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1229 commits

Author SHA1 Message Date
Matej Zrimšek
ec7a1cb4c0 Replaced remaining related hard-coded names with constants and generalized delete samples name fetching. Minor refactoring. [SCI-848] 2017-01-06 14:23:20 +01:00
Matej Zrimšek
5d104981fd Fixed sample deletion on experiments level. Minor refactoring. [SCI-848] 2017-01-06 14:23:20 +01:00
Luka Murn
3cdd375a2d Merge pull request #388 from biosistemika/hotfix-1.6.1 
Hotfix 1.6.1
 2017-01-06 11:23:16 +01:00
Oleksii Kriuchykhin
cba064dfcc Improve error message whan importing CSV files with incorrect character encoding [SCI-815] 2017-01-05 17:00:21 +01:00
Luka Murn
ef688feb4e Hotfix 1.6.1 
Set confirmed_at to created_at when using no
email confirmations and users sign up by themselves.
 2017-01-05 15:27:18 +01:00
Oleksii Kriuchykhin
835e982292 SAnitize AJAX calls in controllers and datatables [SCI-102] 2017-01-05 13:12:22 +01:00
Oleksii Kriuchykhin
cd3924afd3 Sanitize .html_safe marked strings which contain tags [SCI-102] 2017-01-05 13:04:19 +01:00
Luka Murn
a78bb79618 Temp commit 2017-01-05 12:07:17 +01:00
mlorb
59751ec41e Merge pull request #373 from mlorb/ml_sci_709 
Add Protocol Preview to Protocol repository [SCI-709]
 2017-01-04 11:28:55 +01:00
Luka Murn
3bee9d2e12 Save an (yet unworking) version of user smart annotations 
Used so other devs can start working on smart annotations.
 2017-01-04 10:54:02 +01:00
Luka Murn
cedc6c5074 Merge pull request #382 from Ducz0r/lm-sci-166-fix 
Re-add tags index controller action to render tags [SCI-166]
 2017-01-04 10:48:09 +01:00
Luka Murn
6402acc102 Merge pull request #377 from Ducz0r/lm-sci-820-fix 
Fix 2 bugs with comments editing [SCI-820]
 2017-01-04 10:47:29 +01:00
zmagod
87ffa7f03b fixes X-WOPI-ServerVersion bug 2017-01-04 10:02:08 +01:00
zmagod
a434649f42 Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-01-03 16:35:25 +01:00
Mojca Lorber
c476faca30 fix hound 2017-01-03 11:04:09 +01:00
Mojca Lorber
e555535dfb add edit button to protocol preview modal 2017-01-03 10:04:14 +01:00
Luka Murn
af9e272b2a Re-add tags index controller action to render tags 
Closes SCI-166.
 2017-01-03 09:39:41 +01:00
Zmago Devetak
5d0e80a5e1 Merge pull request #369 from ZmagoD/zd_SCI_812 
fixes bug with samples sorting [fixes SCI-812]
 2017-01-03 08:56:59 +01:00
okriuchykhin
cce57d066c Merge pull request #370 from okriuchykhin/ok_SCI_817 
Fix issue with long samples column names in import modal [SCI-817]
 2016-12-30 15:29:32 +01:00
okriuchykhin
e8955b0304 Merge pull request #375 from okriuchykhin/ok_SCI_361 
Add sorting to Project's experiments overview [SCI-361]
 2016-12-30 15:28:53 +01:00
Oleksii Kriuchykhin
d798f1b120 Fix XSS vulnerability in protocol keywords [SCI-632] 2016-12-29 15:15:29 +01:00
Luka Murn
b931b20f02 Fix 2 bugs with comments editing 
Closes SCI-820.
 2016-12-23 20:41:23 +01:00
Oleksii Kriuchykhin
4d3e002c81 Add sorting to Project's experiments overview [SCI-361] 2016-12-23 15:40:01 +01:00
Mojca Lorber
40e3240a99 add content to preview modal 2016-12-22 11:43:11 +01:00
zmagod
e554fdf805 code refactor 2016-12-21 16:52:15 +01:00
Oleksii Kriuchykhin
53ea09c3de Fix issue with long samples column names in import modal [SCI-817] 2016-12-21 14:34:53 +01:00
zmagod
e2723a288c fixes bug with samples sorting [fixes SCI-812] 2016-12-21 14:32:28 +01:00
Oleksii Kriuchykhin
00ea3a027c Fix generation of preview url for new steps and results [SCI-694] 2016-12-20 16:10:53 +01:00
Oleksii Kriuchykhin
cbef971d85 Fix timeouts when fetching images from S3 [SCI-694] 2016-12-20 15:36:07 +01:00
Oleksii Kriuchykhin
d2b76d8385 Improved image preview modal [SCI-694] 2016-12-19 17:36:18 +01:00
Zmago Devetak
c8631077df Merge pull request #361 from biosistemika/improved-sample-table 
Improved sample table
 2016-12-16 15:37:54 +01:00
zmagod
6d2fb3b02c Merge branch 'improved-sample-table' of https://github.com/biosistemika/scinote-web into zd_SCI_790 2016-12-14 17:05:00 +01:00
okriuchykhin
c4ff12be51 Merge pull request #349 from okriuchykhin/ok_SCI_783 
Fix columns ordering when deleting custom fields [SCI-783]
 2016-12-14 16:19:20 +01:00
Oleksii Kriuchykhin
de8eed0a19 Fix hound warning [SCI-783] 2016-12-14 15:27:24 +01:00
Oleksii Kriuchykhin
fa1cf1f04d Better handling of columns deleting with fixing columns ordering [SCI-783] 2016-12-14 15:23:00 +01:00
zmagod
3c1a275510 fixes invited user samples table [fixes SCI-790] 2016-12-13 10:56:13 +01:00
Mojca Lorber
2cfcba0ceb add protocol preview modal 2016-12-13 10:39:18 +01:00
zmagod
4b0e2baa3f fixes breadcrumbs in secondary nav 2016-12-12 16:03:14 +01:00
zmagod
8dd8a7e7cd Merge branch 'improved-sample-table' of https://github.com/biosistemika/scinote-web into zd_improved_samples_table_SCI_774_775_778_777 2016-12-12 15:52:25 +01:00
zmagod
8bb452e4f7 trim long names [fixes SCI-774] adds secondary navigation and sidebar [fixes SCI-775] 2016-12-12 10:30:03 +01:00
zmagod
de3099e4d1 removes asset_helper, fixes loading of processed thumbnails in results and steps and when loading protocols from repository 2016-12-09 13:59:49 +01:00
