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10533 commits 69 branches 179 tags 165 MiB
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2469 commits

Author SHA1 Message Date
Mojca Lorber 8325ed80f0 Add endpoints for lists of projects and experiments with filtering and finish the frontend for quick start create new task on dashboard 2020-03-04 23:26:01 +01:00
aignatov-bio 77d66b65b1 Refactor current task for addons integration 2020-03-04 13:21:52 +01:00
aignatov-bio 30545f5cf4
Merge pull request #2443 from aignatov-bio/ai-sci-4409-fix-visibilty-of-tasks 
Fix task visibility for current task widget [SCI-4409]
 2020-03-03 16:35:22 +01:00
mlorb ba438e7728
Merge branch 'features/dashboard' into ml-sci-4354 2020-03-03 16:29:47 +01:00
Mojca Lorber 4f37260571 Fix controller 2020-03-03 16:17:29 +01:00
aignatov-bio 9fa8818a5d Fix markup 2020-03-03 16:10:52 +01:00
aignatov-bio da4967b3d0 Fix markup 2020-03-03 16:09:19 +01:00
aignatov-bio 7d7cdce91a Add file size limitation to tinyMCE 2020-03-03 15:55:17 +01:00
Oleksii Kriuchykhin 11a5536af5 Improve file upload checks [SCI-4382] 2020-03-03 15:26:40 +01:00
aignatov-bio 3dc94a225d Small visual improvments for current tasks widget 2020-03-03 14:21:16 +01:00
aignatov-bio eb4a783337 Fix task visibility for current task widget 2020-03-03 13:13:46 +01:00
mlorb 4d52fc9b45
Merge branch 'features/dashboard' into ml-sci-4354 2020-03-03 13:00:05 +01:00
Mojca Lorber 52493fd834 Add pagination for current tasks on dashboard 2020-03-03 12:07:21 +01:00
aignatov-bio d9bfd8c28e Add search to current task widget 2020-03-03 09:50:44 +01:00
Oleksii Kriuchykhin a819e1b8f4 Merge branch 'hotfix/1.17.11' into develop 2020-03-02 11:58:25 +01:00
Alex Kriuchykhin 409c4b7f65
Merge pull request #2438 from okriuchykhin/ok_SCI_4356 
Improve loading of tasks statistics for dashboard [SCI-4356]
 2020-02-28 16:38:39 +01:00
Oleksii Kriuchykhin 78ceb41a9e Improve loading of tasks statistics for dashboard [SCI-4356] 2020-02-28 16:17:32 +01:00
aignatov-bio 0ae5e51cb3 Merge branch 'features/dashboard' into ai-sci-4375-end-point-to-task-create 2020-02-28 14:37:27 +01:00
aignatov-bio 8b273acaca Update all sidebars 2020-02-28 14:03:08 +01:00
Miha Mencin 1fd876bb40
Merge pull request #2425 from mlorb/ml-sci-4348 
Dashboard current tasks visual layout and backend [SCI-4348] [SCI-4355]
 2020-02-28 12:11:31 +01:00
Mojca Lorber 3c09923d96 Refactoring current tasks backend 2020-02-28 11:51:08 +01:00
aignatov-bio 9e15d1ea42 Refactor experiment sidebar 2020-02-27 16:04:44 +01:00
Mojca Lorber f29ce66bea Refactor backend, add empty state and fix some small scc changes 2020-02-26 11:07:17 +01:00
aignatov-bio 8e05908753 Small fixes 2020-02-25 17:19:11 +01:00
aignatov-bio 32d6f9a43a Split my_module create service to seperate services 2020-02-25 13:46:44 +01:00
aignatov-bio a28d729aeb Add end point 2020-02-24 17:09:10 +01:00
Oleksii Kriuchykhin 0cb9584a2b Fix empty mime type for ActiveStorage local file service [SCI-4360] 2020-02-24 16:04:35 +01:00
aignatov-bio 0675b137ad Add team and task status for calendars scope 2020-02-22 18:15:18 +01:00
Oleksii Kriuchykhin 63e557ea9e Add global repositories limit [SCI-4383] 2020-02-21 14:40:17 +01:00
Mojca Lorber 9bd2e8bec4 Dashboard current tasks visual layout and backend 2020-02-21 10:41:42 +01:00
aignatov-bio cf4dbd5ff4 Add calendar widget 2020-02-20 17:02:38 +01:00
Oleksii Kriuchykhin 9d0d75acc5 Add API endpoints for new column types [SCI-4276] 2020-02-18 15:13:46 +01:00
aignatov-bio ff45b17b53 Fix localization and small markup fixes 2020-02-17 15:32:43 +01:00
aignatov-bio a438f6b4f0 Finished filters 2020-02-17 10:47:10 +01:00
aignatov-bio 485597a9ef Add front-end part 2020-02-14 12:07:40 +01:00
aignatov-bio 5c0a769f87 General dashboard layout 2020-02-13 13:50:29 +01:00
aignatov-bio 463b99195c Remove shared inventories with view permission from dropdown list 2020-02-12 11:16:55 +01:00
Oleksii Kriuchykhin 5be4ffb139 Fix multiple file result creation [SCI-4346] 2020-02-11 20:08:36 +01:00
Alex Kriuchykhin 9c763f2111 Merge pull request #2383 from okriuchykhin/ok_SCI_4220 
Extend inventory import to support new data types [SCI-4220]
 2020-02-10 11:04:34 +01:00
Oleksii Kriuchykhin 5470bb9b9b Fix file result only name update [SCI-4321] 2020-02-07 15:21:50 +01:00
Mojca Lorber 2727614603 Clean up controllers for manage repository columns 2020-02-04 16:05:16 +01:00
Oleksii Kriuchykhin 632b54cb98 Merge branch 'develop' into ok_SCI_4220 2020-02-03 15:50:06 +01:00
Oleksii Kriuchykhin b0c785f4fb Extend inventory import to support new data types [SCI-4220] 2020-02-03 15:20:01 +01:00
Urban Rotnik 3db48c44f7 Add ordered scope 2020-01-30 13:47:14 +01:00
Urban Rotnik 1bb54d20cf Teams ordering fixed 2020-01-30 13:46:04 +01:00
Miha Mencin 81023f8c69 SCI-4300 sckip permission checking for list 2020-01-27 14:27:46 +01:00
Oleksii Kriuchykhin 8c2b1e5037 Fix global search for repositories and checklists update [SCI-4251] 2020-01-16 15:30:19 +01:00
Miha Mencin b23c874f9e
Merge pull request #2310 from biosistemika/SCI-4199-selected-checklist-is-lost 
Sci 4199 selected checklist is lost
 2020-01-15 15:28:34 +01:00
mlorb e44903bae5
Merge branch 'develop' into ml-sci-4150-v2 2020-01-15 14:47:25 +01:00
Miha Mencin 5bfa5c7939 SCI-4199 disabling delimiter, adding warning 2020-01-15 13:59:28 +01:00
Oleksii Kriuchykhin eed68a2590 Refactor repository cell clonning to support all data types [SCI-4204] 2020-01-14 16:55:10 +01:00
Mojca Lorber 9176301b7b Refactor manage repository columns, move it from page into modal 2020-01-14 11:13:19 +01:00
Oleksii Kriuchykhin 01b8d2226d Optimize repository table counters [SCI-4224] 2020-01-13 16:31:42 +01:00
Oleksii Kriuchykhin 7b82e33eb6 Fix repository filtering and improve speed [SCI-4224] 2020-01-13 16:09:07 +01:00
aignatov-bio bdb970b8d4 Fix flash message for datetime column 2020-01-10 13:22:29 +01:00
Alex Kriuchykhin f1babb2237
Merge pull request #2279 from okriuchykhin/ok_SCI_4000 
Fix sidebar update for inline editing [SCI-4000]
 2020-01-10 10:34:27 +01:00
Alex Kriuchykhin d2e12e0683
Merge pull request #2265 from okriuchykhin/ok_SCI_4146 
Restrict files to only images in RTE fields [SCI-4146]
 2020-01-10 10:34:00 +01:00
Oleksii Kriuchykhin 1624f9d5ab Disable comment edit mode if comment is not editable [SCI-4149] 2020-01-08 12:32:59 +01:00
Oleksii Kriuchykhin d9b9243da7 Merge branch 'develop' into features/new-column-types 2020-01-07 16:03:33 +01:00
Oleksii Kriuchykhin 16b591b110 Fix sidebar update for inline editing [SCI-4000] 2020-01-06 16:07:23 +01:00
aignatov-bio 3bd44dc5ab
Merge pull request #2271 from aignatov-bio/ai-sci-4168-refactor-checklist-model 
Refactor checklist column data structure [SCI-4168]
 2019-12-24 11:12:36 +01:00
Urban Rotnik 400c109592 Refactor StatusesJS for new dropdown 2019-12-23 14:34:11 +01:00
Miha Mencin 882ec711fe
Merge pull request #2276 from biosistemika/master 
Master
 2019-12-20 17:39:46 +01:00
aignatov-bio 54800cb69b Merge branch 'features/new-column-types' into ai-sci-4168-refactor-checklist-model 2019-12-20 15:46:39 +01:00
aignatov-bio 16c4879e56 Merge migrations and update sorting 2019-12-20 15:42:54 +01:00
