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306 commits

Author SHA1 Message Date
mlorb
5bc8eb7392
Merge pull request #1921 from mlorb/ml-sci-3641 
Fix page redirect and add success flash msg after protocols.io import [SCI-3641]
 2019-07-12 15:52:40 +02:00
Anton Ignatov
ffd415d409 Inital refactor for Assets model 2019-07-12 15:02:06 +02:00
Anton Ignatov
57a273d5d0 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 11:34:41 +02:00
aignatov-bio
c6152ccddb
Fix big table issue in ProtocolIo preview (#1927) 2019-07-12 11:17:51 +02:00
Mojca Lorber
f8afc92606 Fix page redirect and add success flash msg after protocols.io import action 2019-07-11 09:50:39 +02:00
Jure Grabnar
5eb197127f Fix relative links in protocolsio iframe 
Closes SCI-3660
 2019-07-10 19:20:40 +02:00
aignatov-bio
7ac410e573
Fix visual bugs across ProtocolIo [SCI-3671] (#1914) 
* Fix visual bugs across ProtocolIo
 2019-07-10 13:00:32 +02:00
mlorb
23270393b0
Merge branch 'master' into ml-sci-3634 2019-07-09 14:38:00 +02:00
Mojca Lorber
7bb82e2fc2 Fix eternal protocols tab visuals 2019-07-09 14:35:40 +02:00
Jure Grabnar
ae7da78bff
Merge pull request #1897 from jbargu/jg_sci_3646 
[SCI-3646] Add paging functionality to external protocols
 2019-07-08 13:06:19 +02:00
aignatov-bio
99b1075c28
Fix protcol naming when load multiple protocols (#1904) 2019-07-08 12:51:47 +02:00
Jure Grabnar
0eb09407bc Always scroll to top when searching for new string 2019-07-04 15:38:15 +02:00
Jure Grabnar
dc7fee51fa Add Show more protocols functionality to external protocols 
Closes SCI-3646
 2019-07-04 15:35:18 +02:00
Jure Grabnar
20134c9f8a
Features/protocolsio integration (#1893) 
Features/protocolsio integration
 2019-07-03 17:32:20 +02:00
aignatov-bio
d2849c88fd
Remove draft after save step (#1878) 2019-07-03 09:18:52 +02:00
aignatov-bio
378e91b426
Fix links on search page (#1867) 2019-07-02 11:21:00 +02:00
Oleksii Kriuchykhin
4ea6b56582 Fix Step and Result file previews [SCI-3539] 2019-07-01 23:30:20 +02:00
aignatov-bio
a08d93376c
Add promo modal when MarvinJS disabled (#1872) 2019-07-01 11:51:13 +02:00
Oleksii Kriuchykhin
2f39b7f22b Fix TinyMCE editor initialization for step editing [SCI-3511] 2019-06-28 12:06:04 +02:00
Jure Grabnar
5430fb311d Hound fixes 2019-06-28 10:41:20 +02:00
Jure Grabnar
1a9fca87d2 Fix non-existent protocol-card in preview banner 2019-06-28 08:49:12 +02:00
Jure Grabnar
149f45f4fc Hound fixes 2019-06-28 02:31:25 +02:00
Jure Grabnar
7fb696cf48 Fix unclickable import modal 2019-06-28 02:00:05 +02:00
Jure Grabnar
03b81400a9 Add timeout to search 2019-06-28 01:50:52 +02:00
Jure Grabnar
1ccabf62b3 Add preview banner in external protocols 2019-06-28 01:38:33 +02:00
Jure Grabnar
d3afcbed50 Style card view on external protocols 
Closes SCI-3535
 2019-06-28 00:43:05 +02:00
Jure Grabnar
7fb650a125 Change click -> onchange event for sort_by buttons 2019-06-27 22:56:38 +02:00
Jure Grabnar
0a77cedaf8 Fix sorting of external protocols and start showing results 2019-06-27 22:48:56 +02:00
Jure Grabnar
7d71608166 Add spinner to external preview 2019-06-26 19:43:35 +02:00