Luka Murn
1a8b141b95 Add delete custom field functionality 2016-12-09 13:49:19 +01:00
Luka Murn
754c90b612 Edit functionality now works 2016-12-09 13:18:59 +01:00
Mojca Lorber
0e3526c9ad Merge branch 'mlorb-ml-sci-696' into improved-sample-table 
Conflicts:
	app/assets/javascripts/samples/sample_datatable.js
 2016-12-08 15:44:50 +01:00
zmagod
40fdfef67f setup delayed_paperclip gem 2016-12-08 15:24:14 +01:00
zmagod
ac52e643be cleanup direct upload 2016-12-08 11:26:13 +01:00
okriuchykhin
cb2abfa7a9 Merge pull request #325 from okriuchykhin/ok_SCI_712 
Added form for adding new columns to samples table into dropdown [SCI-712]
 2016-12-06 15:00:01 +01:00
Oleksii Kriuchykhin
f6dd64772a Add columns to samples table without page reload [SCI-712] 2016-12-06 13:22:26 +01:00
Oleksii Kriuchykhin
22dabd2177 Added form for adding new columns to samples table into dropdown [SCI-712] 2016-12-06 13:17:05 +01:00
Mojca Lorber
849f78b4df implement reordering of columns in the samples table and change from local to database storage 2016-12-05 11:34:36 +01:00
zmagod
7725374c42 refactor sample types/groups [fixes SCI-700] 2016-12-02 09:58:35 +01:00
zmagod
83aae59eed adds sample groups index page 2016-12-02 09:33:09 +01:00
Luka Murn
372b455d7d Merge pull request #332 from Ducz0r/lm-sci-750-751 
Fix inviting users not working
 2016-12-01 15:52:40 +01:00
Luka Murn
6a770f6a7e Fix inviting users not working 
Closes SCI-750, SCI-751.

Probably reopens parts of SCI-746.
 2016-12-01 15:46:37 +01:00
Matej Zrimšek
3bdaa4bcef Some token authentication refactoring and error handilng fixes. [closes SCI-689] 2016-12-01 15:38:56 +01:00
Matej Zrimšek
46465060d0 Added automatic sign in with token authentication, needed when signing in from different webpage. [closes SCI-689] 2016-11-30 16:56:56 +01:00
Nejc Bernot
cb03ed8384 Users can now have multiple tokens 
A new token is generated whenever an edit or view file is called. Tokens have a TTL of one day.
Also enabled the toggling of both wopi and wopi test mode, using environmental variables.
 2016-11-30 16:48:42 +01:00
Luka Murn
76ec77fce4 Merge pull request #329 from biosistemika/simplify-signup 
Merge simplify-signup into master
 2016-11-30 09:41:20 +01:00
zmagod
4e4a48620c adds validation to input fields 2016-11-29 18:08:29 +01:00
zmagod
12848f15fa adds sample_type index view with all crud actions 2016-11-29 17:15:54 +01:00
Luka Murn
b5d0a39827 Fix some recaptcha form submit errors for signup pages 
Closes SCI-746.
 2016-11-29 15:53:58 +01:00
zmagod
5c0b2d7b24 init sample_types page 2016-11-29 08:57:12 +01:00
okriuchykhin
f9c8223fe5 Merge pull request #321 from okriuchykhin/ok_SCI_736 
Improve regexp for image whitelisting [SCI-736]
 2016-11-28 15:46:54 +01:00
Oleksii Kriuchykhin
cc0aab2e59 Improve regexp for image whitelisting [SCI-736] 2016-11-28 10:08:54 +01:00
okriuchykhin
31f6379866 Merge pull request #318 from okriuchykhin/ok_SCI_736 
Add whitelisting of supported image types [SCI-736]
 2016-11-28 09:32:49 +01:00
okriuchykhin
5981d1a48e Merge pull request #316 from okriuchykhin/ok_SCI_738 
Add full name field to accept invitation form [SCI-738]
 2016-11-25 16:15:23 +01:00
Oleksii Kriuchykhin
74f6455a8f Add whitelisting of supported image types [SCI-736] 2016-11-25 16:12:43 +01:00
Oleksii Kriuchykhin
3fdb20b92c Add full name field to accept invitation form [SCI-738] 2016-11-25 11:15:10 +01:00
Luka Murn
87d3280847 Refactor registrations_controller code slightly 2016-11-25 09:56:07 +01:00
Oleksii Kriuchykhin
698e07a3b5 Enable reCaptcha and auto log in on confirm invitation form [SCI-706] 2016-11-24 14:11:02 +01:00
Luka Murn
198febfd94 Fix user projects not working 2016-11-23 13:19:10 +01:00
Luka Murn
fba646bfba Fix Hound errors 2016-11-22 15:19:12 +01:00
Luka Murn
7cbe44d1f2 Refactor user projects & user my modules code 2016-11-22 15:16:26 +01:00
Luka Murn
201b1a48d5 Refactor user my modules code 2016-11-22 15:07:18 +01:00
Luka Murn
e0607f7891 Refactor step comments code 2016-11-22 15:01:48 +01:00
Luka Murn
0c96036de8 Refactor some sample types code 2016-11-22 14:59:57 +01:00
Mojca Lorber
60f23b109b integrate reCaptcha into sciNote 2016-11-22 14:57:41 +01:00
Luka Murn
8ff5285179 Refactor some sample groups code 2016-11-22 14:57:01 +01:00
Luka Murn
f5e286b1f6 Remove unused code for some more comments 2016-11-22 14:52:43 +01:00
Luka Murn
1f7a8712fb Update task comments & task tags controllers & localized Strings 
(Remove a lot of unused code)
 2016-11-22 14:26:35 +01:00
Luka Murn
59eb1c1d18 Remove unused new, edit user_projects views 2016-11-19 17:01:10 +01:00
Luka Murn
911b7ba72f Remove unused new user_my_module view 2016-11-19 16:59:24 +01:00
Luka Murn
6999105e51 Remove tags 2016-11-19 16:57:08 +01:00
Luka Murn
008b31df0c Finish removing new comment forms 2016-11-19 16:54:55 +01:00
Luka Murn
595b213b1a Changes up to samples in views folder 2016-11-19 16:51:40 +01:00
Luka Murn
3be30c0e7a Re-introduce fix for SCI-650 that was lost during merge 
Closes SCI-650.