Oleksii Kriuchykhin b945171f2f Fix creation of new tasks on canvas [SCI-4171] 2019-12-19 15:48:25 +01:00
Urban Rotnik 7153711570 Move delimiter from column to metadata 2019-12-18 10:22:52 +01:00
Miha Mencin b67911c81a Merge branch 'SCI-4058-disable-inventory-delition-for-normal-user' into release/1.17.9 2019-12-17 14:48:50 +01:00
Oleksii Kriuchykhin 403a3e0140 Restrict files to only images in RTE fields [SCI-4146] 2019-12-16 16:05:40 +01:00
Alex Kriuchykhin 792e6f2eb9
Merge pull request #2263 from okriuchykhin/ok_SCI_4142 
Implement SSO with Azure AD [SCI-4142]
 2019-12-12 16:12:40 +01:00
Oleksii Kriuchykhin 0094528a02 Improve connected accounts unlinking [SCI-4142] 2019-12-12 14:57:27 +01:00
aignatov-bio eed56b59aa Fix markup 2019-12-11 15:08:18 +01:00
aignatov-bio 7664f4be78 Add checklist and list edit mode 2019-12-11 14:49:14 +01:00
Oleksii Kriuchykhin 1aa334fdaa Merge branch 'develop' into release-1-17-8 2019-12-11 10:55:00 +01:00
Oleksii Kriuchykhin ff4ef818fb Implement SSO with Azure AD [SCI-4142] 2019-12-10 17:24:53 +01:00
aignatov-bio 7fc9c0d1e4 Adding frontend for checklist edit mode 2019-12-10 15:58:59 +01:00
Urban Rotnik 5055490a23 Refactor asset value methods 2019-12-10 14:29:36 +01:00
Urban Rotnik 82b93bf9a4 Fix failing tests 2019-12-10 14:29:35 +01:00
Urban Rotnik 508a9b4e3e RepositoryRows controller refactor 2019-12-10 14:29:35 +01:00
Urban Rotnik 0c990ef8cf Add functions for creating new cells with values 2019-12-10 14:29:34 +01:00
Mojca Lorber 8503dd7007 Add numeric repository column type 2019-12-09 16:38:21 +01:00
aignatov-bio 09079fbcda Fix naming and tests 2019-12-09 13:48:36 +01:00
aignatov-bio d8676596f1 Add checklists column type 2019-12-09 13:48:36 +01:00
Urban Rotnik 7661a24a44 Remove scope for before_action 2019-12-06 11:15:17 +01:00
Urban Rotnik 2c0a6ed085 Remove current_user vars 2019-12-06 11:12:07 +01:00
Oleksii Kriuchykhin 03667f619f Merge branch 'release-1-17-7' into develop 2019-12-05 13:03:39 +01:00
Urban Rotnik ee5c2ac93d Add edit renderer for Assets 2019-12-04 14:52:52 +01:00
aignatov-bio d5f9604e1c Fix file post process method 2019-12-03 10:17:47 +01:00
Urban Rotnik 3ab1967703 Add Edit renderer for Statuses 2019-12-02 11:03:05 +01:00
Alex Kriuchykhin fbf1a5b6e2
Merge pull request #2239 from okriuchykhin/ok_SCI_4098 
Refactor Azure configuration  and connected accounts [SCI-4098]
 2019-11-29 11:30:33 +01:00
Urban Rotnik 5f2407e3fb Add view renders for DateTime column types 2019-11-29 10:50:14 +01:00
Urban Rotnik 65d8d0e35b DateTime HTML and JS simplified 2019-11-29 10:19:57 +01:00
Urban Rotnik 5ae29d549e Add manage modal for DateTime values 2019-11-29 10:19:55 +01:00
Urban Rotnik fe4aa12ced Add DateTime columns CRUD endpoints 2019-11-29 10:19:14 +01:00
Urban Rotnik dc6cc3bc62 Show after create flash messages 2019-11-29 10:19:12 +01:00
Urban Rotnik b2ce600820 Add delimiter column for repository_column 2019-11-29 10:19:10 +01:00
Urban Rotnik b2b6296cb5 Improve update items action, JS and views 2019-11-29 10:19:10 +01:00
Urban Rotnik 24acf1f84b Fix edit mode for File and Text 2019-11-29 10:19:08 +01:00
Urban Rotnik 1e8261ac2a Update InventoryColumns API for new Status Type 2019-11-29 10:19:07 +01:00
Urban Rotnik 7ab12baef9 Add API endpoint for StatusItems 2019-11-29 10:19:07 +01:00
Mojca Lorber bcb8cc1840 Remove byebug 2019-11-29 10:17:54 +01:00
Mojca Lorber 305104f639 Refactor text inventory type 2019-11-29 10:17:53 +01:00
Urban Rotnik 37b7d5aa64 Use values from extends 2019-11-29 10:17:52 +01:00
Urban Rotnik f645ff52ab Refactor ColumnServices 2019-11-29 10:17:52 +01:00
Urban Rotnik 28d7a4f284 Refactor FileColumnController 2019-11-29 10:17:51 +01:00
Urban Rotnik 1720623665 Refactor RepositoryListColumn controller 2019-11-29 10:17:50 +01:00
Mojca Lorber 482deafdd3 Rename partial 2019-11-29 10:17:49 +01:00
Mojca Lorber fe8829b592 Fix multiple load of modal 2019-11-29 10:17:49 +01:00
Urban Rotnik 5923e8897a Remove commented code 2019-11-29 10:16:46 +01:00
Urban Rotnik 4cb3d1b6f0 Add BaseColumnsController for column_types controllers 2019-11-29 10:16:45 +01:00
Urban Rotnik 14b43d516e Add UpdateStatusColumnService service 2019-11-29 10:16:45 +01:00
Urban Rotnik 5930bdd794 Add StatusColumnsController 2019-11-29 10:16:44 +01:00
Oleksii Kriuchykhin 6c7f45fc20 Add simplified view for sign-in form [SCI-4098] 2019-11-28 17:00:43 +01:00
Miha Mencin 13191f1a72
Merge pull request #2223 from biosistemika/SCI-4058-disable-inventory-delition-for-normal-user 
Sci 4058 disable inventory delition for normal user
 2019-11-28 14:31:32 +01:00
Oleksii Kriuchykhin f5abb7c767 Add connected accounts section to settings [SCI-4106] 2019-11-27 23:16:25 +01:00
aignatov-bio 68284c10da Add task description and task protocol description activities 2019-11-27 14:37:53 +01:00
Oleksii Kriuchykhin 6b20a10473 Refactor Azure configuration [SCI-4098] 2019-11-26 15:09:40 +01:00
Alex Kriuchykhin 111056a032
Merge pull request #2224 from okriuchykhin/ok_SCI_4112 
Fix adding experiment contents to report [SCI-4112]
 2019-11-26 09:50:28 +01:00
Miha Mencin a328c4ad56 fix CR comments 2019-11-25 17:40:29 +01:00
aignatov-bio d732b2f1a6
Merge pull request #2228 from aignatov-bio/ai-sci-4090-fix-task-tags 
Add strict order to module tags in modal [SCI-4090]
 2019-11-25 13:55:33 +01:00
Miha Mencin e65e344c39 fix styling 2019-11-25 10:45:21 +01:00
aignatov-bio 5100ab4d08 Add strict order to module tags in modal 2019-11-25 10:15:06 +01:00
Miha Mencin bd34435b39 fixing style issues 2019-11-25 08:44:33 +01:00
aignatov-bio 7fa753ca81 Fix name update and path to team 2019-11-23 23:20:38 +01:00
Oleksii Kriuchykhin 8f94c85b7a Fix adding experimaent contents to report [SCI-4112] 2019-11-22 14:57:59 +01:00
Miha Mencin 1bf6663196 check the permissions in before action 2019-11-22 13:23:02 +01:00
aignatov-bio 2e30f50ae8
Merge pull request #2221 from aignatov-bio/ai-sci-3976-add-autosave-other-fields 
Add autosave for protocol keywords, user preferences and due date [SCI-3976]
 2019-11-21 13:13:10 +01:00
aignatov-bio 0b04ca4012 Fix markup 2019-11-21 12:19:47 +01:00
Miha Mencin 04a6645cfc Separate view/edit/modify permissions SCI-4058 2019-11-20 17:12:47 +01:00
aignatov-bio 56ae32323c Add autosave for protocol keywords and user preferences 2019-11-20 14:57:53 +01:00
Oleksii Kriuchykhin 46ee43ea8b Improve handling of file links for local storage [SCI-4071] 2019-11-19 15:35:31 +01:00
aignatov-bio 264493a322 Finish removing Select2 library 2019-11-18 13:59:55 +01:00
aignatov-bio e7ad7ae969 New tags drop down 2019-11-18 13:59:55 +01:00
Anton Ignatov 17e457c686 Finished global activities refactoring 2019-11-18 13:59:54 +01:00
Anton Ignatov fc70ce24f8 Refactor side filters for global activities 2019-11-18 13:59:54 +01:00
Anton Ignatov 7b855f54ac Finish main part of selectors 2019-11-18 13:59:54 +01:00
Urban Rotnik 5e97116c5a Update results params 2019-11-18 11:11:39 +01:00
Urban Rotnik 8b5e346770 Remove file deletion manually 2019-11-18 11:11:39 +01:00
Urban Rotnik cc9d987321 Add update result(file) and create result(file) API endpoint 2019-11-18 11:11:38 +01:00
