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Author SHA1 Message Date
Oleksii Kriuchykhin
711dcfc7ac Update Omniauth, Azure and Okta strategies [SCI-7284] 2022-12-19 16:43:24 +01:00
aignatov-bio
d3fee7eee0
Merge pull request #4691 from okriuchykhin/ok_SCI_7551 
Add img2zpl gem for ZPL image code generation [SCI-7551]
 2022-12-09 14:28:15 +01:00
dependabot[bot]
0f001b9c5b
Bump nokogiri from 1.13.9 to 1.13.10 
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.13.9 to 1.13.10.
- [Release notes](https://github.com/sparklemotion/nokogiri/releases)
- [Changelog](https://github.com/sparklemotion/nokogiri/blob/main/CHANGELOG.md)
- [Commits](https://github.com/sparklemotion/nokogiri/compare/v1.13.9...v1.13.10)

---
updated-dependencies:
- dependency-name: nokogiri
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-12-08 04:01:51 +00:00
Martin Artnik
c828d02b99 Merge branch 'develop' into features/tiny_mce_6 2022-12-07 14:07:43 +01:00
Oleksii Kriuchykhin
95baaefd7a Add img2zpl gem for ZPL image code generation [SCI-7551] 2022-12-07 11:59:27 +01:00
dependabot[bot]
311f3d0baf
Bump nokogiri from 1.13.7 to 1.13.9 
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.13.7 to 1.13.9.
- [Release notes](https://github.com/sparklemotion/nokogiri/releases)
- [Changelog](https://github.com/sparklemotion/nokogiri/blob/main/CHANGELOG.md)
- [Commits](https://github.com/sparklemotion/nokogiri/compare/v1.13.7...v1.13.9)

---
updated-dependencies:
- dependency-name: nokogiri
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-10-21 03:54:44 +00:00
artoscinote
44b7c866b5
Move tinymce to webpacker and upgrade to v6 [SCI-7081] (#4385) 
* Move tinymce to webpacker and upgrade to v6 [SCI-7081]

* Cleanup and refactor [SCI-7081]

* Clean up legacy plugins [SCI-7150]

* Linter fix [SCI-7081]]
 2022-09-05 11:29:19 +02:00
Oleksii Kriuchykhin
f02f625e1e Add client for ZPL preview generation service [SCI-7049] 2022-08-12 12:57:19 +02:00
aignatov-bio
c5c6f73d32
Fix update sanitize gem version (#4247) 2022-07-14 12:36:02 +02:00
dependabot[bot]
6b72838bdf
Bump nokogiri from 1.13.5 to 1.13.6 
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.13.5 to 1.13.6.
- [Release notes](https://github.com/sparklemotion/nokogiri/releases)
- [Changelog](https://github.com/sparklemotion/nokogiri/blob/main/CHANGELOG.md)
- [Commits](https://github.com/sparklemotion/nokogiri/compare/v1.13.5...v1.13.6)

---
updated-dependencies:
- dependency-name: nokogiri
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-24 05:33:13 +00:00
dependabot[bot]
441ca1aa69
Bump nokogiri from 1.13.4 to 1.13.5 
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.13.4 to 1.13.5.
- [Release notes](https://github.com/sparklemotion/nokogiri/releases)
- [Changelog](https://github.com/sparklemotion/nokogiri/blob/main/CHANGELOG.md)
- [Commits](https://github.com/sparklemotion/nokogiri/compare/v1.13.4...v1.13.5)

---
updated-dependencies:
- dependency-name: nokogiri
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
 2022-05-19 03:41:14 +00:00
Oleksii Kriuchykhin
3943c8e413 Upgrade Ruby to 2.7.6 2022-04-29 13:49:28 +02:00
Oleksii Kriuchykhin
5aa986e8c7 Upgrade Rails to 6.1.5.1 2022-04-28 11:00:27 +02:00
dependabot[bot]
347a53efc7
Bump nokogiri from 1.13.3 to 1.13.4 (#4008) 
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.13.3 to 1.13.4.
- [Release notes](https://github.com/sparklemotion/nokogiri/releases)
- [Changelog](https://github.com/sparklemotion/nokogiri/blob/v1.13.4/CHANGELOG.md)
- [Commits](https://github.com/sparklemotion/nokogiri/compare/v1.13.3...v1.13.4)

