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12574 commits 31 branches 181 tags 166 MiB
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360 commits

Author SHA1 Message Date
aignatov-bio
3db6129808
Fix report saving (#1748) 2019-05-13 08:58:47 +02:00
aignatov-bio
1a860037f7
Update reports for new RTE [SCI-3263] (#1691) 
* Update reports for new RTE
 2019-04-25 16:16:43 +02:00
Urban Rotnik
11a7a975af Merge branch 'features/scinote-improvements' into master-with-note-section 2019-04-23 14:50:03 +02:00
Anton Ignatov
aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
Jure Grabnar
1295c0583a Archived results are now separated in exported project 
Closes SCI-3179
 2019-04-17 16:37:21 +02:00
Urban Rotnik
26cf8271a1 Change step header, remove vertical line 2019-04-05 10:57:38 +02:00
Jure Grabnar
26848ecaef Refactor step position + 1 into a method 2019-04-03 13:07:30 +02:00
Oleksii Kriuchykhin
98e58ff7eb Add global activities to reports [SCI-3255] 2019-04-01 11:26:51 +02:00
Miha Mencin
1b19e67c07 Revert "Step header changes, removed vertical line" 
This reverts commit b0f0ded87d.
 2019-03-27 10:21:40 +01:00
Urban Rotnik
b0f0ded87d Step header changes, removed vertical line 
SCI-3134
 2019-03-25 17:25:13 +01:00
Anton Ignatov
4ec0a3c871 Update TinyMCE image loader for new fields 2019-03-22 10:52:26 +01:00
Anton Ignatov
07c2819163 refactoring tinymce image uploading 2019-03-20 14:46:54 +01:00
Urban Rotnik
686f10cbd0 Refactor instance method 'ordered_modules' to scope 2019-01-18 16:56:33 +01:00
Urban Rotnik
1b70f42817 Refactor 'Experiment.modules_without_group' to Module's scope 2019-01-18 16:54:00 +01:00
Oleksii Kriuchykhin
ec28db6f4f Fix image URLs in export all document [SCI-2931] 2019-01-10 14:19:40 +01:00
Luka Murn
65adc7a556 Fix 2 minor visual bugs in reports 2018-12-12 11:15:32 +01:00
Alex Kriuchykhin
20e2cbf0ca
Merge pull request #1391 from okriuchykhin/ok_SCI_2880 
Fix smart annotations rendering issues [SCI-2880]
 2018-11-28 09:47:20 +01:00
Oleksii Kriuchykhin
2e00f1546a Fix handsontable initialization [SCI-2882] 2018-11-26 14:11:46 +01:00
Oleksii Kriuchykhin
b926cadba4 Fix smartannotations rendering issues [SCI-2880] 2018-11-23 15:07:08 +01:00
Matej Zrimšek
57dbd63aa3 Add archive badge for archived projetcs/experiments/modules in export-all PDF [SCI-2817] 2018-11-12 01:34:00 +01:00
Matej Zrimšek
48a6a64502 Move PDF generation and export logic of export all PDF to the model 2018-10-14 22:52:54 +02:00
Matej Zrimšek
69f3a919db Some specification and syntax fixes [SCI-2641] 2018-10-12 07:42:17 +02:00
Matej Zrimšek
d970576d60 Switch between generating report PDF and export all PDF [SCI-2641] 2018-10-12 07:40:21 +02:00
Matej Zrimšek
c0dc4f6951 Add hyperlinks to inventories' *.csv files in export all PDF [SCI-2641] 2018-10-12 07:40:21 +02:00
Matej Zrimšek
7152d2f0f1 Fix/update file naming convection for exported files [SCI-2641] 2018-10-12 07:40:21 +02:00
Matej Zrimšek
6f77c4772c Minor fix for assets & tables naming in export all PDF 2018-10-12 07:40:21 +02:00
Matej Zrimšek
0ebce8e283 Add relative links (not working) to files and tables into the PDF [SCI-2641] 2018-10-12 07:40:21 +02:00
Alex Kriuchykhin
75a48291e1
Merge pull request #1272 from okriuchykhin/ok_SCI_2654 
Fix report elements sorting [SCI-2654]
 2018-08-22 14:20:54 +02:00
Oleksii Kriuchykhin
62d99a4372 Fix report elements sorting [SCI-2654] 2018-08-20 14:46:23 +02:00
Zanz2
dfcaa40f1a
Merge branch 'master' into zz_refactor_icons_sci_2445_v2 2018-08-14 13:33:43 +02:00
Zanz2
45a4c1c598 changed the icons as per last comment in jira issue 2018-08-14 13:26:48 +02:00
Oleksii Kriuchykhin
b2bd1cb849 Upgrade to Turbolinks 5 [SCI-2253] 2018-07-27 17:26:46 +02:00
Oleksii Kriuchykhin
6669beaf0e Change icons throughout the rest of application [SCI-2445] 2018-07-27 15:27:08 +02:00
Oleksii Kriuchykhin
13c374d9b3 Add hooks to new report modal [SCI-2377] 2018-06-14 15:26:06 +02:00
Luka Murn
9a4fdd166e Merge branch 'lm-sci-2431-fix' of https://github.com/Ducz0r/scinote-web into Ducz0r-lm-sci-2431-fix 
Conflicts:
	app/views/projects/index.html.erb
 2018-06-12 17:44:42 +02:00
zmagod
51e024e3d7 adds data-hooks to reports and search results [fixes SCI-2374] 2018-06-07 14:29:40 +02:00
Luka Murn
e0a3b5a941 Fix Save PDF to repository modal window 2018-06-06 16:29:07 +02:00
Luka Murn
c76b926387
Delete _report_sidebar.html.erb 
This file is no longer needed from my research.