Urban Rotnik 060125a1c4 Add file size validation 2019-11-18 11:11:38 +01:00
Urban Rotnik 1be88baab1 Add API endpoint for Attachments resource 2019-11-18 11:11:38 +01:00
Urban Rotnik e7083e188c Add API endpoint for Step resource 
[SCI-3835]
 2019-11-18 11:11:37 +01:00
Urban Rotnik 24033bec7a Add API endpoint for Task creation 2019-11-18 11:11:37 +01:00
aignatov-bio 3eb6f5695b
Merge pull request #2207 from aignatov-bio/mlorb-ml-sci-4004 
Add auto-save feature to text fields [SCI-4004]
 2019-11-18 09:11:10 +01:00
aignatov-bio 1488f75e26 Add activities 2019-11-13 13:57:04 +01:00
aignatov-bio a9690482d1 Add autosave feature to text fields 2019-11-12 11:26:18 +01:00
Oleksii Kriuchykhin b646295698 Fix service_url for local storage [SCI-4057] 2019-11-06 15:21:56 +01:00
Oleksii Kriuchykhin ab691efdb2 Fix LinkedIn sign-up [SCI-4047] 2019-10-29 16:20:19 +01:00
Alex Kriuchykhin 5524598d53
Merge pull request #2172 from biosistemika/release_1_17_3 
Merge release 1.17.3 to master
 2019-10-22 12:45:02 +02:00
Oleksii Kriuchykhin 53402c9ce1 Fix images in reports, impove speed of report generation [SCI-3990][SCI-3993] 2019-10-17 13:30:14 +02:00
Oleksii Kriuchykhin f3a6c18a84 Improve permission checking for reports [SCI-3991] 2019-10-14 14:50:05 +02:00
aignatov-bio 54627faeb3 Fix tests 2019-10-11 11:46:51 +02:00
aignatov-bio 521a367960 Add predefined avatars 2019-10-11 11:46:51 +02:00
Alex Kriuchykhin f6da6814b8
Merge pull request #2154 from okriuchykhin/ok_SCI_3977 
Generate previews for newly created office files once asset is saved [SCI-3977]
 2019-10-10 15:43:02 +02:00
Oleksii Kriuchykhin 07b037f05b Generate previews for newly created office files once asset is saved [SCI-3977] 2019-10-10 15:40:50 +02:00
Alex Kriuchykhin 48171f7e02
Merge pull request #2153 from okriuchykhin/ok_SCI_3977 
Fix previews for newly created office files [SCI-3977]
 2019-10-10 15:11:24 +02:00
Oleksii Kriuchykhin 0b4f72e517 Fix previews for newly created office files [SCI-3977] 2019-10-10 14:25:19 +02:00
aignatov-bio 9d59d56818 Generate all preview for assets at same time 2019-10-10 14:17:02 +02:00
Miha Mencin e2b5989c14
Revert "Handle missing experiment previews [SCI-3949]" 2019-10-09 16:42:15 +02:00
Alex Kriuchykhin 71aa8e646e
Merge pull request #2147 from okriuchykhin/ok_SCI_3949 
Handle missing experiment previews [SCI-3949]
 2019-10-09 16:27:16 +02:00
Oleksii Kriuchykhin 00921a5f6a Hadle missing experiment previews [SCI-3949] 2019-10-09 16:24:21 +02:00
Oleksii Kriuchykhin 3d9c2282f3 Implement JPEG quality extraction for ActiveStorage [SCI-3959] 2019-10-08 10:42:55 +02:00
Urban Rotnik c296760be8
Merge pull request #2125 from urbanrotnik/ur-sci-3962-step-is-not-saved-after-removing-file 
Add team_id when asset is creating [SCI-3962]
 2019-10-04 14:46:18 +02:00
Alex Kriuchykhin 076d61d4d0
Merge pull request #2116 from okriuchykhin/ok_SCI_3908 
Remove Paperclip from the codebase [SCI-3908]
 2019-10-04 14:45:42 +02:00
Urban Rotnik 8f0c3bd2ce Add team_id when asset is creating 2019-10-04 14:24:19 +02:00
Oleksii Kriuchykhin 9d2ac4179e Fix failing tests [SCI-3908] 2019-10-04 13:02:18 +02:00
Urban Rotnik 09e6545f30
Merge pull request #2115 from urbanrotnik/ur-sci-3947-local-storage 
Fix for disk storage [SCI-3947]
 2019-10-03 16:28:09 +02:00
aignatov-bio a31c5ea1f5 Fix marvin JS preview 2019-10-03 11:54:26 +02:00
Urban Rotnik 9c88327a16 Rename ActiveStorage base controller 2019-10-03 11:00:59 +02:00
Urban Rotnik e2a779ccfe Activestorage fix for disk storage 
[SCI-3947]
 2019-10-02 14:01:38 +02:00
Oleksii Kriuchykhin dd7f2fe095 Fix large preview for documents [SCI-3938] 2019-10-01 16:14:28 +02:00
Oleksii Kriuchykhin 584f2d07c0 Fix file handling in protocol import/copying [SCI-3935][SCI-3926][SCI-3934] 2019-10-01 13:06:01 +02:00
Anton Ignatov 33497d11a3 Merge branch 'activestorage_migration' 2019-10-01 10:36:05 +02:00
Alex Kriuchykhin 53caaf647b
Merge pull request #2080 from okriuchykhin/ok_SCI_3891 
Move file preview generation to delayed job [SCI-3891]
 2019-09-27 10:50:21 +02:00
Anton Ignatov 93363da4e5 Fix preview for result 2019-09-26 16:49:56 +02:00
Oleksii Kriuchykhin aabeeec95a Move file preview generation to delayed job [SCI-3891] 2019-09-23 21:07:03 +02:00
Anton Ignatov 09e3b7c80b Fix repository row import/export 2019-09-23 13:33:02 +02:00
Jure Grabnar 8780e5183b Remove CSRF check in WopiController 2019-09-19 15:55:29 +02:00
Jure Grabnar cc561d8ee5 Change wopi_controller using Paperclip for reading 2019-09-19 15:03:13 +02:00
aignatov-bio 11f6517d0a
Fix duplicate marvinjs save (#2057) 2019-09-18 11:18:44 +02:00
Mojca Lorber 47ccf38662 Redesign of sorting button for projects/experiments cards 2019-09-16 14:43:12 +02:00
Oleksii Kriuchykhin 3509543e7b Merge branch 'master' into ok_SCI_3881 2019-09-16 11:56:49 +02:00
Oleksii Kriuchykhin c068901b00 Upgrade Rails to 6.0 [SCI-3745] 2019-09-12 17:24:08 +02:00
mlorb cf8c98dfa3
Merge pull request #2042 from biosistemika/hotfix-september 
Hotfix september
 2019-09-10 13:53:28 +02:00
Mojca Lorber e8f24b18e2 Fix missing icon on shared inventories in global search 2019-09-10 11:20:18 +02:00
Oleksii Kriuchykhin 265047caf3 Improve behaviour of inventory items export modal [SCI-3815] 2019-09-09 10:38:47 +02:00
Miha Mencin d522b3807a codestyle improvements 2019-09-06 14:59:30 +02:00
Miha Mencin 7fc5035d2d PR fixes, codestyle fixes 2019-09-06 13:47:06 +02:00
Miha Mencin 2486bd0077 SCI3818-unshared-inventory-screen 2019-09-05 14:03:08 +02:00
Mojca Lorber a312c0c4b8 fix bug on api endpoint when creating result 2019-09-04 13:41:06 +02:00
mlorb ba5bebedb2 change inlane editing css, add shared inventory subtitle and add tooltips to shared inventories icons (#2022) 2019-09-02 10:30:29 +02:00
Oleksii Kriuchykhin 267c53c2d2 Refactor inventory sharing logic [SCI-3803] 2019-08-29 17:21:49 +02:00
aignatov-bio d3ccdbd83e
Create copy permission (#2017) 2019-08-29 13:39:22 +02:00
aignatov-bio 96e132c62e
Hide share button for users with one team (#2005) 2019-08-23 11:29:03 +02:00
aignatov-bio 5515bac773
Add assigned items from shared inventories to report (#2002) 2019-08-23 11:28:09 +02:00
Luka Murn 5d3a0d7eea
Merge pull request #2003 from Ducz0r/lm-remove-legacy-projects-views 
Remove legacy projects archive HTML views
 2019-08-21 17:08:27 +02:00
Luka Murn 701bdbd294 Remove archive controller action 2019-08-21 16:01:12 +02:00
aignatov-bio d70b7e2272
Make share status icon dynamic (#2007) 2019-08-21 15:32:57 +02:00
aignatov-bio 5e3f1d59f5
Fix inventory rows import (#1997) 2019-08-21 15:32:45 +02:00
Oleksii Kriuchykhin 3918c893db Fix new office file creation [SCI-3778] 2019-08-21 13:26:11 +02:00
Luka Murn 084cdcdd6b Remove old archive endpoint, controller logic 2019-08-21 13:17:19 +02:00
Anton Ignatov ed8ef7aa8f Fix permission check; 2019-08-20 16:07:22 +02:00
Luka Murn ebda2c832a
Merge pull request #1995 from biosistemika/release-1.16.8 
Merge release-1.16.8 into master
 2019-08-19 15:08:33 +02:00
aignatov-bio b6661682ad
Fix shared inventory in task dropdown (#1993) 2019-08-19 13:56:02 +02:00
aignatov-bio 2cf7f52f15
Add inline editing for inventories [SCI-3763] (#1991) 
* Add inline editing for inventories