---
updated-dependencies:
- dependency-name: nokogiri
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-04-12 13:45:56 +02:00
dependabot[bot]
595f2ec5f9
Bump nokogiri from 1.12.5 to 1.13.2 (#3900) 
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.12.5 to 1.13.2.
- [Release notes](https://github.com/sparklemotion/nokogiri/releases)
- [Changelog](https://github.com/sparklemotion/nokogiri/blob/main/CHANGELOG.md)
- [Commits](https://github.com/sparklemotion/nokogiri/compare/v1.12.5...v1.13.2)

---
updated-dependencies:
- dependency-name: nokogiri
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-03-08 10:33:24 +01:00
dependabot[bot]
db2ba235a8
Bump image_processing from 1.12.1 to 1.12.2 (#3909) 
Bumps [image_processing](https://github.com/janko/image_processing) from 1.12.1 to 1.12.2.
- [Release notes](https://github.com/janko/image_processing/releases)
- [Changelog](https://github.com/janko/image_processing/blob/master/CHANGELOG.md)
- [Commits](https://github.com/janko/image_processing/compare/v1.12.1...v1.12.2)

---
updated-dependencies:
- dependency-name: image_processing
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-03-08 10:32:50 +01:00
Martin Artnik
abac837cd4 Merge branch 'develop' of github.com:biosistemika/scinote-web into features/repository-filters 2022-01-20 13:26:08 +01:00
Oleksii Kriuchykhin
a456fb64f9 Lock psych version to < 4.0, until upgrade to rails 7 [SCI-6403] 2022-01-10 14:16:49 +01:00
Oleksii Kriuchykhin
7aeeb81fb7 Update Ruby to 2.7.5, optimize Rails configuration, update Puma and Wkhtmltopdf [SCI-6403] 2022-01-07 11:20:11 +01:00
Oleksii Kriuchykhin
738da6094f Add advanced filters to repository datatable service [SCI-6210] 2021-12-21 12:38:52 +01:00
Oleksii Kriuchykhin
47b8347ce6 Add support of Okta SSO provider [SCI-6184] 2021-11-02 16:19:56 +01:00
dependabot[bot]
87d271c7f4
Bump nokogiri from 1.11.4 to 1.12.5 
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.11.4 to 1.12.5.
- [Release notes](https://github.com/sparklemotion/nokogiri/releases)
- [Changelog](https://github.com/sparklemotion/nokogiri/blob/main/CHANGELOG.md)
- [Commits](https://github.com/sparklemotion/nokogiri/compare/v1.11.4...v1.12.5)

---
updated-dependencies:
- dependency-name: nokogiri
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
 2021-09-27 20:53:12 +00:00
Oleksii Kriuchykhin
7d31b99386 Revert to fontawesome CDN link in reports and update wicked_pdf [SCI-5650] 2021-06-18 15:03:17 +02:00
Oleksii Kriuchykhin
29c83ffbb1 Merge branch 'develop' into features/new-reports 2021-05-21 11:04:17 +02:00
dependabot[bot]
cbab3aee0e
Bump nokogiri from 1.11.1 to 1.11.4 
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.11.1 to 1.11.4.
- [Release notes](https://github.com/sparklemotion/nokogiri/releases)
- [Changelog](https://github.com/sparklemotion/nokogiri/blob/main/CHANGELOG.md)
- [Commits](https://github.com/sparklemotion/nokogiri/compare/v1.11.1...v1.11.4)

Signed-off-by: dependabot[bot] <support@github.com>
 2021-05-18 12:40:40 +00:00
Oleksii Kriuchykhin
df8354bde3 Move the docx creation to the Delayed job [SCI-5560] 2021-04-14 12:39:36 +02:00
Oleksii Kriuchykhin
a9ac8452f2 Add dynamic form elements in report wizard step 1 [SCI-5591] 2021-04-06 13:56:24 +02:00
Oleksii Kriuchykhin
f7c865974d Switch to graphviz gem [SCI-5596] 2021-03-25 17:42:57 +01:00
Oleksii Kriuchykhin
943c01cada Remove simple_token_authentication [SCI-5595] 2021-03-25 14:55:22 +01:00
Oleksii Kriuchykhin
75da67b937 Update Rails to 6.1.1, ruby to 2.7.2 [SCI-5459] 2021-01-28 14:43:45 +01:00
dependabot[bot]
9a6bfb9309
Bump nokogiri from 1.10.9 to 1.11.0 
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.10.9 to 1.11.0.
- [Release notes](https://github.com/sparklemotion/nokogiri/releases)
- [Changelog](https://github.com/sparklemotion/nokogiri/blob/master/CHANGELOG.md)
- [Commits](https://github.com/sparklemotion/nokogiri/compare/v1.10.9...v1.11.0)