 2016-11-18 10:57:03 +01:00
Luka Murn
26d04b1f3c Merge branch 'rich-text-formatting' into 'master' 
Conflicts:
	Gemfile.lock
	app/assets/stylesheets/themes/scinote.scss
 2016-11-17 16:39:33 +01:00
Luka Murn
9d3685f872 Merge branch 'gamification' into 'master' 
Conflicts:
	app/controllers/users/invitations_controller.rb
	app/controllers/users/settings_controller.rb
 2016-11-17 16:30:18 +01:00
Luka Murn
04749c3b2c Allow inviting of existing, unconfirmed users 
Closes SCI-676.
 2016-11-15 15:04:31 +01:00
Luka Murn
861e7cf72d Update invited user form so it works if user inputs empty team name 
Closes SCI-650
 2016-11-11 17:27:32 +01:00
Luka Murn
564274a588 Set invited_by field to invited users 2016-11-10 14:45:24 +01:00
Mojca Lorber
d2ae11f1af fix hound 2016-11-10 14:16:54 +01:00
Mojca Lorber
3e162b3a93 remove redcarpet gem - markdown 2016-11-10 14:11:32 +01:00
mlorb
0793fb9f11 Merge pull request #260 from mlorb/ml_sci_614 
Add notification for removing user from team and removing user from project [SCI-614]
 2016-11-08 11:30:49 +01:00
Mojca Lorber
27c83992b4 refactoring notification method 2016-11-07 15:31:06 +01:00
Luka Murn
ce7733e9e9 Also add notification when UserOrganization is created 2016-11-07 09:47:30 +01:00
Luka Murn
0ab62576a2 Add new modal to organization page, remove old modal code 2016-11-07 09:43:10 +01:00
Luka Murn
6fe0d6b3df A working invite modal! 2016-11-07 09:43:10 +01:00
Luka Murn
ccf8932611 Add first version of invite users modal 2016-11-07 09:43:09 +01:00
Oleksii Kriuchykhin
fe6724431e Futher improvement of samples assign/unassign logging [SCI-605] 2016-11-07 09:29:56 +01:00
Oleksii Kriuchykhin
a1bfacef86 Improved samples assign/unassign logging [SCI-605] 2016-11-03 17:59:32 +01:00
Oleksii Kriuchykhin
3d25da5db7 Fixed bug with protocol loading from file [SCI-605] 2016-11-03 14:15:22 +01:00
Mojca Lorber
749b108928 fix hound 2016-11-02 13:32:15 +01:00
Mojca Lorber
a2213e23b3 add notification for removing user from team and removing user from project 2016-11-02 11:52:41 +01:00
Oleksii Kriuchykhin
e8d20dfc01 Added additional activities [SCI-605] 2016-11-02 10:43:36 +01:00
Luka Murn
eec6b1403d Merge pull request #247 from Ducz0r/lm-hotfix-blank-current-org 
Add check in application controller to always set current org if nil
 2016-10-25 11:53:05 +02:00
Zmago Devetak
266d1415d0 Merge pull request #246 from ZmagoD/zd_SCI_599 
fixes error when removing user from team [SCI-599]
 2016-10-25 11:52:44 +02:00
Luka Murn
7885fd0f39 Add check in application controller to always set current org if nil 2016-10-25 11:39:57 +02:00
zmagod
6a328969f0 reset current_user if the user leaves the team [fixes SCI-599] 2016-10-25 09:53:02 +02:00
zmagod
24b81c96f6 sets current_organization_id if no current_organization is available for current_user, hides separator if only one team present [fixes SCI-608] 2016-10-24 21:20:41 +02:00
zmagod
e02132578a first run 2016-10-24 20:07:20 +02:00
Zmago Devetak
4f5b7ad8ad Merge pull request #228 from ZmagoD/zd_SCI_585 
Removes archived projects from index page [fixes SCI-585]
 2016-10-21 11:33:01 +02:00
Oleksii Kriuchykhin
5be7904f5a Fix hound warnings [SCI-557] 2016-10-21 09:37:24 +02:00
zmagod
db806f3c10 hide private projects 2016-10-21 09:06:19 +02:00
Oleksii Kriuchykhin
0c1ff06f21 Fixes issue with new comments and date separator SCI-557 2016-10-20 22:33:15 +02:00
zmagod
4c086a6fc1 removes archived projects from index page [fixes SCI-585] 2016-10-20 13:13:44 +02:00
zmagod
557957c857 fixed issue with mozilla browsers 2016-10-17 15:21:19 +02:00
zmagod
1614cbc2b2 fixes repeat tutorial button and localization typos 2016-10-17 15:16:22 +02:00
zmagod
931cba2666 fixes hound [fixes SCI-512] 2016-10-17 15:10:26 +02:00
zmagod
fa36488397 fixed new project form 2016-10-17 15:10:26 +02:00
zmagod
8f24d0d80c fixed new user registration 2016-10-17 15:10:26 +02:00
zmagod
3117a464f0 fixed controllers 2016-10-17 15:10:26 +02:00
zmagod
bb9c03df24 fixes controllers 2016-10-17 15:10:26 +02:00