* Remove old locals

* Markup fix
 2019-08-19 13:30:56 +02:00
aignatov-bio d741e52427
Fix global search for inventories (#1988) 2019-08-19 09:23:59 +02:00
Anton Ignatov d1e1da8580 Fix permission check for invite users 2019-08-14 14:47:02 +02:00
Urban Rotnik 89f289660b Add share_with_all feature to service, add new activities 2019-08-14 11:03:15 +02:00
Alex Kriuchykhin 960e69eaa8 Fix wopi file download URL [SCI-3757] (#1975) 2019-08-14 09:06:00 +02:00
aignatov-bio 737f9e572c
Replace marvinJS logo and fix some merge issues [SCI-3731] (#1976) 
* Replace marvinJS logo and fix some merge issues

* Fix tests
 2019-08-13 11:04:19 +02:00
Urban Rotnik dc4751e49a Update scope 'accessible_by_teams' and fix load_vars method in controllers 2019-08-12 10:55:30 +02:00
Oleksii Kriuchykhin 32054c5516 Handle situation for assets without blob in list sorting [SCI-3757] 2019-08-09 15:17:19 +02:00
Oleksii Kriuchykhin c352a73d79 ActiveStorage fixies after latest master merge [SCI-3757] 2019-08-09 14:56:00 +02:00
Urban Rotnik 7719b825e3 Update wording for sharing activities, rename button, add view-only paragraph 2019-08-09 14:15:51 +02:00
Urban Rotnik 32783576c1 Add controller action 'multiple_update' 
Add controller action, add update permission activity, add JS for handling ajax req
 2019-08-09 14:15:50 +02:00
Urban Rotnik 2648521924 Invite modal with form 2019-08-09 14:15:49 +02:00
Mojca Lorber 4c7c7ccdf1 Add ability to browse through shared inventories to smart annotations 2019-08-09 14:13:03 +02:00
Mojca Lorber 7d4941015f Update global search, so it will be able to search through shared inventories 2019-08-09 14:13:01 +02:00
Urban Rotnik 171cdb319b Add ShareInventory activities 2019-08-09 14:13:01 +02:00
Mojca Lorber 7e9be932f3 Make scope for repositories accessible by teams and simplify read permission 2019-08-09 14:13:00 +02:00
Mojca Lorber 15432ac851 Make changes to inventory list in navigation based on new mockup 2019-08-09 14:13:00 +02:00
Mojca Lorber cac7dab440 Show shared inventories in left navigation and fix read repository permission 2019-08-09 14:13:00 +02:00
Urban Rotnik 5456c1e38a Add basic controller for TeamRepositories 2019-08-09 14:12:59 +02:00
Urban Rotnik 077369d960 Update permissions for Repositories 2019-08-09 14:12:59 +02:00
aignatov-bio 6e5f078dea
Add activities for marvinJS [SCI-3630] (#1950) 
* Add marvinJs activities to step and results

* Add activities for TinyMCE marvinJS assets

* Fix markup
 2019-08-09 09:47:07 +02:00
Oleksii Kriuchykhin 973efa55e1 Merge branch 'master' into ok_SCI_3678 2019-08-08 11:17:07 +02:00
Oleksii Kriuchykhin b4f632dba8 Remove dowload endpoint from assets controller [SCI-3680] 2019-08-07 15:21:41 +02:00
Oleksii Kriuchykhin d942788581 Implement read permissions checks for ActiveStorage controllers [SCI-3680] 2019-08-07 15:21:41 +02:00
Alex Kriuchykhin 328f8dd8a0
Merge pull request #1966 from okriuchykhin/ok_SCI_3681 
Enforce file size limits for direct uploads on S3 [SCI-3681]
 2019-08-07 10:49:05 +02:00
aignatov-bio aa5061a1af
Add custom context menu to TinyMCE images [SCI-3582] (#1944) 
* Add custom context menu to TinyMCE images