Signed-off-by: dependabot[bot] <support@github.com>
 2021-01-08 07:16:23 +00:00
Urban Rotnik
aa1520bfb8 Merge branch 'develop' into jg_sci_2228 2020-10-22 14:21:39 +02:00
Alex Kriuchykhin
d5499168f3
Merge pull request #2896 from biosistemika/features/pwa 
Merge features/pwa to develop
 2020-10-13 16:34:57 +02:00
Urban Rotnik
2de1f901e6 Fix rubocop at hound supported version 2020-09-16 14:14:04 +02:00
Oleksii Kriuchykhin
7668e16419 Enable CORS for PWA [SCI-4979] 2020-09-04 11:47:45 +02:00
Urban Rotnik
a259800590 Merge branch 'develop' into jg_sci_2228 2020-08-31 16:29:23 +02:00
aignatov-bio
13f7653667 Merge branch 'develop' into features/2fa 2020-07-07 13:05:45 +02:00
aignatov-bio
4b9881e31e Add 2fa to user settings page 2020-07-01 13:25:06 +02:00
Urban Rotnik
88f54b16d7 Add 2fa fields to user 2020-06-24 17:58:58 +02:00
dependabot[bot]
b3912d5c69
Bump sanitize from 5.1.0 to 5.2.1 
Bumps [sanitize](https://github.com/rgrove/sanitize) from 5.1.0 to 5.2.1.
- [Release notes](https://github.com/rgrove/sanitize/releases)
- [Changelog](https://github.com/rgrove/sanitize/blob/master/HISTORY.md)
- [Commits](https://github.com/rgrove/sanitize/compare/v5.1.0...v5.2.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-06-16 22:11:34 +00:00
aignatov-bio
820514789d Update tinymce gem version 2020-05-17 17:36:26 +02:00
Oleksii Kriuchykhin
a518bfe023 Enable time fraction for task due date [SCI-4408] 2020-03-16 17:55:35 +01:00
Oleksii Kriuchykhin
73623da02c Merge branch 'develop' into features/dashboard 2020-02-28 16:46:56 +01:00
dependabot[bot]
cac9580d99
Bump nokogiri from 1.10.4 to 1.10.8 
Bumps [nokogiri](https://github.com/sparklemotion/nokogiri) from 1.10.4 to 1.10.8.
- [Release notes](https://github.com/sparklemotion/nokogiri/releases)
- [Changelog](https://github.com/sparklemotion/nokogiri/blob/master/CHANGELOG.md)
- [Commits](https://github.com/sparklemotion/nokogiri/compare/v1.10.4...v1.10.8)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-02-25 04:38:49 +00:00
aignatov-bio
01868fff23 Add calendar front-end 2020-02-19 15:57:06 +01:00
Oleksii Kriuchykhin
522ae12f08 Merge branch 'develop' into ok_SCI_3988 2020-01-07 17:07:22 +01:00
Oleksii Kriuchykhin
d9b9243da7 Merge branch 'develop' into features/new-column-types 2020-01-07 16:03:33 +01:00
Oleksii Kriuchykhin
1b902ff4b3 Merge branch 'develop' into ok_SCI_3988 2020-01-07 15:26:30 +01:00
Urban Rotnik
400c109592 Refactor StatusesJS for new dropdown 2019-12-23 14:34:11 +01:00
Alex Kriuchykhin
792e6f2eb9
Merge pull request #2263 from okriuchykhin/ok_SCI_4142 
Implement SSO with Azure AD [SCI-4142]
 2019-12-12 16:12:40 +01:00
Oleksii Kriuchykhin
ff4ef818fb Implement SSO with Azure AD [SCI-4142] 2019-12-10 17:24:53 +01:00
aignatov-bio
6c057a86c9 Update git version 2019-12-03 13:31:13 +01:00
Urban Rotnik
0dc1daa7c6 Add gem Down, File size validation before and during download 2019-11-18 14:28:19 +01:00
Oleksii Kriuchykhin
b2862b6c9e Remove Paperclip DB columns and fix experiment templates [SCI-3988] 2019-11-18 14:16:28 +01:00
dependabot[bot]
03f5b87b8e
Bump bootstrap-sass from 3.3.7 to 3.4.1 
Bumps [bootstrap-sass](https://github.com/twbs/bootstrap-sass) from 3.3.7 to 3.4.1.
- [Release notes](https://github.com/twbs/bootstrap-sass/releases)
- [Changelog](https://github.com/twbs/bootstrap-sass/blob/master/CHANGELOG.md)
- [Commits](https://github.com/twbs/bootstrap-sass/compare/v3.3.7...v3.4.1)