 2018-05-25 11:04:05 +02:00
Zmago Devetak
280a926554
Merge pull request #1159 from ZmagoD/zd_SCI_2372 
adds data-hook in save_PDF_to_inventory modal [fixes SCI-2372]
 2018-05-24 16:05:56 +02:00
zmagod
06f1daf7a9 rename data-hook 2018-05-24 16:02:56 +02:00
mlorb
c4ecfc4d38 Change icons throughout sciNote - navigation, project, task cards 2018-05-22 16:55:58 +02:00
zmagod
e97a98f189 adds data-hook in save_PDF_to_inventory modal [fixes SCI-2372] 2018-05-22 14:18:40 +02:00
zmagod
e019767e90 refactor save_pdf_to_inventory_item service 2018-05-17 13:17:19 +02:00
zmagod
b125863baf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2371 2018-05-17 11:25:33 +02:00
zmagod
ca0c8cbb71 fixes typos, fixes pdf rendering 2018-05-17 11:21:34 +02:00
zmagod
4573655ec8 adds save PDF report to inventory feature [fixes SCI-2371] 2018-05-16 09:31:19 +02:00
mlorb
ed27a7a62a some extra restyling/unifying off app 2018-05-11 18:02:17 +02:00
mlorb
7df40e56c7 UI/UX restyle - fixes throughout application part one 2018-05-08 16:33:42 +02:00
mlorb
d2c0ae241e
Merge pull request #1121 from mlorb/ml-sci-2244 
Update buttons positions and wording throughout app [SCI-2244]
 2018-05-03 11:05:15 +02:00
zmagod
e9642cadad Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2304 2018-04-26 14:26:30 +02:00
mlorb
88d5ba369d
Merge branch 'ux-release-1' into ml-sci-2244 2018-04-26 14:07:03 +02:00
Luka Murn
cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
mlorb
9e11f3b220 update buttons positions and wording throughout app 2018-04-25 13:57:12 +02:00
zmagod
503ad1ba20 removes samples from views [fixes SCI-2304] 2018-04-24 08:26:55 +02:00
zmagod
199a2a23bf fixes per @mlorb 's request 2018-04-23 12:26:21 +02:00
zmagod
e96b690a5b removes reports link from secondary navigation, fix bug with turbolinks 2018-04-20 11:57:52 +02:00
zmagod
dafa29d4bf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2124 2018-04-20 10:33:15 +02:00
zmagod
9d282d1800 adds new reports index page [fixes SCI-2124] 2018-04-18 16:47:52 +02:00
mlorb
cc34376253 update reports show page to work with new navigation 2018-04-18 14:40:53 +02:00
Zmago Devetak
e30b2261a8
Merge pull request #1077 from ZmagoD/zd_SCI_2279 
fixes tiny_mce pdf report in filesystem storage mode [fixes SCI-2279]
 2018-04-05 16:52:16 +02:00
zmagod
218f421dff fixes smart annotation avatar bug in pdf reports[fixes SCI-2282] 2018-04-05 15:31:25 +02:00
zmagod
c0cc6c293a fixes tiny_mce pdf report in filesystem storage mode [fixes SCI-2279] 2018-04-05 13:15:32 +02:00
Oleksii Kriuchykhin
f656ad1561 Fix fa icons [SCI-2217] 2018-03-30 17:03:44 +02:00
Oleksii Kriuchykhin
cc5d8550b1 Refactor file preview modal [SCI-2217] 2018-03-30 11:50:28 +02:00
mlorb
bc06542ed7 refactor project navigation 2018-03-22 11:41:33 +01:00
Matej Zrimšek
5bda53eebf Overall refactoring of all canaid permissions and code related to their calls. 2018-02-16 10:54:06 +01:00
Matej Zrimšek
e36ec69ca9 Project level permissions refactoring (mostly names). 2018-02-14 13:16:32 +01:00
Matej Zrimšek
13e9a2a132 Corrected some project level permissions; minor refactoring. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
d423700e84 Used permissions where they were missing. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
321ddc2916 Grouped existing project permissions and used 'canaid' gem. 2018-02-14 13:09:45 +01:00
zmagod
ad742ac2d1 adds nil check in ste_table_element for table name [fixes SCI-2009] 2018-02-05 16:27:04 +01:00
zmagod
f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
mlorb
a0b2d3f5ef refactor read_team permission 2017-12-14 14:18:14 +01:00