* Fix permission check for unsaved objects

* Fix markup
 2019-08-07 10:28:42 +02:00
Oleksii Kriuchykhin 973fc775c0 Enforce file size limits for direct uploads on S3 [SCI-3681] 2019-08-06 17:09:00 +02:00
Oleksii Kriuchykhin eaf9d59819 Merge branch 'activestorage_migration' into ok_SCI_3679 2019-08-06 15:27:31 +02:00
Jure Grabnar bbdc5ce6c3 Remove couple of Samples related logic/comments 2019-08-05 14:09:13 +02:00
Luka Murn 83bb89fdf5 Cherry-picked commit from ZZ (and LM)'s various changes 2019-07-26 10:13:14 +02:00
Oleksii Kriuchykhin 5e65b07bdc Implement DirectUpload for Steps, Results and Inventories [SCI-3679] 2019-07-25 18:00:24 +02:00
Urban Rotnik 1b9db2f61e Fix for file annotating on Safari 2019-07-24 14:16:29 +02:00
Anton Ignatov 0702dacc5b Security fixes 2019-07-19 14:10:38 +02:00
Anton Ignatov ad7130d3b2 Simplify TinyMCE assets for MarvinJS 2019-07-19 09:27:03 +02:00
Anton Ignatov d79fec3345 Move TinyMCE logic to correspond controller 2019-07-16 15:51:44 +02:00
Anton Ignatov 1e8663548e Add MarvinJS assets to TinyMCE 2019-07-16 13:40:54 +02:00
Anton Ignatov 3339c1fbbf Add MarvinJS to Result and TinyMce MarvinJS refactor 2019-07-15 17:17:14 +02:00
Alex Kriuchykhin 313d2d27b9
Update repository_rows_controller.rb 2019-07-12 17:03:09 +02:00
Oleksii Kriuchykhin 1c235aafe5 Improve permissions checks for reports [SCI-3700] 2019-07-12 16:44:15 +02:00
mlorb 5bc8eb7392
Merge pull request #1921 from mlorb/ml-sci-3641 
Fix page redirect and add success flash msg after protocols.io import [SCI-3641]
 2019-07-12 15:52:40 +02:00
Anton Ignatov ba1d6d45ca Fix merging issues 2019-07-12 15:47:15 +02:00
Anton Ignatov ffd415d409 Inital refactor for Assets model 2019-07-12 15:02:06 +02:00
Oleksii Kriuchykhin 6166a0dbb0 Fix file result update method [SCI-3695] 2019-07-12 14:42:04 +02:00
Anton Ignatov 57a273d5d0 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 11:34:41 +02:00
Mojca Lorber f8afc92606 Fix page redirect and add success flash msg after protocols.io import action 2019-07-11 09:50:39 +02:00
Jure Grabnar 5eb197127f Fix relative links in protocolsio iframe 
Closes SCI-3660
 2019-07-10 19:20:40 +02:00
Oleksii Kriuchykhin a1941a21dc Futher refactoring of old Paperclip methods [SCI-3539] 2019-07-09 10:28:15 +02:00
mlorb 7272d838b6
Merge pull request #1875 from mlorb/ml-sci-3618 
Remove unassign_user_from_project notification…[SCI-3618]
 2019-07-08 15:23:06 +02:00
Jure Grabnar bdd1ca2a65
Merge pull request #1908 from jbargu/jg_sci_3587 
[SCI-3587] Endless spinner at file preview
 2019-07-08 13:06:39 +02:00
Jure Grabnar 0ee0b1c834 Fix file preview not showing in modal when processing is done 
Close SCI-3587
 2019-07-08 12:45:22 +02:00
Oleksii Kriuchykhin 9d926dc956 Refactor TinyMce assets, user avatars, zip files [SCI-3539] 2019-07-05 16:56:05 +02:00
Jure Grabnar dc7fee51fa Add Show more protocols functionality to external protocols 
Closes SCI-3646
 2019-07-04 15:35:18 +02:00
Oleksii Kriuchykhin c0c8e0e1a3 Refactor Experiment workflow images [SCI-3539] 2019-07-04 09:33:12 +02:00
Jure Grabnar 20134c9f8a
Features/protocolsio integration (#1893) 
Features/protocolsio integration
 2019-07-03 17:32:20 +02:00
aignatov-bio 09dacf3be2
Fix infinite update for image annotation (#1889) 2019-07-03 15:35:49 +02:00
Miha Mencin 37cc526ac9 fix CR comments 2019-07-03 10:22:59 +02:00
Miha Mencin 74b4e0d774 SCI-3644 hide the import button and show it only on hover & when appropriate user 2019-07-02 18:24:07 +02:00
Oleksii Kriuchykhin 4ea6b56582 Fix Step and Result file previews [SCI-3539] 2019-07-01 23:30:20 +02:00
Mojca Lorber 41935a9471 Remove unassign_user_from_project notification and change code to use helper method for assignment notification generation 2019-07-01 13:44:27 +02:00
Anton Ignatov c9ae9f056e Merge branch 'okriuchykhin-ok_SCI_3539' into features/marvinjs-integration 2019-07-01 10:44:29 +02:00
aignatov-bio 2793777463
Features/docx report (#1873) 
* Initial setup for docx report

* Add render for project, experiment, my_module

* Implement converter for RTE fields

* Add all report elements

* fix markup

* Change headers, remove empty blocks, refactored repository draw

* Add smart annotations support

* Fix justify fields

* Prepare for addons integration

* Fix markup

* Add comments to GemFile

* Fix TinyMCE error

* Change UI for new report download selector

* Fix file error in inventory cell for docx

* Fix i18n object for header
 2019-07-01 10:14:16 +02:00
Anton Ignatov 390002f40f Merge branch 'ok_SCI_3539' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_3539 2019-07-01 10:12:26 +02:00
Anton Ignatov 6be227b2d3 Merge branch 'master' of https://github.com/biosistemika/scinote-web into features/marvinjs-integration 2019-06-28 10:47:38 +02:00
Oleksii Kriuchykhin 5acb16d43e Update Asset helper methods [SCI-3539] 2019-06-28 08:17:09 +02:00
Jure Grabnar bc4b07cc0f Refactor hardcoded protocol_source in SearchService 2019-06-28 02:26:31 +02:00
Jure Grabnar d3afcbed50 Style card view on external protocols 
Closes SCI-3535
 2019-06-28 00:43:05 +02:00
Urban Rotnik 9cb4454537 New implementation for attachments creation 2019-06-27 17:02:06 +02:00
Urban Rotnik 1fd0ca6795 Add steps preview 2019-06-27 16:46:02 +02:00
Urban Rotnik 2761079479 Add modal for import 2019-06-27 16:46:02 +02:00
Jure Grabnar 86bc69e510 Simplify V3 errors structure 2019-06-27 09:42:21 +02:00
Mojca Lorber 9fd83d54a0 Put network error handeling into api and refactor errors 2019-06-26 14:04:03 +02:00
aignatov-bio 83bc9eb22f
Merge pull request #1839 from aignatov-bio/ai-sci-3369-activity-for-edited-image-annotation 
Adding new activities for image editing [SCI-3369]
 2019-06-24 10:31:39 +02:00
Anton Ignatov 7e5c39d3e4 Merge branch 'master' into features/marvinjs-integration 2019-06-21 14:51:45 +02:00
Alex Kriuchykhin db7c6435b3
Merge pull request #1851 from okriuchykhin/ok_SCI_3436 
Implement saving of attachments ordering on steps [SCI-3436]
 2019-06-20 11:31:15 +02:00
Anton Ignatov 3069ec8dd2 Add check for edit permission 2019-06-20 09:43:23 +02:00
Anton Ignatov a843a016a0 Fix markup and naming 2019-06-19 15:19:47 +02:00
Mojca Lorber ebcaa4b014 Implement protocols.io error handling for api client and normalizer 2019-06-18 14:01:57 +02:00
Urban Rotnik 88d96c0938 Use service in controller 2019-06-17 12:24:15 +02:00
Jure Grabnar 4f6397b5b9 Add form to external_sources#new action 
Closes SCI-3532
 2019-06-17 12:24:15 +02:00
Jure Grabnar c8b8bcffdb Add external_protocols#show action 2019-06-17 12:24:14 +02:00
Jure Grabnar f7c6f78925 Add external_protocols#index action 2019-06-17 12:24:14 +02:00
Jure Grabnar 2a61075156 Add ExternalProtocols#create action and tests 2019-06-17 12:24:14 +02:00
Jure Grabnar 9baa66c998 Refactor OnlineSources -> ExternalProtocols 2019-06-17 12:24:13 +02:00
Jure Grabnar eb0d677a36 Refactor pio_protocol -> built_protocol 2019-06-17 12:24:13 +02:00
Jure Grabnar 94e7fe1e6c OnlineSourcesController skeleton and #new action tested 2019-06-17 12:24:13 +02:00
Anton Ignatov f480c0eb8d Adding new activtiies for image editing 2019-06-14 16:15:30 +02:00
aignatov-bio 52a2f5cd0e
Add recent protocols dropdown to task page [SCI-3417] (#1800) 
* Add recent protocols dropdown to task page
 2019-06-13 15:47:29 +02:00
Alex Kriuchykhin bc94771828
Merge pull request #1791 from okriuchykhin/ok_SCI_3461 
Refactor the async thumbnail reloading (spinner) [SCI-3461]
 2019-06-12 15:35:15 +02:00
Alex Kriuchykhin 4f851b0995
Merge pull request #1816 from aignatov-bio/ai-sci-3525-fix-nil-error-in-module-tag-controller 
Fix nil issue in tags_my_module controller [SCI-3525]
 2019-06-12 13:11:40 +02:00
Oleksii Kriuchykhin a855eade4c Merge branch 'master' into ok_SCI_3461 2019-06-11 17:48:02 +02:00
Oleksii Kriuchykhin 6e1a7a3392 Implement saving of attachments ordering on steps [SCI-3436] 2019-06-11 10:08:33 +02:00
Alex Kriuchykhin 36255f82ed
Merge pull request #1817 from okriuchykhin/ok_SCI_3522 
Add system notifications service to health check endpoint [SCI-3522]
 2019-06-04 14:41:43 +02:00
aignatov-bio d207cf5dce
Refactored comments over SciNote [SCI-3505] (#1808) 
* Preparing helpers for comments