Anton Ignatov
7e5c39d3e4 Merge branch 'master' into features/marvinjs-integration 2019-06-21 14:51:45 +02:00
Alex Kriuchykhin
db7c6435b3
Merge pull request #1851 from okriuchykhin/ok_SCI_3436 
Implement saving of attachments ordering on steps [SCI-3436]
 2019-06-20 11:31:15 +02:00
Jure Grabnar
b2b752fcf8 Fix hound complaints 2019-06-19 23:37:04 +02:00
Jure Grabnar
b3c3b68dc2 Add external preview to External Protocols tab 
Closes SCI-3563
 2019-06-19 22:54:20 +02:00
aignatov-bio
609c408c77 Fix error on new step saving command (#1845) 2019-06-19 14:06:25 +02:00
aignatov-bio
5734d0cdd7 Fix TinyMCE field selector for steps (#1844) 2019-06-19 14:06:16 +02:00
aignatov-bio
81d10c8ce4
Remove recent protocol button on new step (#1841) 2019-06-19 12:49:22 +02:00
Oleksii Kriuchykhin
a855eade4c Merge branch 'master' into ok_SCI_3461 2019-06-11 17:48:02 +02:00
Oleksii Kriuchykhin
6e1a7a3392 Implement saving of attachments ordering on steps [SCI-3436] 2019-06-11 10:08:33 +02:00
aignatov-bio
d207cf5dce
Refactored comments over SciNote [SCI-3505] (#1808) 
* Preparing helpers for comments

* Refactored comments over scinote

* Update events
 2019-06-04 14:40:21 +02:00
Anton Ignatov
c9a29b12ba Merge branch 'master' into features/marvinjs-integration 2019-05-31 10:27:14 +02:00
Alex Kriuchykhin
c49dbe5c44
Merge pull request #1810 from okriuchykhin/ok_SCI_3511 
Fix RTE editor initialization for new step in protocol [SCI-3511]
 2019-05-30 12:54:36 +02:00
Oleksii Kriuchykhin
d061aec5cd Fix RTE editor initialization for new step in protocol [SCI-3511] 2019-05-29 18:33:20 +02:00
Oleksii Kriuchykhin
2c9ced0c75 Fix step numbering update on reposition [SCI-3507] 2019-05-29 12:20:35 +02:00
aignatov-bio
fb30e6b6e5
Add check for refreshProtocolStatusBar function exist (#1794) 2019-05-22 10:31:29 +02:00
Oleksii Kriuchykhin
84a2ad4487 Refactor the async thumbnail reloading (spinner) [SCI-3461] 2019-05-21 17:29:33 +02:00
mlorb
be0393e642
Merge pull request #1785 from biosistemika/lm-ml-sci-3193 
Update protocol status bar upon protocol changing [SCI-3193]
 2019-05-21 15:28:58 +02:00
Mojca Lorber
b479a6a145 Cover all use cases for updating protocol status bar 2019-05-20 16:09:43 +02:00
aignatov-bio
20b626d791
Fix warning message issue in step description [SCI-3479] (#1778) 
* Fix warning message issue
 2019-05-20 11:19:53 +02:00
Anton Ignatov
259b75a6ba Merge branch 'master' into features/marvinjs-integration 2019-05-16 09:28:48 +02:00
aignatov-bio
3633274c8f
Fix import for eln (#1741) 2019-05-13 10:22:30 +02:00
Anton Ignatov
dcf94e78e1 Merge branch 'master-with-note-section' into feature/marvinjs-integration 2019-05-08 14:03:41 +02:00
Miha Mencin
0a7696200a
Merge pull request #1732 from aignatov-bio/ai-sci-3413-tinymce-step-not-loading 
Clear step edit textarea status before going to edit mode [SCI-3413]
 2019-05-07 16:36:04 +02:00
Anton Ignatov
ea545801aa Clear edit textarea status before going to editmode 2019-05-07 15:54:32 +02:00
Mojca Lorber
46e8f80965 Fix bug when saving empty step description 2019-05-06 17:14:19 +02:00
aignatov-bio
cc8a152278