zmagod
066c782cd2 Merge branch 'master' of https://github.com/biosistemika/scinote-web into disable_tiny_mce_asset_unless_step 2017-11-24 16:29:32 +01:00
zmagod
3dc3ed906f fixes bug with embedded images [fixes SCI.1624] 2017-10-02 18:06:42 +02:00
Oleksii Kriuchykhin
6824f9a8bc Improve memory utulization in PDF report generator [SCI-1482] 2017-10-02 11:29:22 +02:00
zmagod
7b9410f02f fixes smart annotations bug in reports [fixes SCI-1328] 2017-06-27 11:26:32 +02:00
zmagod
2b2f513366 fixes export pdf error on production 2017-06-22 16:40:50 +02:00
Matej Zrimšek
d49524a26f Set correct repository icon on reports and done some needed refactoring with this. [SCI-1378] 2017-06-20 16:10:50 +02:00
Luka Murn
02dd6636ba Allow saving & editing of reports with repository elements 
Closes SCI-1279.
 2017-06-07 16:55:00 +02:00
Luka Murn
b5f6d1da94 Allow custom repositories to be added to reports 2017-06-07 16:54:32 +02:00
mz3944
6b8c8deb16 Merge pull request #634 from mz3944/mz-SCI-414 
Uncompleted steps not added to Reports
 2017-05-23 09:58:05 +02:00
Matej Zrimšek
20265ddd69 Readded result content modal for report creation and updated checkbox hierarchy logic accordingly. [fixes SCI-487] 2017-05-17 18:18:57 +02:00
Matej Zrimšek
f78c80b148 Added possibility to add uncompleted steps to report. [closes SCI-414] 2017-05-17 13:25:21 +02:00
Matej Zrimšek
2c6f888cbc Replace present? with more efficient exitst? for report content adding modal. [fixes SCI-487] 2017-05-15 18:56:41 +02:00
Matej Zrimšek
901558c733 Made checkbox logic sitewide available and applied it to other content adding modals in report aswell. [fixes SCI-487] 2017-05-15 18:20:42 +02:00
Matej Zrimšek
ba693c65a8 Fixed adding contents to report logic and removed unneeded code. [fixes SCI-487] 2017-05-15 18:20:42 +02:00
Matej Zrimšek
dbb79ebab1 Refactoring of specific modals for adding content to report and fixing their inconsistencies. [fixes SCI-487] 2017-05-15 17:43:12 +02:00
Matej Zrimšek
b97cb91840 Refactoring of modal for adding content to report. [fixes SCI-487] 2017-05-15 17:43:12 +02:00
Matej Zrimšek
27cfd55ea5 Simplified popup modal for adding contents to report. [fixes SCI-487] 2017-05-15 17:43:12 +02:00
Zmago Devetak
4b816f5322 Merge pull request #568 from ZmagoD/zd_SCI_1119 
Add images to fields with rich text formatting
 2017-05-08 13:06:58 +02:00
zmagod
b22350136f adds label to step in report [fixes SCI-488] 2017-05-05 09:45:18 +02:00
Matej Zrimšek
a5cffd06f3 Removed all tutorial data from ERB, so that all tutorial code is in JS. [needed for fixing SCI-719] 2017-04-25 16:03:50 +02:00
zmagod
86c6ae3b03 display tinyMCE images in reports 2017-04-25 09:53:35 +02:00
zmagod
c25df63a14 add tinymce img importer and refactor input sanitize helper 2017-04-19 09:11:52 +02:00
zmagod
4635a3320d Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1003_add_extends 2017-03-24 16:09:28 +01:00
zmagod
c244e69e81 fixed report comments bug [fixes SCI-1100] 2017-03-17 16:59:40 +01:00
zmagod
5d372851d3 fixes reports comment bug [fixes SCI-1100] 2017-03-14 16:24:02 +01:00
zmagod
5c2e9a4b04 adds extends and fixes report methods 2017-03-08 14:14:03 +01:00
Mojca Lorber
f84611f558 fix report - checklist items are in separate row than checkboxes 2017-02-22 15:51:26 +01:00
Oleksii Kriuchykhin
cf8566df33 Add task complete/uncomplete functionality [SCI-999] 2017-02-10 14:27:20 +01:00
zmagod
e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
Luka Murn
0baaf12de3 Re-display images & checkboxes in PDF reports 
Closes SCI-953.