* Refactored comments over scinote

* Update events
 2019-06-04 14:40:21 +02:00
Anton Ignatov 5df55d39be Fix nil issue in module controller 2019-05-31 16:02:21 +02:00
Oleksii Kriuchykhin 552f69b9b1 Add system notifications service to health check endpoint [SCI-3522] 2019-05-31 15:52:47 +02:00
Anton Ignatov c9a29b12ba Merge branch 'master' into features/marvinjs-integration 2019-05-31 10:27:14 +02:00
aignatov-bio 94b220172d
Fix empty result name issue (#1812) 2019-05-31 09:48:58 +02:00
Oleksii Kriuchykhin 5a9640c5d1 Add aditional checks for inventory state objects [SCI-3412] 2019-05-27 17:32:21 +02:00
aignatov-bio 8f2d873130
Fix error when editing office document (#1793) 2019-05-22 10:34:16 +02:00
Oleksii Kriuchykhin 84a2ad4487 Refactor the async thumbnail reloading (spinner) [SCI-3461] 2019-05-21 17:29:33 +02:00
aignatov-bio 59e824ef9e
Fix nil handling in different places [SCI-2840] (#1777) 
* Fix nil handling in different places
 2019-05-21 15:53:34 +02:00
mlorb be0393e642
Merge pull request #1785 from biosistemika/lm-ml-sci-3193 
Update protocol status bar upon protocol changing [SCI-3193]
 2019-05-21 15:28:58 +02:00
aignatov-bio 2de2ead723
Refactor avatar image appearance across Scinote [SCI-3482] (#1787) 
* Refactor avatar appearance across Scinote
 2019-05-21 15:19:44 +02:00
Mojca Lorber b479a6a145 Cover all use cases for updating protocol status bar 2019-05-20 16:09:43 +02:00
Oleksii Kriuchykhin 1128fedc51 Refactor title inline editing permission checking [SCI-3471] 2019-05-20 13:13:31 +02:00
Alex Kriuchykhin df59c54bd4
Merge pull request #1776 from okriuchykhin/ok_SCI_3477 
Fix protocol metadata editing in repository [SCI-3477]
 2019-05-17 09:42:13 +02:00
Oleksii Kriuchykhin 488fc99dae Fix protocol metadata editing in repository [SCI-3477] 2019-05-16 17:11:17 +02:00
Anton Ignatov 259b75a6ba Merge branch 'master' into features/marvinjs-integration 2019-05-16 09:28:48 +02:00
aignatov-bio 24e30867da
Add smart annotation to comments [SCI-3458] (#1768) 
* Add smart annotation to comments
 2019-05-15 14:59:15 +02:00
Oleksii Kriuchykhin 5b0e9872c3 Improve handling of CSRF token errors [SCI-2841] 2019-05-14 17:02:56 +02:00
Alex Kriuchykhin e544edeaf7
Merge pull request #1758 from okriuchykhin/ok_SCI_3381 
Fix handling of processing step attachments [SCI-3381]
 2019-05-14 09:26:30 +02:00
Oleksii Kriuchykhin 4b1c4bd140 Fix handling of proccessing step attachments [SCI-3381] 2019-05-13 17:12:06 +02:00
Luka Murn bd9ffe4bd2 Refactor WOPI filename length validation onto the model 2019-05-13 15:41:39 +02:00
Anton Ignatov 652fba0e23 Merge branch 'master-with-note-section' 2019-05-13 11:08:11 +02:00
Miha Mencin 5ff344c208
Merge pull request #1746 from biosistemika/lm-sci-3426 
Changes to create new office file button [SCI-3426]
 2019-05-13 10:55:58 +02:00
aignatov-bio d3aa6371cd
Fix report saving [SCI-3443] (#1753) 
* Fix report saving

* Fix the report saving by using the reports' structures

* Remove uneccesary yarn.lock (mistake)
 2019-05-13 10:55:08 +02:00
aignatov-bio da5b24ef57
Fix attachment appearence after update (#1745) 2019-05-13 10:54:16 +02:00
Anton Ignatov e5b4adcc25 Merge branch 'master-with-note-section' into features/marvinjs-integration 2019-05-11 20:51:01 +02:00
Luka Murn 890df8803e Add file name validation to create new Office file modal window 2019-05-10 18:19:32 +02:00
Luka Murn 5135922254 Move the WOPI controls partial to /wopi folder, fix typo 2019-05-10 16:51:54 +02:00
Luka Murn b78caef915 Fix the file preview modal so it supports WOPI_ENABLED == false 2019-05-10 16:41:11 +02:00
Alex Kriuchykhin 2a7f70929a
Merge pull request #1717 from okriuchykhin/ok_SCI_3368 
Improve clean up of Export All files [SCI-3368]
 2019-05-09 13:37:56 +02:00
Anton Ignatov 2e6bab4638 Fix smart anottation to protocols in repository 2019-05-09 09:40:40 +02:00
Oleksii Kriuchykhin 40550f92c9 Improve HTML data escaping in JSON endpoints [SCI-3403] 2019-05-08 17:38:24 +02:00
Anton Ignatov 565a4959b4 small fixes and improvments 2019-05-03 15:24:28 +02:00
Anton Ignatov 88e67a16c2 Merge branch 'master-with-note-section' into feature/marvinjs-integration 2019-05-02 16:16:03 +02:00
Anton Ignatov fef691d30f Add error handling and secutiry checks 2019-05-02 16:12:25 +02:00
Anton Ignatov f73dd38780 Add image editor to tinymce drawings 2019-04-30 18:32:59 +02:00
Anton Ignatov 4d0d5aa014 Adding team sketches selector 2019-04-30 17:32:55 +02:00
Anton Ignatov 7c55fcf0cf Merge branch 'master' into master-with-note-section 2019-04-30 12:07:59 +02:00
aignatov-bio 687b53feb1
Add new tag activtiies [SCI-3341] (#1712) 
* Add new tag activtiies
 2019-04-30 10:23:09 +02:00
Jure Grabnar b37349624a
Merge pull request #1714 from biosistemika/jg_sci_3380 
Add editnew action for editing new office files [SCI-3380]
 2019-04-30 09:57:07 +02:00
Jure Grabnar ed003aca13 Add editnew action for editing new office files 
Closes SCI-3380
 2019-04-30 08:19:52 +02:00
Oleksii Kriuchykhin 1b792e2b7e Improve clean up of Export All files [SCI-3368] 2019-04-30 00:43:34 +02:00
Anton Ignatov f80d881847 Fix markup 2019-04-28 19:11:41 +02:00
Anton Ignatov 260810fff8 Add editing mode for tinymce images 2019-04-28 16:16:31 +02:00
Anton Ignatov 193edfbc35 Add marvin js support to TinyMCE 2019-04-27 22:54:59 +02:00
Anton Ignatov 54731856f0 Finish step chemical attachments 2019-04-27 19:08:40 +02:00
Anton Ignatov cf4ff41ec6 Add delete feature 2019-04-27 13:51:35 +02:00
Anton Ignatov fe620c4a63 Add marvin model and controller 2019-04-26 22:59:38 +02:00
Mojca Lorber 9e04eb8ea1 Fixes upon Urbans request 2019-04-26 11:34:53 +02:00
aignatov-bio 1a860037f7
Update reports for new RTE [SCI-3263] (#1691) 
* Update reports for new RTE
 2019-04-25 16:16:43 +02:00
Urban Rotnik 0cf688be39
Merge pull request #1692 from urbanrotnik/ur-sci-3135-comments-section-changes 
Comments section changes [SCI-3135]
 2019-04-25 14:18:05 +02:00
aignatov-bio 84993ea3ef
Update protocol repository for new description format [SCI-3371] (#1689) 
* Update protocol repository for new description format