Fix step attachments sorting (#1718) 2019-05-06 09:56:26 +02:00
Anton Ignatov
2847ec7609 Add env variable and check for MarvinJS available 2019-04-28 17:08:18 +02:00
Anton Ignatov
54731856f0 Finish step chemical attachments 2019-04-27 19:08:40 +02:00
Anton Ignatov
46f0e0c0c2 Add marvin js assets to assets sort and name field 2019-04-27 12:46:45 +02:00
aignatov-bio
84993ea3ef
Update protocol repository for new description format [SCI-3371] (#1689) 
* Update protocol repository for new description format

* move image clone method to concerns
 2019-04-24 13:34:56 +02:00
Urban Rotnik
11a7a975af Merge branch 'features/scinote-improvements' into master-with-note-section 2019-04-23 14:50:03 +02:00
Anton Ignatov
aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
aignatov-bio
6b45dcd475
Update eln export for new tinyMCE image format (#1680) 2019-04-19 14:44:40 +02:00
Urban Rotnik
ee3dc571e1 Update attachments view, add ordering on FE 2019-04-09 14:17:40 +02:00
Jure Grabnar
613843d095 Temp commit 2019-04-04 16:58:55 +02:00
Oleksii Kriuchykhin
ffa7c5ecb2 Fix permition checks for file editing and make protocol preview files read only [SCI-3281] 2019-04-02 16:38:53 +02:00
Jure Grabnar
171b2eeedc Remove the title of protocol steps when empty 
Closes SCI-3072
 2019-03-25 09:36:56 +01:00
Oleksii Kriuchykhin
eb3d1ea6fe Update RTE for step description [SCI-3111] 2019-03-19 17:42:49 +01:00
Oleksii Kriuchykhin
2ff5199be0 Fix TinyMCE images in protocol import [SCI-3030] 2019-02-07 16:58:38 +01:00
mz3944
f6c8af105d
Merge pull request #1434 from mz3944/mz-SCI-2903 
Fix (unite) Date and Time display formats [SCI-2903]
 2019-01-21 09:50:34 +01:00
Jure Grabnar
fe46f9c9fe Reinit tooltips after cancel/save step 
Closes SCI-2891.
 2019-01-08 15:36:44 +01:00
Matej Zrimšek
8070b7f8b5 Fix Date and Time display formats on JS side 2019-01-08 08:07:24 +01:00
mlorb
2246166107 fix protocol link tooltip again 2018-12-07 12:00:42 +01:00
mlorb
7d1817350a fix missing protocols link tooltip 2018-12-04 10:45:16 +01:00
Oleksii Kriuchykhin
2e00f1546a Fix handsontable initialization [SCI-2882] 2018-11-26 14:11:46 +01:00
Matej Zrimšek
716e74ceb4 Fix DataTable display for protocol modal [SCI-2863] 2018-11-19 07:21:29 +01:00
mlorb
e5fca1b1cd change the rich text max limit on frontend to 50000 2018-10-18 14:22:15 +02:00
Zanz2
16f9728a05 fixed to not use gon gem 2018-09-28 14:26:05 +02:00
Zanz2
c6936bc71e fixed the implementation according to PR review, now validates all table names, when multiple are present, and uses gon gem 2018-09-28 13:13:25 +02:00
Zanz2
7d093fa11d Fixed the issue, tested for all 3 reported scenarios 2018-08-31 11:18:18 +02:00
Zanz2
67f4555584 Fixed the issue, tested all 3 scenarios 2018-08-31 11:04:20 +02:00
Zanz2
27e0d27862
Merge pull request #1248 from Zanz2/zz_checklist_duplicates_bug_sci_1621 
Fixes duplicate checkbox entries in activity log [SCI-1621]
 2018-08-09 11:50:34 +02:00
Oleksii Kriuchykhin
8f5d30ad1f Fix load protocol modal [SCI-2253] 2018-08-02 14:35:19 +02:00
Oleksii Kriuchykhin
b2bd1cb849 Upgrade to Turbolinks 5 [SCI-2253] 2018-07-27 17:26:46 +02:00