zmagod
d7f514db09 fixes search 2016-10-17 15:10:26 +02:00
zmagod
efe031d766 setup current_organization in all controllers 2016-10-17 15:10:26 +02:00
zmagod
d86a4dd311 setup global team switch view and controller action 2016-10-17 15:10:26 +02:00
Matej Zrimšek
a6a2a237aa Removed unneeded ERB tags, which caused error. Minor refactoring. 2016-10-17 11:57:47 +02:00
Matej Zrimšek
ece89da391 Removed ruby constants duplicates in JS, because of caching problems. 2016-10-17 11:57:47 +02:00
Matej Zrimšek
5966911b92 Fixed Hound alerts. 2016-10-17 11:57:46 +02:00
Matej Zrimšek
0780bd2416 Ruby constants are now automatically available in JS. Refactoring was needed. 2016-10-17 11:57:37 +02:00
Matej Zrimšek
a3dfb59558 Added remaining constants. 2016-10-17 11:30:05 +02:00
Matej Zrimšek
21ec05d541 Refactored searches (user and globals earch) and used constants. 2016-10-17 11:17:59 +02:00
Luka Murn
bdaeb4db13 Add notification mailer preview 2016-10-13 08:56:04 +02:00
mlorb
78f7879c04 Merge pull request #216 from mlorb/ml_sci_555 
Adding update notifications in settings [SCI-555]
 2016-10-13 08:53:55 +02:00
Mojca Lorber
42f6b679f8 Adding system notifications email function in settings 2016-10-12 11:50:26 +02:00
Luka Murn
cccabcdd7b Remove invitation_to_organization email 
This email is no longer needed, because if user enables
assignment notifications, he/she will already receive an
email whenever he/she is added to a new organization/team (via
notifications email).
 2016-10-12 10:54:36 +02:00
Oleksii Kriuchykhin
5399033fce Added user settings for email notifications [SCI-443] 2016-10-11 16:43:17 +02:00
Jure Grabnar
1f67aec258 Prevent destroying protocols when file is edited 
SCI-552 #close
 2016-10-06 16:13:42 +02:00
Jure Grabnar
b52e596209 Update protocol timestamp on put_file 
SCI-551 #close
 2016-10-06 14:37:42 +02:00
Oleksii Kriuchykhin
c783e9a03d Code fix after rebase with latest master [SCI-442] 2016-10-05 15:51:11 +02:00
Oleksii Kriuchykhin
868ffd03d6 JS code improvement [SCI-442] 2016-10-05 15:51:11 +02:00
Oleksii Kriuchykhin
246dae4f46 Code style improvements according to hound [SCI-442] 2016-10-05 15:51:11 +02:00
Oleksii Kriuchykhin
8907e54b49 Global notifications index page added [SCI-442] 2016-10-05 15:51:11 +02:00
Oleksii Kriuchykhin
8b5b0723d1 Initial code commit 2016-10-05 15:51:11 +02:00
zmagod
9c7a690944 fixed type, fixed settings controller, fixes setting view on mobile devices 2016-10-05 14:33:22 +02:00
Jure Grabnar
85d2370d28 Change some values to string in CheckFileInfo 2016-10-04 18:19:36 +02:00
Jure Grabnar
3e74c96085 Add wd* params to iframe action url 2016-10-04 18:00:08 +02:00
zmagod
a68e7abc57 first run notification settings 2016-10-04 15:52:48 +02:00
Luka Murn
61cb9651c7 Merge pull request #188 from biosistemika/global-notifications 
Global notifications
 2016-10-04 08:30:50 +02:00
zmagod
c9bbab1004 added html_safe to outputed message, hide notifications number when dropdown is toggled, clear all unseen notification form count when the dropdown is toggled, generate notification only to other users 2016-10-03 20:31:00 +02:00
Jure Grabnar
72c5824e67 Remove navbar for viewing WOPI files 2016-10-03 20:02:13 +02:00
Jure Grabnar
ec82f64df2 Add WOPI breadcrumbs 2016-10-03 19:45:39 +02:00
Jure Grabnar
1949b1fe88 Add CloseUrl to WOPI 2016-10-03 18:25:01 +02:00
Jure Grabnar
03567d6208 Prevent archive of locked result asset 2016-10-03 17:07:57 +02:00
mlorb
153b692c0c Merge pull request #181 from mlorb/ml_sci_321 
Displaying more information for individual samples in Sample table [SCI-321]
 2016-10-03 16:37:35 +02:00
zmagod
0d23f05698 Merge branch 'global-notifications' of https://github.com/biosistemika/scinote-web into zd_SCI_440 2016-10-03 16:14:22 +02:00
Jure Grabnar
f727289935 Add lock check for editing result 2016-10-03 13:43:35 +02:00
zmagod
947096862d fixed hound 2016-10-03 11:40:59 +02:00
zmagod
ea17182372 generate notifications [fixes SCI-440] 2016-10-03 11:37:29 +02:00