 2017-01-26 10:46:58 +01:00
Oleksii Kriuchykhin
c55f3cb99c Add flag to disable simple_format in custom_auto_link [SCI-940] 2017-01-25 17:18:19 +01:00
Oleksii Kriuchykhin
310d8c1920 Refactor smart annotation/auto_link/simple_format rendering [SCI-940] 2017-01-25 17:18:19 +01:00
zmagod
72e13beee3 renamed organizations in views 2017-01-25 12:01:23 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
Mojca Lorber
8e02c2e025 add locale - fix 2017-01-20 13:37:07 +01:00
Mojca Lorber
4ea154410a add to fields with rich text formatting 2017-01-19 15:27:24 +01:00
Mojca Lorber
44de927cf4 display smart annotations in reports - without rich text fields 2017-01-19 14:22:54 +01:00
Mojca Lorber
3b92ab9f36 add names to tables from protocol steps in reports 2017-01-18 14:22:19 +01:00
Oleksii Kriuchykhin
75031e17b9 Remove double sanitization from views [SCI-102] 2017-01-12 16:54:15 +01:00
Oleksii Kriuchykhin
0350f2f792 Add html escaping to name filelds in the views [SCI-102] 2017-01-12 11:03:14 +01:00
Oleksii Kriuchykhin
d05c16b0ba Added auto_link wrapper with custom sanitization [SCI-102] 2017-01-11 17:02:17 +01:00
Oleksii Kriuchykhin
0546716a0b Improve user input sanitization, fix bugs [SCI-102] 2017-01-11 15:50:11 +01:00
Oleksii Kriuchykhin
cd3924afd3 Sanitize .html_safe marked strings which contain tags [SCI-102] 2017-01-05 13:04:19 +01:00
Oleksii Kriuchykhin
9c4191a1e0 Initial code commit [SCI-102] 2017-01-05 13:04:19 +01:00
Luka Murn
a48eaf662e Restyle step table display in reports so 
Closes SCI-546.
 2016-12-19 15:09:49 +01:00
zmagod
fafecce264 adds autolink to comments, tast desc., step desc., experiment desc., samples table 'only custom fields', checklists [fixes SCI-643] 2016-11-23 14:18:50 +01:00
Luka Murn
26d04b1f3c Merge branch 'rich-text-formatting' into 'master' 
Conflicts:
	Gemfile.lock
	app/assets/stylesheets/themes/scinote.scss
 2016-11-17 16:39:33 +01:00
Matej Zrimšek
c8eb82cc85 Fixed tutorial step numbers and changed getting next page reference on protocols page. 2016-11-17 14:46:04 +01:00
Matej Zrimšek
c64146904a Refactored and added back button for tutorial for steps 19-20. Updated tutorial steps count. 2016-11-17 14:46:04 +01:00
Luka Murn
d1701bd7ae Merge pull request #276 from Ducz0r/lm-sci-637 
Automatically resize textarea elements [SCI-637]
 2016-11-17 09:58:36 +01:00
Luka Murn
a3bbf94643 Add a smart_text_area tag & implement it throughout application 
This fixes the mentioned issues @mlorb mentioned.
Closes SCI-637.
