriuchykhin aa776aaa71 Merge pull request #541 from okriuchykhin/ok_SCI_615 
Fix moving of the steps after adding a new one [SCI-615]
 2017-04-06 15:50:01 +02:00
zmagod f16607579f refactor steps annotation 2017-04-06 13:03:13 +02:00
Oleksii Kriuchykhin 5c0197220d Fix moving of the steps after adding a new one [SCI-615] 2017-04-06 12:53:21 +02:00
Mojca Lorber 5e62046627 remove ERROR from message 2017-04-05 14:40:55 +02:00
Mojca Lorber b222a34a97 fix hound 2017-04-04 15:38:16 +02:00
Mojca Lorber 715fafe58c fix bug with constants 2017-04-03 17:07:58 +02:00
mlorb 317739af1e Merge pull request #530 from biosistemika/ml_sci_1044 
Add data-hook and yadcf-filter plug-in [SCI-1044]
 2017-03-31 14:00:23 +02:00
Mojca Lorber a2c1ed6994 fix constants 2017-03-31 13:53:18 +02:00
Mojca Lorber 9458f391e5 add data-hook and yadcf-filter plug-in 2017-03-29 15:59:51 +02:00
Zmago Devetak 2b35b34eb8 Merge pull request #529 from ZmagoD/zd_SCI_1135 
fixes alert messages in samples [fixes SCI-1135]
 2017-03-29 14:57:11 +02:00
zmagod 9ce95470b3 fixes alert messages in samples [fixes SCI-1135] 2017-03-28 15:14:05 +02:00
zmagod 0996c14449 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_765 2017-03-27 10:41:58 +02:00
mlorb 3beb179f87 Merge pull request #514 from biosistemika/ml_sci_1089 
Add error messages to sample group/type edit/delete actions [SCI-1089]
 2017-03-27 09:57:32 +02:00
zmagod 023b3213e8 fixes email link [fixes SCI-765] 2017-03-24 12:10:07 +01:00
okriuchykhin 33544ec91d Merge pull request #521 from okriuchykhin/ok_SCI_1087 
Move flash message creation JS code to helper method [SCI-1087]
 2017-03-20 15:35:21 +01:00
Oleksii Kriuchykhin c715902058 Move flash message creation JS code to helper method [SCI-1087] 2017-03-17 17:58:53 +01:00
Mojca Lorber 83fa8570d7 refactoring 2017-03-17 17:52:15 +01:00
zmagod 95a0f596b7 adds file link 2017-03-17 16:40:57 +01:00
zmagod 52878e0989 fixed wopi buttons [fixes SCI-1110] 2017-03-16 15:38:11 +01:00
Mojca Lorber 4792bd87b9 fix error message when editing custom column on locked task 2017-03-15 14:09:44 +01:00
Mojca Lorber 7a4e3201e7 add error messages to sample group/type edit/delete actions 2017-03-14 17:32:25 +01:00
zmagod 7b16e5643e fix assets preprocesor for wopi files 2017-03-13 13:20:49 +01:00
zmagod 0c2523beca Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-03-10 16:21:43 +01:00
Luka Murn 800df7a26b Also make button icons work when rendering them via JS 
Closes SCI-1073.
 2017-03-08 13:55:10 +01:00
Luka Murn 4ddb139911 Fix padding of state buttons 
Closes SCI-1073.
 2017-03-03 16:36:52 +01:00
Luka Murn 42b773f180 Merge pull request #504 from Ducz0r/lm-sci-1078-fix 
Fix sample type groups edit color script [SCI-1078]
 2017-03-02 13:09:51 +01:00
Luka Murn 3599537e42 Fix sample type groups edit color script so it works properly now 
Closes SCI-1078.
 2017-03-01 09:09:44 +01:00
Luka Murn 2252b46afc Canvas should now properly work again 
Closes SCI-1057.