zmagod
2ee02ec472 mark all seen notifications 2016-10-03 08:20:23 +02:00
Jure Grabnar
1e14955ade Prevent deleting asset on step update 2016-10-01 18:47:05 +02:00
Jure Grabnar
d9fa882d6a Add check for locked files on step delete 2016-10-01 14:51:55 +02:00
Jure Grabnar
a2d6d9a29a Add WOPI controlls to result 2016-10-01 11:23:32 +02:00
Jure Grabnar
ff47f29dc2 Add wopi file activity 
SCI-393 #close
 2016-09-29 16:16:42 +02:00
zmagod
e1a1b93d44 fixed migrations 2016-09-29 14:49:58 +02:00
Jure Grabnar
ed8df3cc62 Add favicon url to iframe 2016-09-29 12:19:29 +02:00
Jure Grabnar
bc22697ebe Take/release space in putfile 2016-09-28 18:02:47 +02:00
Jure Grabnar
5e5f4c5ed4 Add text extraction on unlock 2016-09-28 17:36:53 +02:00
Jure Grabnar
02ddd64aaa Set last_modified_by on put_file 2016-09-28 17:00:19 +02:00
zmagod
cab1e9b521 start implement toolbar view 2016-09-28 16:03:52 +02:00
Jure Grabnar
e96e8486ea Add check file permissions to assets controller 
SCI-502 #close
 2016-09-28 09:33:44 +02:00
Jure Grabnar
25c9ec67b3 Check permissions in wopi_controller 2016-09-28 09:33:44 +02:00
Jure Grabnar
5aea0fbb19 Refactor the rest of WOPI logic from Nejc 2016-09-28 09:33:44 +02:00
Jure Grabnar
c1ae4360a3 Refactor WopiController 2016-09-28 09:33:44 +02:00
Jure Grabnar
0c9292e4fc Catch GET_SHARE_URL post file action 2016-09-28 09:33:44 +02:00
Jure Grabnar
3600fbfe64 Fix UnlockUnlockedFile action 
The time was nigh!
 2016-09-28 09:33:44 +02:00
Jure Grabnar
674326e761 Add timestamp WOPI checking 
Change status error code to 500.
 2016-09-28 09:33:44 +02:00
Jure Grabnar
b51f2a3027 Add basic WOPI proof checking 
Still missing validation of timestamp.
Remove web_console gem for testing.
Add relevant tests from manual for WOPI proof.
 2016-09-28 09:33:44 +02:00
Nejc Bernot
1b260785ec First working version of office integration 
Only works on scinote-preview
 2016-09-28 09:33:44 +02:00
Nejc Bernot
b2b1d5a8f5 Initial commit of WOPI integration 2016-09-28 09:33:44 +02:00
zmagod
dad0d3868b fixing hound 2016-09-27 17:31:37 +02:00
zmagod
2235778110 fixed project and task comments + fixed date issue 2016-09-27 16:19:31 +02:00
Mojca Lorber
c2b742374f adding popup sample info 2016-09-23 17:45:02 +02:00
Matej Zrimšek
13e886f7a9 Removed unneeded upper case for errors which had them, along with their refactoring. [fixes SCI-408] 2016-09-22 17:35:23 +02:00
Matej Zrimšek
234918a76d Word wrapping and truncating added to whole application [fixes SCI-458]. Fixed some bugs which were related to long/too long text and validations. Modified parts of application to accomodate for longer text limits. 2016-09-21 19:48:18 +02:00
Zmago Devetak
5fedcb4be2 Merge pull request #160 from ZmagoD/zd_SCI_464 
Fixes restore experiment error [fixes SCI-464]
 2016-09-21 19:24:33 +02:00
zmagod
06b1992e94 Merge branch 'zd_SCI_436' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_436 2016-09-21 19:20:55 +02:00
zmagod
8a8bf10f08 clean up flash label 2016-09-21 19:09:57 +02:00
zmagod
bf8e2a208f fixes restore experiment error [fixes SCI-464] 2016-09-21 08:34:32 +02:00
zmagod
42bbc47f5f first working version 2016-09-20 17:06:07 +02:00
zmagod
da86208441 styled step comments 2016-09-20 14:13:40 +02:00
zmagod
0ca65aeca5 fixed step comment sorting 2016-09-20 13:31:50 +02:00
Matej Zrimšek
c2f0106993 Replaced hardcoded values with unified constants. Minor refactoring. Also front-end error handling was updated accordingly. [fixes SCI-408] 2016-09-16 15:56:44 +02:00
Zmago Devetak
431227c0a4 Merge pull request #147 from maslick/resultCommentsError1000Chars 
Fixed: Comments in results have no error message if the text exceeds 1000 characters
 2016-09-16 09:38:38 +02:00
Matej Zrimšek
76ff34a8a9 URL presigning is now used only when using S3 file uploading (caused error for local uploading) [fixes SCI-447], along with some refactoring. 2016-09-13 18:56:47 +02:00
zmagod
7c363d5ade fixed security issue 2016-09-13 13:57:31 +02:00
zmagod