Oleksii Kriuchykhin
6669beaf0e Change icons throughout the rest of application [SCI-2445] 2018-07-27 15:27:08 +02:00
Zanz2
c6ef14290a Fixes too many events getting bound to a onclick event, by removing them before attaching the event listener again 2018-07-17 11:41:42 +02:00
Oleksii Kriuchykhin
a169639b3c Fix uploaded file max size validation in JS [SCI-2590] 2018-07-05 15:23:26 +02:00
zmagod
db1944cc90 move maximum file size limit to an ENV variable [fixes SCI-2415] 2018-06-19 14:15:14 +02:00
mlorb
c4ecfc4d38 Change icons throughout sciNote - navigation, project, task cards 2018-05-22 16:55:58 +02:00
mlorb
81392362ac Final button colour changes 2018-05-18 16:24:24 +02:00
mlorb
06ce285ae2 add locales 2018-05-16 14:32:15 +02:00
Zmago Devetak
9d2303c777
Merge pull request #1115 from ZmagoD/zd_SCI_2321 
fixes images preview in repository/library [fixes SCI-2321]
 2018-05-16 12:05:33 +02:00
mlorb
7df40e56c7 UI/UX restyle - fixes throughout application part one 2018-05-08 16:33:42 +02:00
zmagod
0afe461962 fixes download link 2018-04-26 17:00:51 +02:00
Luka Murn
9bf8b5d864 Merge branch 'ok_SCI_1860' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_1860 
Conflicts:
	Makefile
	app/assets/javascripts/projects/index.js.erb
	app/assets/stylesheets/themes/scinote.scss
	config/locales/en.yml
 2018-04-12 13:16:46 +02:00
mlorb
4bf9369bc5 refactor buttons 2018-03-29 13:58:14 +02:00
Oleksii Kriuchykhin
a105e61d48 Remove tutorial [SCI-1860] 2018-03-18 13:18:05 +01:00
zmagod
7af4816ce8 removes js brakepoint 2018-01-05 17:13:39 +01:00
zmagod
3fae267547 fix import protocol preview [fixes SCI-1867] 2018-01-05 15:30:11 +01:00
okriuchykhin
b3b0e367e8
Merge pull request #889 from okriuchykhin/ok_SCI_1747 
Improve server side assets validation display for steps [SCI-1747]
 2017-12-04 14:12:43 +01:00
Oleksii Kriuchykhin
373d7e8aa6 Clear selected files after successful upload [SCI-1747] 2017-12-01 11:51:22 +01:00
Oleksii Kriuchykhin
745dac09a7 Improve clean-up of dropped files [SCI-1747] 2017-11-28 16:48:47 +01:00
Oleksii Kriuchykhin
e35031dd9a Small code fixies [SCI-1747] 2017-11-28 11:34:57 +01:00
zmagod
d200e355ed follow @Ducz0r 's suggestions 2017-11-24 11:45:07 +01:00
zmagod
afbeafb137 adds RTE images import, disables turbolinks on edit step actions 2017-11-22 16:28:14 +01:00
Oleksii Kriuchykhin
fe8b7d26c1 Improve server side assets validation display for steps [SCI-1747] 2017-11-21 13:48:06 +01:00
Mojca Lorber
a0f7030a70 fix bug with tinyMCE text validaton 2017-09-07 14:54:12 +02:00
Zmago Devetak
4873624cec Merge pull request #658 from ZmagoD/zd_SCI_1011 
Multiple file upload with drag & drop capability in steps and results
 2017-06-09 10:03:33 +02:00
zmagod
33b996ffee refactor 2017-06-09 09:49:57 +02:00
zmagod
c6bb20039b adds drag'n drop feature in task results [fixes SCI-1011], [fixes SCI-1310] and [fixes SCI-285] 2017-06-07 13:29:39 +02:00
Luka Murn
f382c04f01 Refactor JS code a bit 
Closes SCI-1323.
 2017-06-06 08:02:01 +02:00
Luka Murn
1712fc0611 Fix bug with protocol preview modal not working in protocol repo 
Closes SCI-1323.