* move image clone method to concerns
 2019-04-24 13:34:56 +02:00
Urban Rotnik 774521df7a Changes to comments section in Task Steps 2019-04-23 15:02:58 +02:00
Urban Rotnik 11a7a975af Merge branch 'features/scinote-improvements' into master-with-note-section 2019-04-23 14:50:03 +02:00
Anton Ignatov 7d60eb5572 Fix migration issues 2019-04-23 11:11:22 +02:00
Anton Ignatov aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
aignatov-bio 6b45dcd475
Update eln export for new tinyMCE image format (#1680) 2019-04-19 14:44:40 +02:00
aignatov-bio a75c4c2f91
Update Result API for new tiny mce image format (#1674) 2019-04-19 14:44:16 +02:00
Mojca Lorber b00cf07684 Add activity for importing inventory items 2019-04-18 15:18:10 +02:00
Oleksii Kriuchykhin f9832013b0 Improve experiment preview image generation [SCI-3177] 2019-04-17 12:06:46 +02:00
Urban Rotnik 782d1dfc2d
Merge pull request #1677 from urbanrotnik/ur-sci-3345-export-all-counter-fix-2 
Exports left after export [SCI-3345]
 2019-04-16 14:44:48 +02:00
Urban Rotnik 4f8faba84e Exports left after export fix 2019-04-16 14:21:47 +02:00
Urban Rotnik 0ba0dccd57
Merge pull request #1675 from urbanrotnik/ur-sci-3345-export-all-counter-fix 
Fix for exports_left, fix for some edge cases [SCI-3345]
 2019-04-16 10:32:31 +02:00
Urban Rotnik 22af36dd2d Fix for exports_left, fix for some edge cases 2019-04-16 09:59:02 +02:00
Urban Rotnik 7eeba0e57e
Merge pull request #1670 from urbanrotnik/ur-sci-3343-dynamic-filtering-default-fix 
Dynamic filtering default fix [SCI-3343]
 2019-04-15 11:40:16 +02:00
Urban Rotnik 83f2a5c961 Dynamic filtering default fix 2019-04-15 11:20:43 +02:00
Alex Kriuchykhin a61d637e6d
Merge pull request #1669 from okriuchykhin/ok_SCI_3340 
Fix crash when no activities present [SCI-3340]
 2019-04-15 11:13:25 +02:00
Oleksii Kriuchykhin a43e42fdb3 Fix crash when no activities present [SCI-3340] 2019-04-15 10:51:59 +02:00
aignatov-bio 063f02dc56
Add ability to select filters with keyboard [SCI-3200] (#1649) 
* Add ability to select fitlers with keyboard
 2019-04-15 10:30:08 +02:00
aignatov-bio 8d7cc57da1
Add zoom to image annotation and check jpeg file quality before save [SCI-3300] (#1654) 
* Add zoom to image annotation and check jpeg file quality before save
* Move compression to front end
* Move quality extractor to paperclip processor
 2019-04-15 09:49:44 +02:00
Alex Kriuchykhin 3250ab70f4
Merge pull request #1668 from okriuchykhin/ok_SCI_3292_v2 
Switch to kaminari pagination in global activities [SCI-3292]
 2019-04-12 16:04:48 +02:00
Oleksii Kriuchykhin 231106e131 Switch to kaminari pagination in global activities [SCI-3292] 2019-04-12 15:37:45 +02:00
Jure Grabnar be90881849
Merge pull request #1665 from jbargu/jg_sci_2949_3318 
Disable editing of office file in view mode when module is locked [SCI-2949, 3318]
 2019-04-12 13:00:18 +02:00
Jure Grabnar 1e5721ce95 Disable editing of office file in view mode when module is locked 
Closes SCI-2949
 2019-04-11 17:21:07 +02:00
Alex Kriuchykhin 7f20b7fa20
Merge pull request #1661 from okriuchykhin/ok_SCI_3292 
Improve global activities pagination and fetching [SCI-3292]
 2019-04-11 16:23:37 +02:00
aignatov-bio 9377628f5e
Release team space after update image [SCI-3299] (#1656) 
* Release team space after update image
 2019-04-11 09:20:05 +02:00
Oleksii Kriuchykhin d378e33038 Improve global activities pagination and fetching [SCI-3292] 2019-04-10 15:45:17 +02:00
aignatov-bio cfbb2a83a6
Merge pull request #1650 from aignatov-bio/ai-sci-3295-update-api-endpoints-new-activities 
Update API endpoints for new activities [SCI-3295]
 2019-04-10 13:46:30 +02:00
Urban Rotnik caccf8d9f0 Reset counter for export in last 24 hours 
Fix for check if user has avaiable exports, bit refactored increas_counter method.
 2019-04-10 10:56:33 +02:00
aignatov-bio e2e299b424
Add dynamic generating filters for global activities [SCI-3228] (#1644) 
* Add dynamic generating filters

* Add url methods
 2019-04-09 09:08:27 +02:00
Anton Ignatov 811f07a62c Update API endpoints for new activities 2019-04-08 15:07:45 +02:00
Jure Grabnar d60cc2cd1c Refactor create_wopi_file 2019-04-04 17:05:25 +02:00
Jure Grabnar 20446fb39d Hound formatting fixes 2019-04-04 17:05:25 +02:00
Jure Grabnar 983f90ddf6 Add file name presence check 2019-04-04 17:05:25 +02:00
Jure Grabnar b12916b828 Add main functionality 2019-04-04 17:05:25 +02:00
Jure Grabnar 613843d095 Temp commit 2019-04-04 16:58:55 +02:00
Jure Grabnar 9a4cd4fda2 Add file_present true 2019-04-04 16:57:36 +02:00
Jure Grabnar 3b8e6fa47c Test office online 2019-04-04 16:57:36 +02:00
aignatov-bio a1047f4597
Fix activities wording [SCI-3287] (#1635) 
* Fix activities wording

* Adding project to export protocol
 2019-04-04 10:45:35 +02:00
Alex Kriuchykhin c86b535a25
Merge pull request #1638 from okriuchykhin/ok_SCI_3289 
Improve large image saving after editing [SCI-3289]
 2019-04-03 16:44:08 +02:00
Oleksii Kriuchykhin 9e91e9e59d Improve large image saving after editing [SCI-3289] 2019-04-03 16:31:56 +02:00
Jure Grabnar f00f4d39af Refactor step activities using position_plus_one 
Closes SCI-3273
 2019-04-03 13:10:45 +02:00
Jure Grabnar 26848ecaef Refactor step position + 1 into a method 2019-04-03 13:07:30 +02:00
Alex Kriuchykhin bfd275c313
Merge pull request #1632 from okriuchykhin/ok_SCI_3281 
Fix permission checks for file editing and make protocol preview files read only [SCI-3281]
 2019-04-03 11:39:59 +02:00
Jure Grabnar 6a9ef8b98d
Merge pull request #1633 from jbargu/jg_sci_3276 
Wrap user sign_in into rescue block [SCI-3276]
 2019-04-03 10:56:56 +02:00
aignatov-bio e034a0c055
Fix bug with update protocol from repository and modal disable button [SCI-3284] (#1631) 
* Fix bug with update protocol from repository and modal disable button
 2019-04-03 09:18:18 +02:00
Jure Grabnar 91820ed9c1 Wrap sign_in user into begin/rescue block 
Closes SCI-3276
 2019-04-03 09:09:20 +02:00
Oleksii Kriuchykhin c47d243b1f Disable WOPI edit button in read only mode [SCI-3281] 2019-04-02 17:45:26 +02:00
Oleksii Kriuchykhin ffa7c5ecb2 Fix permition checks for file editing and make protocol preview files read only [SCI-3281] 2019-04-02 16:38:53 +02:00
Anton Ignatov 94efd2e649 Fix tests 2019-04-02 16:04:50 +02:00
Urban Rotnik 86ddbc68b6 fixup! Show date actual value without link 2019-04-02 14:21:06 +02:00
Anton Ignatov c9f9523210 Remove src when save description and rename token tag 2019-04-02 13:41:32 +02:00
Urban Rotnik 8eaeeee9f8 Show date actual value without link 2019-04-02 13:15:34 +02:00
aignatov-bio e6102c72c7
Adding missed activities [SCI-3253] (#1614) 
* Adding missed activties

* Adding test for activities
 2019-04-02 11:50:37 +02:00
aignatov-bio e93b0c3109
Adding preload filters for global activities [SCI-3254] (#1619) 
* Adding preload filter for global activities