3d5a42cc27 refactor results controller 2016-09-13 13:26:04 +02:00
zmagod
222ddf7438 fixed houd error 2016-09-13 13:26:04 +02:00
zmagod
691ae94d2c enabled to delete results in task archive [fixes SCI-370] 2016-09-13 13:26:04 +02:00
Pavel Maslov
15ea8fc0dc Bug fixed: comments in results have no error message if the text exceeds 1000 characters. 2016-09-13 12:01:56 +02:00
Zmago Devetak
1368716aa0 Merge pull request #130 from ZmagoD/zd_SCI_348 
project overview - updating (or creating new) experiment details
 2016-09-08 12:49:35 +02:00
Matej Zrimšek
b0ad6d0753 Fixed result file deletion and result name updating [fixes SCI-409]. Fixed step name and checklists names and its items names checking, and items removing [fixes SCI-407]. 2016-09-06 23:26:00 +02:00
zmagod
b44a284b54 sets edit experiment validation 2016-09-06 11:46:28 +02:00
zmagod
9d469f9092 sets front end validation for new experiment modal [fixes SCI-348] 2016-09-06 11:44:03 +02:00
Zmago Devetak
9440371f3f Merge pull request #131 from ZmagoD/zd_SCI_400 
Sets front end validation for experiment move action [fixes SCI-400]
 2016-09-06 11:39:38 +02:00
zmagod
c526cab498 removed commented code 2016-09-06 11:38:02 +02:00
zmagod
667fb67052 sets front end validation for experiment move action [fixes SCI-400] 2016-09-02 16:31:17 +02:00
zmagod
4afaa50ce0 fixed multiple tables check 2016-09-01 13:49:12 +02:00
zmagod
111cb81d08 clear tables from report [fixes SCI-247] again 2016-09-01 13:38:09 +02:00
Mojca Lorber
a35bf7182f fixes troubles 2016-08-30 09:43:39 +02:00
Mojca Lorber
b07f1af90f fixes hound again again 2016-08-29 17:08:00 +02:00
Mojca Lorber
7f8bb9be53 fixes hound again 2016-08-29 13:59:51 +02:00
Mojca Lorber
60b0d69a72 fixes hound 2016-08-29 13:56:05 +02:00
Mojca Lorber
53cdbc2638 fixes notification when adding new sample 2016-08-29 13:45:54 +02:00
Matej Zrimšek
e3a7f45fdf Merge branch 'master' into mz_file_upload_and_client_side_upgrade 
Conflicts:
	app/assets/javascripts/application.js
	app/views/results/_result_asset.html.erb
	app/views/steps/_step.html.erb
 2016-08-26 11:13:40 +02:00
Matej Zrimšek
782d384e26 Spinner now doesn't hide prematurally on file uploading. Some recently introduced bugs quickfixes (report images not showing, locale missplealing, client-side blank tables deletion deleted all tables, error if no asset present in a step). 2016-08-25 22:26:53 +02:00
Matej Zrimšek
04d9163ff6 Paperclip file spoofing corrected/modified. 2016-08-25 18:57:06 +02:00
Luka Murn
8018cff02e Merge pull request #103 from Ducz0r/bb_edit_delete_comments 
Edit&delete comments
 2016-08-25 17:18:48 +02:00
Zmago Devetak
b090fd8d5b Merge pull request #95 from ZmagoD/zd_SCI_374 
adds edit workflow link if no workflow [fixes SCI-374]
 2016-08-25 14:07:33 +02:00
Luka Murn
a480c8d403 Styling fixes 2016-08-25 13:59:50 +02:00
Luka Murn
8592c13ed4 Remove now obsolote controller actions 2016-08-25 13:51:31 +02:00
Luka Murn
b0d7b9dc75 Generate activities when editing/deleting comments 2016-08-25 13:51:31 +02:00
Luka Murn
24dd25d9f5 Add edit/delete result comment functionality 
Lessons learned during this fix:
Don't use dependant: :destroy on both ends of association
between 2 ActiveRecords, or you will run into stack overflow.
 2016-08-25 13:51:31 +02:00
Luka Murn
bac0455435 Add edit&delete functionality to step comments 
This commit also:
* fixes a bug in permission_helper.rb,
* fixes comments.js a bit,
* adds 2 more re-renders of dropdown position calculations to canvas.js and projects/index.js.
 2016-08-25 13:51:31 +02:00
Luka Murn
512efd3812 Fix 2 lines that were too long 2016-08-25 13:51:31 +02:00
Luka Murn
c92d016f65 Add edit&delete module/task comments functionality 
This required a minor fix of comments.js.
 2016-08-25 13:51:31 +02:00
Luka Murn
f0d9cb96fa Add edit project comments functionality 2016-08-25 13:51:30 +02:00
Luka Murn
15c0baeee8 Add delete project comment functionality 
This commit also removes the old code from @bberic.