Signed-off-by: dependabot[bot] <support@github.com>
 2019-10-29 09:34:37 +00:00
Oleksii Kriuchykhin
53402c9ce1 Fix images in reports, impove speed of report generation [SCI-3990][SCI-3993] 2019-10-17 13:30:14 +02:00
Oleksii Kriuchykhin
ab395f46d0 Add paperclip for backward compatibility [SCI-3949] 2019-10-09 10:28:02 +02:00
Oleksii Kriuchykhin
260fcd6e89 Remove Paperclip from codebase [SCI-3908] 2019-10-02 19:45:14 +02:00
Urban Rotnik
e5933091d9 Add rubocop-rails gem 2019-09-17 13:42:43 +02:00
Oleksii Kriuchykhin
bc38c6b29e Fix failing test [SCI-3745] 2019-09-16 10:26:13 +02:00
Oleksii Kriuchykhin
c068901b00 Upgrade Rails to 6.0 [SCI-3745] 2019-09-12 17:24:08 +02:00
Oleksii Kriuchykhin
3a87296c7b Fix cucumber tests, switch to chromium-driver [SCI-3786] 2019-08-22 13:38:02 +02:00
Oleksii Kriuchykhin
973efa55e1 Merge branch 'master' into ok_SCI_3678 2019-08-08 11:17:07 +02:00
Jure Grabnar
d9f6c249f9 Fix CVE-2015-9284 omniauth security precautions 
Close SCI-3588
 2019-07-31 16:59:38 +02:00
Jure Grabnar
6546bd1532 Add omniauth-rails_csrf_protection gem 
Close SCI-3588
 2019-07-31 16:05:06 +02:00
Anton Ignatov
f35f4886a3 Fix markup 2019-07-29 10:18:34 +02:00
Anton Ignatov
a4b2825258 Fix tests for active storage 2019-07-26 15:58:51 +02:00
Luka Murn
a568d39f4c Remove commit_param_routing Gem 
This Gem was only used for certain sample controller actions.
 2019-07-26 10:18:31 +02:00
aignatov-bio
2fae7d8208
Fix issue in report (#1941) 2019-07-19 10:37:44 +02:00
Oleksii Kriuchykhin
a1941a21dc Futher refactoring of old Paperclip methods [SCI-3539] 2019-07-09 10:28:15 +02:00
Oleksii Kriuchykhin
028e647f4d Upgrade to Rails 5.2.3 [SCI-3651] 2019-07-03 11:15:13 +02:00
Jure Grabnar
4bdefda2af Upgrade webpacker to ~> 4.0.0 2019-07-02 13:30:13 +02:00
aignatov-bio
2793777463
Features/docx report (#1873) 
* Initial setup for docx report