 2016-11-16 17:57:01 +01:00
Oleksii Kriuchykhin
d2e29935cf Improved tutorial styling [SCI-685] 2016-11-16 15:44:06 +01:00
zmagod
b781db9667 fixed bullets 2016-11-16 15:30:14 +01:00
mlorb
1ca452db7b Merge pull request #273 from mlorb/ml_sci_640 
Add rich text formatting on results and remove markdown [SCI-640]
 2016-11-11 12:06:13 +01:00
Oleksii Kriuchykhin
b9f982ead7 Additional steps added to tutorial and numbering of the steps fixed [SCI-571] 2016-11-11 10:07:34 +01:00
Mojca Lorber
fbaffbcaab add formatted text in reports 2016-11-10 15:20:40 +01:00
Mojca Lorber
3e162b3a93 remove redcarpet gem - markdown 2016-11-10 14:11:32 +01:00
Oleksii Kriuchykhin
0ec7c019b3 Fix issue with pop-up windows and turbolinks [SCI-463] 2016-10-17 14:25:54 +02:00
Matej Zrimšek
ece89da391 Removed ruby constants duplicates in JS, because of caching problems. 2016-10-17 11:57:47 +02:00
Matej Zrimšek
0780bd2416 Ruby constants are now automatically available in JS. Refactoring was needed. 2016-10-17 11:57:37 +02:00
Matej Zrimšek
a3dfb59558 Added remaining constants. 2016-10-17 11:30:05 +02:00
Jure Grabnar
6519e8dbb1 Add e-notation preprocessing to formulas 
SCI-350 #close
 2016-09-13 09:46:22 +02:00
Jure Grabnar
fa3515d2eb Add formulas to reports 2016-09-13 09:46:21 +02:00
Zmago Devetak
375a72db18 Merge pull request #114 from ZmagoD/zd_SCI_294_vol2 
fixes reports file name [fixes SCI-294]
 2016-08-30 14:59:07 +02:00
zmagod
f356acb882 fixes reports file name [fixes SCI-294] 2016-08-30 11:36:39 +02:00
zmagod
5518d1cd1e fixed 16 step of tutorial 2016-08-30 08:52:44 +02:00
zmagod
eab05eb9db adds font-awesome to pdf [fixes SCI-345] 2016-08-22 14:40:09 +02:00
zmagod
ca0ba1403d set flask icon to experiment [fixes SCI-330] 2016-08-17 14:17:29 +02:00
zmagod
7abc8f3a90 Merge branch 'master' into experiment-level 2016-08-17 09:28:35 +02:00
Jure Grabnar
9f7df0af76 Fix checkbox in experiment reports 2016-08-09 13:13:50 +02:00
Jure Grabnar
208e85e7e0 Remove archived experiments from reports 2016-08-09 11:17:25 +02:00
Jure Grabnar
8b2b134614 Migrate old reports to new experiment level reports 2016-08-04 13:19:46 +02:00
Jure Grabnar
9092dd6914 Replace all occurences of module_elements 2016-08-03 12:52:52 +02:00
Jure Grabnar
ff081cd844 Simplify project contents dialog 2016-08-03 12:52:51 +02:00
Jure Grabnar
dc82830a8f Add checkbox behaviour to experiment contents 2016-08-03 12:52:51 +02:00
Jure Grabnar
3f33ebe59a Fix wrong closure in experiment contents 2016-08-03 12:52:51 +02:00
Jure Grabnar
acc41dae40 Add experiment content report dialog 
Adding still has to be implemented
 2016-08-03 12:52:51 +02:00
Jure Grabnar
41e8c54aa5 Rename _module_element_controls to element_controls 2016-08-03 12:52:06 +02:00
Jure Grabnar
d82ba163ed Add experiment to report screen 
Only placeholder for now, JS still needs fixing.
 2016-08-03 12:52:06 +02:00
Jure Grabnar
ac708e7497 Remove no module group from reports 2016-08-03 12:52:06 +02:00
Jure Grabnar
797685fbf0 Remove workflows from project content dialog (report) 2016-08-03 12:52:06 +02:00
Jure Grabnar
daca739262 Add new line to selector for readability 2016-08-03 12:52:06 +02:00
Jure Grabnar
598c5a63fd Add experiment level to project report contents modal 2016-08-03 12:52:05 +02:00
Mojca Lorber
ffa64445df fixes issue SCI-223 2016-08-02 16:30:07 +02:00
zmagod
6e3ce92348 add checking for step content 2016-08-01 11:23:22 +02:00
Luka Murn
076b67620f Migration GitLab -> GitHub 2016-07-21 13:11:15 +02:00
Luka Murn
055298fee8 Initial commit. 2016-02-12 16:52:43 +01:00