 2016-08-25 13:51:30 +02:00
scibb
a76d82d188 delete and edit comments for projects, protocols, results, and workflow elements 2016-08-25 13:51:30 +02:00
zmagod
f515366d91 fixes workflowing after updating description, fixes canvas bug 2016-08-25 09:11:42 +02:00
jbargu
5c104ac050 Merge pull request #93 from jbargu/jg_sci_378_move_experiment_error 
Fix 404 move experiment error
 2016-08-24 16:35:29 +02:00
Jure Grabnar
00da7efb44 Merge remote-tracking branch 'origin/jg_SCI_328_moving_workflows' 
Conflicts:
	app/models/experiment.rb

SCI-328 #close
 2016-08-24 13:11:10 +02:00
Jure Grabnar
3e5e9aed22 Fix 404 on move experiment 
[fixes SCI-378]
 2016-08-24 11:09:03 +02:00
mlorb
5c8d669cac Merge pull request #81 from mlorb/ml_sci_364 
fixes edit experiment [SCI-364]
 2016-08-23 16:49:20 +02:00
Zmago Devetak
396325bd67 Merge pull request #86 from ZmagoD/zd_SCI_365 
changed experiment create redirection [fixes SCI-365]
 2016-08-23 16:30:48 +02:00
Zmago Devetak
65049692ea Merge pull request #78 from ZmagoD/zd_SCI_349 
updating thumbnail
 2016-08-23 16:22:07 +02:00
Mojca Lorber
322be64b5f change experiment path 2016-08-23 14:44:22 +02:00
Jure Grabnar
67768c8865 Fix Hound errors 2016-08-23 11:08:10 +02:00
zmagod
66b8a3055d changed experiment create redirection [fixes SCI-365] 2016-08-23 09:03:39 +02:00
Jure Grabnar
c0edf51054 Fix bounding box algorithm, can move new modules 2016-08-23 09:00:25 +02:00
Jure Grabnar
667b7671a6 Add connections for moved workflows 2016-08-22 17:26:21 +02:00
Mojca Lorber
75c52d20e5 fixes hound 2016-08-22 15:30:27 +02:00
Mojca Lorber
131d0d269a fixes edit experiment 2016-08-22 15:18:02 +02:00
zmagod
d38f29d207 set ajax loading of experiments images [fixes SCI-349] 2016-08-22 11:29:19 +02:00
mlorb
0832466d20 Merge pull request #76 from mlorb/ml_sci_286 
fixes notifications when creating new sample type or group [SCI-286]
 2016-08-22 08:54:28 +02:00
Mojca Lorber
1c220aba7b delete comment 2016-08-22 08:50:48 +02:00
zmagod
cac5033eba set ajax for workflow img 2016-08-19 15:36:12 +02:00
Zmago Devetak
99aa66cd84 Merge pull request #74 from ZmagoD/zd_SCI_346 
check search input string [fixes SCI-346]
 2016-08-19 14:01:56 +02:00
Mojca Lorber
799cac1238 fixes hound 2016-08-19 13:55:34 +02:00
Jure Grabnar
80498260e5 Add backend for moving task from canvas 2016-08-19 13:53:43 +02:00
Mojca Lorber
5695842fe3 fixes notifications when creating sample types and groups 2016-08-18 16:05:15 +02:00
zmagod
d62500cb56 check search input string [fixes SCI-346] 2016-08-18 13:14:31 +02:00
zmagod
fa08b861d0 fixed experiments archive bug 2016-08-18 10:55:29 +02:00
Matej Zrimšek
4ad384df5a Fixed hound alerts. 2016-08-17 21:02:05 +02:00
Matej Zrimšek
27a9dac412 File permissions corrected, with some refactoring. 2016-08-17 18:23:24 +02:00
Matej Zrimšek
e4a6a3944e Added deleting of files on S3 server when editing/removing a file. Some refactoring. 2016-08-17 18:13:35 +02:00
Matej Zrimšek
ccdccc5cf1 Changed file uploding to work properly with multiple files and be user friendly in case of errors. Some function names refactoring. 2016-08-17 18:11:13 +02:00
Matej Zrimšek
854ef0d227 Special characters caused error [fixes SCI-315]. 2016-08-17 18:10:47 +02:00
Matej Zrimšek
c87ba5b45c Multiple files upload handling and user experience improved. Spinner now also prevents user from accidentally leaving page. 2016-08-17 18:10:32 +02:00
Matej Zrimšek
951cf67b3d A lot of file uploading edge cases considered. File uploading is now actually redirected to S3 server, as before was not. Error functions changed and error output format specified, which should be used consistently throughout the application. Some other refactoring. 2016-08-17 18:08:21 +02:00
Jure Grabnar
78cf4f396e render_403 and 404 now return true 
To prevent any: render_403 and return type of bugs
 2016-08-17 15:46:30 +02:00
Jure Grabnar
0cdea0b51a Add modal for moving task on canvas 2016-08-17 15:46:30 +02:00
zmagod
6c5cc8aac9 fixes notification [fixes SCI-337] 2016-08-17 13:17:40 +02:00
Zmago Devetak
da735a51f4 Merge pull request #62 from ZmagoD/zd_SCI_318 
Zd sci 318
 2016-08-17 10:01:10 +02:00
zmagod
850f5d8dad fixing hound alerts 2016-08-17 09:44:23 +02:00
zmagod
7abc8f3a90 Merge branch 'master' into experiment-level 2016-08-17 09:28:35 +02:00
Jure Grabnar
a29b56b0bd Even more candy for our dog 2016-08-16 09:15:29 +02:00
Jure Grabnar
042a33f2c7 Add activity for moving 2016-08-16 08:49:24 +02:00
zmagod
852fe499fb clean up linked protocol 2016-08-12 16:31:40 +02:00
Jure Grabnar
c387439fb2 Fix projects query for experiments 
Remove unneeded word in view
 2016-08-12 11:36:52 +02:00
Jure Grabnar
d7341d0383 Set actions/routes/view for move experiment 2016-08-12 11:26:18 +02:00
Jure Grabnar
9173c83502 Select current project in clone modal 2016-08-11 17:20:06 +02:00
Jure Grabnar
3c36293770 Add activity for cloning experiment 2016-08-11 17:00:33 +02:00
Jure Grabnar
3b259d34b0 Basic cloning of experiment works 
Still missing:
- cloning of assets
- cloning of experiment image
 2016-08-11 15:13:36 +02:00
Jure Grabnar
7f21ae138a Set clone actions/routes/view 
DRY code for showing AJAX on project#show page
 2016-08-11 09:46:15 +02:00
Jure Grabnar
1ca34a7986 Fix result texts/tables 2016-08-10 15:44:33 +02:00
Jure Grabnar
52e6d7d300 Fix step comments 2016-08-10 15:44:33 +02:00
Jure Grabnar
3e72f29bfd Fix uploading of step assets 2016-08-10 15:44:33 +02:00
Jure Grabnar
d69195a4f6 Fix uploading of result assets 2016-08-10 15:44:33 +02:00
zmagod
c866e90b33 Merge branch 'zd_add_image_to_project_preview' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_add_image_to_project_preview 2016-08-10 11:33:37 +02:00
zmagod
5f3a5cb845 fixed project overview 2016-08-09 14:26:08 +02:00
Jure Grabnar
0ca5725f9b Archive/restore of experiments now work 2016-08-08 16:35:45 +02:00
zmagod
1a56396eb5 add workflow image to project overview page [fixes SCI-41] 2016-08-08 16:02:17 +02:00
Jure Grabnar
2bd74866e0 Fix my_modules archive page 2016-08-08 15:04:02 +02:00
Jure Grabnar
deecbf082c Remove badly merged code 2016-08-08 13:06:20 +02:00
jbargu
3f91e7a476 Merge pull request #47 from biosistemika/jg_explvl_reports 
Update reports with experiment level

[Fixes SCI-35].