* Add render for project, experiment, my_module

* Implement converter for RTE fields

* Add all report elements

* fix markup

* Change headers, remove empty blocks, refactored repository draw

* Add smart annotations support

* Fix justify fields

* Prepare for addons integration

* Fix markup

* Add comments to GemFile

* Fix TinyMCE error

* Change UI for new report download selector

* Fix file error in inventory cell for docx

* Fix i18n object for header
 2019-07-01 10:14:16 +02:00
Oleksii Kriuchykhin
ba2daede0b Add migration scripts [SCI-3539] 2019-06-24 15:17:42 +02:00
Oleksii Kriuchykhin
109793c7fb Upgrade to Rails 5.2.3 and add ActiveStorage [SCI-3539] 2019-06-13 12:10:44 +02:00
Jure Grabnar
bbfe2b9c89
Merge pull request #1798 from biosistemika/jg_sci_3145_thumbnail_preview 
File preview on new attachments layout [SCI-3145]
 2019-06-10 17:59:12 +02:00
Urban Rotnik
17f987e7c8 Add rubocop-perfromance after Rubocop has been updated 2019-06-10 12:24:04 +02:00
Oleksii Kriuchykhin
e543a849d4 Add document file preview generation with LibreOffice [SCI-3145] 2019-06-05 14:52:30 +02:00
Anton Ignatov
995408e7fc Fix protocol update error, rollback bootstrap gems and fix step name 2019-05-08 17:18:19 +02:00
Anton Ignatov
d36160386f Merge branch 'master' into master-with-note-section 2019-05-07 13:26:55 +02:00
Oleksii Kriuchykhin
4522e6bf06 Update Ruby to 2.5.5, Rails to 5.1.7 and Devise to 4.6.2 [SCI-3401] 2019-04-30 17:04:48 +02:00
Anton Ignatov
aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
Oleksii Kriuchykhin
572f28f0b8 Remove unused devise_security_extension dependency [SCI-3347] 2019-04-16 13:08:15 +02:00
aignatov-bio
8d7cc57da1
Add zoom to image annotation and check jpeg file quality before save [SCI-3300] (#1654) 
* Add zoom to image annotation and check jpeg file quality before save
* Move compression to front end
* Move quality extractor to paperclip processor
 2019-04-15 09:49:44 +02:00
aignatov-bio
9fff93ab0e
Merge pull request #1576 from biosistemika/image-editor-prototype 
Feature/Image annotation
 2019-03-22 16:31:00 +01:00
Oleksii Kriuchykhin
a822227383 Add rich text editor to task and protocol description [SCI-3062][SCI-3071] 2019-03-14 16:27:33 +01:00
Oleksii Kriuchykhin
0b0141de5f Update Rails to 5.1.6.2 2019-03-13 20:32:29 +01:00
Anton Ignatov
b6480b04a9 Fixed conflicts 2019-03-11 15:36:56 +01:00
Oleksii Kriuchykhin
9bbdc8fc89 Include tui image editor with webpack [SCI-2856] 2019-03-11 15:12:38 +01:00
Urban Rotnik
d3d9868ba4 Set version for HTTParty dependency, add opts in mailer 2019-02-19 11:23:01 +01:00
Urban Rotnik
5b55860dea Add scheduler 2019-02-13 15:48:15 +01:00
Urban Rotnik
9f3187abdf Add service for sync system notifications 2019-02-13 15:48:15 +01:00
aignatov-bio
5c85595ab4
System Notifications - View All Page [SCI-2956 and SCI-3001] (#1482) 
* System notification view and notification partial (SCI 2956 and SCI 3001)
 2019-02-13 13:06:14 +01:00
Urban Rotnik
457e9990c5 Add overcommit gem for git hooks (rubocop) 2019-01-18 16:56:28 +01:00
Urban Rotnik
6cf4717ab3 Add envirnoments to run app without docker, reorder Gemfile 
- Reorder Gemfile into alphabet order (rule by Rubocop)
- Add extra ENV variable for custom DB settings locally
- Add extra ENV for disable spoof check on Paperclip
 2019-01-18 16:01:09 +01:00
Oleksii Kriuchykhin
1d4fc7172d Update Ruby to 2.4.5 and add jemalloc package 2019-01-15 17:10:10 +01:00
Luka Murn
e9c0b34662 Merge branch 'core-api' into 'master' 
Conflicts:
	Gemfile
	app/services/api.rb
	config/initializers/api.rb
	config/initializers/extends.rb
	config/routes.rb
	db/schema.rb
	spec/controllers/api/api_controller_spec.rb
 2018-11-14 16:59:04 +01:00
Luka Murn
84df2c81f9 Merge branch 'features/export-all' 
Conflicts:
	app/controllers/experiments_controller.rb
	app/controllers/my_modules_controller.rb
	db/schema.rb
 2018-11-13 09:14:02 +01:00
Oleksii Kriuchykhin
0e192cc830 Ensure that temporary report is always deleted [SCI-2834] 2018-11-06 09:33:18 +01:00
Alex Kriuchykhin
e9b64b65a3
Merge pull request #1330 from okriuchykhin/ok_SCI_2770 
Add request rate throttling for API [SCI-2770]
 2018-10-19 09:38:31 +02:00