 2017-06-05 17:10:13 +02:00
zmagod
ab4961ddb1 adds overlay partial 2017-06-05 11:31:05 +02:00
zmagod
67d902db52 refactor 2017-06-05 10:43:58 +02:00
zmagod
1c021b11db adds drag and drop files upload to steps [fixes SCI-1310] 2017-06-02 16:34:09 +02:00
ajugo
a9bd86352d Step: wrong last columns of table [fixes SCI-405] (#600) 
* Step: wrong last two columns of table after add table results [fixes SCI-405]

* Changing double quotes to single

* Adding empty line back
 2017-06-01 15:52:02 +02:00
zmagod
5806cb8e67 removes unneeded animateSpinner call 2017-05-29 09:10:11 +02:00
zmagod
b21923cf98 prevent to duplicate new step [fixes SCI-1280] 2017-05-16 11:52:07 +02:00
zmagod
2081e0a94b Merge branch 'master' of https://github.com/biosistemika/scinote-web into release-1.10.1 2017-05-10 15:14:17 +02:00
Zmago Devetak
4b816f5322 Merge pull request #568 from ZmagoD/zd_SCI_1119 
Add images to fields with rich text formatting
 2017-05-08 13:06:58 +02:00
zmagod
f784844472 fixes bug with empty checklist item [fixes SCI-1233] 2017-05-04 16:15:00 +02:00
zmagod
acc5594f1b add popup for approval to complete the Task [fixes SCI-1200] 2017-05-04 12:41:22 +02:00
Matej Zrimšek
a5cffd06f3 Removed all tutorial data from ERB, so that all tutorial code is in JS. [needed for fixing SCI-719] 2017-04-25 16:03:50 +02:00
Mojca Lorber
49574e7a06 remove behavior of not allowing the empty tables in steps 2017-04-25 10:21:16 +02:00
zmagod
55c8c498e2 add image upload functionality to result text 2017-04-24 12:28:27 +02:00
Oleksii Kriuchykhin
181d981a51 Add image preview to protocol repository [SCI-877] 2017-04-12 16:05:38 +02:00
Oleksii Kriuchykhin
5c0197220d Fix moving of the steps after adding a new one [SCI-615] 2017-04-06 12:53:21 +02:00
Oleksii Kriuchykhin
218e96b1f0 Code style fixes [SCI-999] 2017-02-16 11:45:07 +01:00
Oleksii Kriuchykhin
cf8566df33 Add task complete/uncomplete functionality [SCI-999] 2017-02-10 14:27:20 +01:00
zmagod
e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
Oleksii Kriuchykhin
100cc700c6 Fix RTF toolbar init after eding new step [SCI-943] 2017-01-26 16:37:44 +01:00
zmagod
afd8328e9c rename ortanizations -> teams 2017-01-25 14:22:06 +01:00
zmagod
8c035a1981 renames organization in assets 2017-01-25 12:12:27 +01:00
Oleksii Kriuchykhin
365eef506c Fixes merge conflicts with smart-annotations branch 2017-01-24 15:20:50 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
Oleksii Kriuchykhin
401b37956b Simplify protocol export start [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin
d555ba7905 Add export to protocol management page and code style improvements [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin
14a6705b55 Implemented protocol export through Zip::OutputStream [SCI-742] 2017-01-23 17:43:48 +01:00
zmagod
9c3bc8dac7 fixes checklist item user popover bug [fixes SCI-907] 2017-01-23 09:47:04 +01:00
zmagod
9550c6dd35 fixes highlight.js 2017-01-19 17:09:25 +01:00
zmagod
f2d5066dc7 fix some bugs 2017-01-19 11:37:59 +01:00
zmagod
88d7cb200e removed quill 2017-01-18 23:06:14 +01:00
zmagod
65fa631b1c adding tinyMce first run 2017-01-18 22:40:08 +01:00
Mojca Lorber
dde9854bf1 update protocol import/export and clone 2017-01-18 14:22:19 +01:00
Luka Murn
cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
Luka Murn
a2935c6620 Add sample info modal popup to sample smart annotations 
This MR also loads datatables.js globally (as it's required by
the modal), so I removed it everywhere in code, and it shouldn't
be used anymore (e.g. '//= require datatables').

Closes SCI-892.
 2017-01-16 15:52:02 +01:00
zmagod
3a1ec0eb5e refactor [fixes SCI-834] [fixes SCI-837] [fixes SCI-823] [fixes SCI-835] [fixes SCI-836] [fixes SCI-824] 2017-01-11 14:56:47 +01:00
zmagod
89e8946a47 expand smart annotation 2017-01-10 14:14:21 +01:00
Oleksii Kriuchykhin
4c9c9037ed Enable image preview after editing protocol and disable preview modal animation [SCI-868] 2017-01-09 17:19:46 +01:00
Oleksii Kriuchykhin
aa2b573278 Enable image preview while editing steps and code style improvements [SCI-694] 2017-01-06 15:58:23 +01:00
Mojca Lorber
4e7e261225 fix protocol preview 2017-01-06 10:10:33 +01:00