 2017-02-28 10:41:55 +01:00
okriuchykhin 986ad051a1 Merge pull request #496 from okriuchykhin/ok_SCI_873 
Improve image scaling in image preview [SCI-873]
 2017-02-23 09:30:56 +01:00
Oleksii Kriuchykhin cb588ed378 Improve image scaling in image preview [SCI-873] 2017-02-22 16:55:57 +01:00
okriuchykhin d30e149936 Merge pull request #493 from okriuchykhin/ok_SCI_739 
Lower z-index value for notification count icon [SCI-739]
 2017-02-22 16:48:39 +01:00
Oleksii Kriuchykhin a326fa374f Lower z-index value for notification count icon [SCI-739] 2017-02-22 14:35:07 +01:00
Zmago Devetak 58f97fdb5b Merge pull request #489 from ZmagoD/zd_SCI_1002_add_hook 
adds hook for lock task action
 2017-02-22 14:24:01 +01:00
zmagod 151dc79a81 adds hook for lock task action 2017-02-21 16:25:50 +01:00
Mojca Lorber 6b30f097f0 fix visual bug in edit avatar mode 2017-02-21 14:02:42 +01:00
okriuchykhin 8e18ff44a6 Merge pull request #479 from okriuchykhin/ok_SCI_999 
Add task complete/uncomplete functionality [SCI-999]
 2017-02-20 15:19:00 +01:00
Oleksii Kriuchykhin 218e96b1f0 Code style fixes [SCI-999] 2017-02-16 11:45:07 +01:00
Oleksii Kriuchykhin cf8566df33 Add task complete/uncomplete functionality [SCI-999] 2017-02-10 14:27:20 +01:00
Luka Murn f7bd62547e Refactor teams settings into its own controllers 2017-02-09 14:37:59 +01:00
Luka Murn 5cb3eb5e09 Refactor preferences -> move them to subcontroller, subroute 2017-02-09 11:07:16 +01:00
okriuchykhin c2a69982aa Merge pull request #471 from okriuchykhin/ok_SCI_936 
Adds datatable to all teams page [SCI-936]
 2017-02-07 10:33:33 +01:00
Oleksii Kriuchykhin 80dbc669d0 Simplify all teams dt definition [SCI-936] 2017-02-06 17:17:48 +01:00
Oleksii Kriuchykhin 449f4479e9 Fix code style issues [SCI-936] 2017-02-06 17:08:20 +01:00
Oleksii Kriuchykhin 916ed2572a Fix smart annotation is missing at editing column with smart annotation [SCI-997] 2017-02-03 16:42:38 +01:00
Oleksii Kriuchykhin 62535a01bd Move teams datatable js code into separate file [SCI-936] 2017-02-03 10:44:42 +01:00
Oleksii Kriuchykhin db90c5d63b Add datatable to all teams page [SCI-936] 2017-02-02 09:53:59 +01:00
Mojca Lorber d3e0eca44e redesign individual team page 2017-02-01 14:44:47 +01:00
Zmago Devetak 5c9954bb89 Merge pull request #450 from ZmagoD/zd_SCI_939 
Refactor "organizations" to "teams"
 2017-02-01 13:12:02 +01:00
zmagod be5faad97c fixes hound 2017-01-31 13:33:55 +01:00
okriuchykhin 9909f9dcff Merge pull request #456 from okriuchykhin/ok_SCI_951 
Fix missing preview images in task and protocol management [SCI-951]
 2017-01-27 14:42:41 +01:00
okriuchykhin 53e09bd50a Merge pull request #457 from okriuchykhin/ok_SCI_955 
Fix comments re-initialization after edit of the results [SCI-955]
 2017-01-27 11:50:52 +01:00
zmagod e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
Luka Murn 2c3be391a8 Merge pull request #462 from ZmagoD/zd_SCI_962_vol2 
fix edit action
 2017-01-26 17:25:57 +01:00
Luka Murn 36f25e98f1 Merge pull request #459 from okriuchykhin/ok_SCI_943 
Fix RTF toolbar init after eding new step [SCI-943]
 2017-01-26 17:25:41 +01:00
zmagod 30912c514e fix edit action 2017-01-26 17:24:24 +01:00
zmagod cec5f1333d fixes RTE bug for new text results [fixes SCI-962] 2017-01-26 16:54:43 +01:00
Oleksii Kriuchykhin 100cc700c6 Fix RTF toolbar init after eding new step [SCI-943] 2017-01-26 16:37:44 +01:00
Oleksii Kriuchykhin ff86184b24 Fix comments re-initialization after edit of the results [SCI-955] 2017-01-26 15:24:37 +01:00
Oleksii Kriuchykhin 0f860496a7 Fix image preview after saving of report [SCI-951] 2017-01-26 14:42:14 +01:00
Mojca Lorber 13d1cc5171 fix entering new smart anotations 2017-01-26 13:50:32 +01:00
zmagod afd8328e9c rename ortanizations -> teams 2017-01-25 14:22:06 +01:00
Oleksii Kriuchykhin ddd8bcf7b0 Prevent double initialization of popup [SCI-855] 2017-01-25 13:47:01 +01:00
Oleksii Kriuchykhin 96a9857dec Add handling of popups in the end of the table [SCI-855] 2017-01-25 13:47:01 +01:00
Oleksii Kriuchykhin fb49ce8be2 Improved tooltip handling in samples datatable [SCI-855] 2017-01-25 13:47:01 +01:00