 2016-08-08 08:51:23 +02:00
zmagod
04d171997e Merge branch 'zd_SCI_41' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_41 2016-08-05 15:56:21 +02:00
zmagod
9c5c4f0a3a Merge branch 'zd_SCI_44' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_44 2016-08-05 15:23:01 +02:00
Jure Grabnar
d9702b6964 Remove unneeded new element 2016-08-05 08:36:06 +02:00
Jure Grabnar
2f0dc57ea6 Fix Hounds warning 2016-08-05 08:29:49 +02:00
Jure Grabnar
cafec6a1b4 Fix controls on experiment contents 
Also fix bug with adjencent elements not updating controls.

Fixes SCI-35.
 2016-08-04 16:05:03 +02:00
zmagod
a4ec558596 start to implement project overview page 2016-08-04 12:57:33 +02:00
zmagod
57ac34e9f4 add samples to experiment page [fixes SCI-43] 2016-08-03 12:57:51 +02:00
Jure Grabnar
aedaf2f30a Adding of experiment content now works in reports 2016-08-03 12:52:52 +02:00
Jure Grabnar
5854e72878 Add experiments_contents action 2016-08-03 12:52:52 +02:00
Jure Grabnar
acc41dae40 Add experiment content report dialog 
Adding still has to be implemented
 2016-08-03 12:52:51 +02:00
Jure Grabnar
1e334d9075 Remove unneeded "Add new report element" 2016-08-03 12:52:06 +02:00
Jure Grabnar
d82ba163ed Add experiment to report screen 
Only placeholder for now, JS still needs fixing.
 2016-08-03 12:52:06 +02:00
zmagod
d11b0b11e9 Feed the Hound 2016-08-03 09:44:05 +02:00
zmagod
caa80642c0 [fixes SCI-304], [fixes SCI-37] 2016-08-03 09:34:10 +02:00
zmagod
18d73467c8 fixed hound warning 2016-08-02 11:16:07 +02:00
zmagod
166f907780 fixed search error 2016-08-02 11:10:30 +02:00
zmagod
f184ee3f2d fixing hound warnings 2016-08-02 09:13:30 +02:00
zmagod
9581e2751f fixes samples page for experiment level [fixes SCI-44] 2016-08-02 08:44:07 +02:00
Luka Murn
ecf5b5a2c1 Feed the Hound 2016-07-29 16:46:25 +02:00
zmagod
95da62adde fixed hound 2016-07-29 16:38:42 +02:00
zmagod
25b99b6570 fixed search [fixes SCI-261] 2016-07-29 16:32:54 +02:00
Luka Murn
b085aa1db3 Remove uneccesary project_activities HTML pages 2016-07-29 16:06:35 +02:00
Luka Murn
34af50a9d0 Fix breadcrumbs & sidebar so it works 2016-07-29 15:47:41 +02:00
Luka Murn
4ea86d6aa1 Code style fixes 2016-07-29 10:41:08 +02:00
Luka Murn
edafcaeed6 Move route module_archive_project -> module_archive_experiment 
Also add some new routes, move some templates.
 2016-07-29 10:25:02 +02:00
Luka Murn
ebda92ef05 Add experiments_controller 2016-07-29 10:21:21 +02:00
Luka Murn
b64e200b91 Refactor canvas a lot. 
Also refactor localization files concerning canvas.
 2016-07-28 16:41:10 +02:00
zmagod
e95f518964 refactor canvas_controller, experiments_controller 2016-07-28 16:01:53 +02:00
zmagod
d91aa5c60b fixed translation sting 'name' to 'experiment' 2016-07-28 14:57:47 +02:00
zmagod
23a46d5fb3 added translations to experiment create and edit flash messages 2016-07-28 14:52:11 +02:00
zmagod
352944fc33 added new/edit experiment modals 2016-07-28 14:44:44 +02:00
zmagod
9d23cfd940 fixed experiment routes 2016-07-28 11:30:34 +02:00
zmagod
c11932b45b fixed layout 2016-07-28 11:00:56 +02:00
zmagod
d16c0fe706 fixed edit canvas 2016-07-28 10:09:05 +02:00
zmagod
54c4051906 added canvas under experiments 2016-07-28 09:01:44 +02:00
zmagod
a17106b883 added experiments controller and fixed sidebar 2016-07-27 16:18:26 +02:00
Zmago Devetak
c869db2506 Merge pull request #35 from ZmagoD/zd_SCI_40 
Edit canvas controller to work with experiments
 2016-07-27 12:11:19 +02:00
zmagod
485d93f8b9 refactor canvas permissions 2016-07-27 11:35:07 +02:00
zmagod
5c7501a273 added experiments canvas labels in localization file and fixed canvas views 2016-07-26 14:21:59 +02:00
zmagod
0a84ecdfc1 edit canvas controller to work with experiment 2016-07-26 14:02:06 +02:00
Jure Grabnar
3be562bdf6 Add experiment to search results 2016-07-26 12:26:48 +02:00
Luka Murn
076b67620f Migration GitLab -> GitHub 2016-07-21 13:11:15 +02:00
Luka Murn
055298fee8 Initial commit. 2016-02-12 16:52:43 +01:00