* Adding link to task activities
 2019-04-02 11:14:36 +02:00
Jure Grabnar e165459ef5
Merge pull request #1574 from jbargu/jg_sci_3149_3163 
Valid smart annotation links of smart annotation imported within protocol [SCI-3149, 3163]
 2019-04-01 14:32:54 +02:00
Mojca Lorber 3c69225d6b Change activities for task protocols 2019-03-29 15:09:20 +01:00
Oleksii Kriuchykhin 7d4fbcb32e Fix unconfirmed users clean-up issues [SCI-3172] 2019-03-29 11:11:53 +01:00
Alex Kriuchykhin 913bdd91be
Merge pull request #1610 from okriuchykhin/ok_SCI_3251 
Make subject search more precise in global activities [SCI-3251]
 2019-03-29 09:28:13 +01:00
aignatov-bio b51dcc9d75
Adding children selector to global activities subjects [SCI-3247] (#1605) 
* Adding children selector to global activities subjects

* Fix naming, add seperate check for project id
 2019-03-29 09:26:27 +01:00
Alex Kriuchykhin 88b4ca0798
Merge pull request #1609 from okriuchykhin/ok_SCI_3213 
Fix role name in change user role in team activity [SCI-3213]
 2019-03-28 17:32:51 +01:00
Alex Kriuchykhin 9137740266
Merge pull request #1607 from okriuchykhin/ok_SCI_3229 
Fix links for archived objects in global activities [SCI-3229][SCI-3241]
 2019-03-28 17:32:24 +01:00
Oleksii Kriuchykhin 58af23e9b5 Make subject search more precise in global activities [SCI-3251] 2019-03-28 17:03:05 +01:00
Oleksii Kriuchykhin 6bc944fcc7 Fix role name in change user role in team activity [SCI-3213] 2019-03-28 16:26:07 +01:00
Oleksii Kriuchykhin d7d45bec70 Fix links for archived objects in global activities [SCI-3229] 2019-03-28 13:43:50 +01:00
mlorb 5f663b3c74
Merge pull request #1600 from mlorb/ml-sci-3215 
Implement missing tests for global activities [SCI-3215][SCI-3219]
 2019-03-28 11:10:38 +01:00
aignatov-bio 08263ab64e
adding filters for task activities [SCI-3076] (#1553) 
* update task activity screen
 2019-03-28 10:55:48 +01:00
aignatov-bio 8416d1ab1c
Merge branch 'master' into ai-sci-3239-add-localization-team-for-objects 2019-03-28 09:13:34 +01:00
Jure Grabnar 07609d34c8 User/teams are now alphabetically listed 2019-03-27 15:34:01 +01:00
Anton Ignatov 3676aeb83c Adding localization to subjects group name in filters 2019-03-27 15:30:04 +01:00
Mojca Lorber f06358b2ae Implement missing tests for global activities (task and protocol activities) 2019-03-27 11:24:44 +01:00
Oleksii Kriuchykhin dab75d5aec Fix duplicated projects in new report modal [SCI-3173] 2019-03-26 17:24:30 +01:00
Oleksii Kriuchykhin 2ff43a3320 Change filtering logic when no filters are selected [SCI-3223] 2019-03-26 16:04:03 +01:00
Alex Kriuchykhin 935e3a65cf
Merge pull request #1586 from okriuchykhin/ok_SCI_3199 
Fix multiple bugs in global activities [SCI-3197][SCI-3199][SCI-3213][SCI-3225]
 2019-03-26 16:02:44 +01:00
Miha Mencin 9a30d7be9d SCI-3232 renaming the attribute name so it doesnt get 'constantized' 2019-03-26 11:39:54 +01:00
Oleksii Kriuchykhin e3a3ec4491 Fix multiple bugs in global activities [SCI-3197][SCI-3199][SCI-3213][3225] 2019-03-25 17:38:13 +01:00
Miha Mencin 4a87216a3d
Merge branch 'master' into features/global-activities 2019-03-25 14:35:24 +01:00
aignatov-bio 9fff93ab0e
Merge pull request #1576 from biosistemika/image-editor-prototype 
Feature/Image annotation
 2019-03-22 16:31:00 +01:00
Anton Ignatov 65521533b4 change js.erb to js 2019-03-22 13:35:11 +01:00
Anton Ignatov 4ec0a3c871 Update TinyMCE image loader for new fields 2019-03-22 10:52:26 +01:00
Anton Ignatov bc58f0aecd Merge branch 'features/note-section' into ai-sci-3131-improve-image-file-upload 2019-03-21 11:48:51 +01:00
Mojca Lorber c55e314ed5 Refactor upon the review requests 2019-03-20 21:34:47 +01:00
Anton Ignatov 55c93922ea markup fixes 2019-03-20 14:46:54 +01:00
Anton Ignatov 07c2819163 refactoring tinymce image uploading 2019-03-20 14:46:54 +01:00
Oleksii Kriuchykhin 0c2b7959b6 Fix smart annotations in RTE [SCI-3111] 2019-03-20 11:41:36 +01:00
Mojca Lorber 4f9814b884 Merge branch 'features/global-activities' of github.com:biosistemika/scinote-web into ml-sci-3021 2019-03-20 11:03:00 +01:00
Jure Grabnar cf5505d95f Add missing inventory name in notification 
Closes SCI-3149
 2019-03-20 10:52:58 +01:00
Anton Ignatov 29b67be127 Fix team selection in global activities and add link from navbar 2019-03-20 10:33:22 +01:00
Mojca Lorber cd7a87348f Protocol activities refactoring, without tests 2019-03-19 16:12:07 +01:00
Mojca Lorber c476816359 Task activities refactoring, without tests 2019-03-19 15:33:57 +01:00
Mojca Lorber 7757096693 Results activities refactoring 2019-03-19 15:33:57 +01:00
Mojca Lorber 1418abc8d7 Reports activities refactoring 2019-03-19 15:33:57 +01:00
Mojca Lorber d1e38e5bc9 Project activities refactoring 2019-03-19 15:33:57 +01:00
Mojca Lorber 70eebca5ee experiment activities refactoring 2019-03-19 15:33:57 +01:00
aignatov-bio 6eae12efab
Updating permission check for image editing [SCI - 3153, 3159] (#1568) 
*Add permission check for assets editing

* Add check for image format
 2019-03-19 13:52:57 +01:00
Anton Ignatov f606210652 Rubocop fix 2019-03-19 13:52:03 +01:00
Anton Ignatov 87280f083a [SCI-3166] Finalize global activities front end 2019-03-19 13:50:55 +01:00
aignatov-bio a0a3c4b97f
Fix file format bug (#1569) 2019-03-19 11:06:36 +01:00
Oleksii Kriuchykhin 0c71493fdb Add viewing permissions for global activities [SCI-2997] 2019-03-18 15:38:19 +01:00
Urban Rotnik 5dccdbab17 fixup! Fix failing tests 2019-03-15 11:12:10 +01:00
Urban Rotnik 2ea2700837 fixup! Fix failing tests 2019-03-15 10:30:51 +01:00
Oleksii Kriuchykhin a822227383 Add rich text editor to task and protocol description [SCI-3062][SCI-3071] 2019-03-14 16:27:33 +01:00
Oleksii Kriuchykhin 645930b8d7 Merge branch 'master' into features/note-section 2019-03-14 16:25:51 +01:00
Urban Rotnik b6a8556601 Add activities for exporting Projects, Inventory items 2019-03-12 09:15:06 +01:00
Urban Rotnik e7b57aa4f7 Add creating activities for Team actions 2019-03-12 09:15:06 +01:00
Urban Rotnik 3f18166320 Add Task and TaskTags activities 2019-03-12 09:15:06 +01:00
Urban Rotnik 7a05e817ef Add new Protocol steps activities 2019-03-12 09:15:06 +01:00
Urban Rotnik b33e95e18a New Protocols actions logging 2019-03-12 09:14:53 +01:00
Urban Rotnik cfe2888bea Repository columns actions loggin 2019-03-12 09:11:00 +01:00
Urban Rotnik 32422c00eb RepositoryRows actions loggin 2019-03-12 09:11:00 +01:00
Urban Rotnik 2a7bbac733 Repository actions logging 2019-03-12 09:11:00 +01:00
Urban Rotnik 976831e7d3 Edit and Archive experiment activity logging 2019-03-12 09:11:00 +01:00
Oleksii Kriuchykhin feb75f62e1 Add workaround for image caching in fabric js [SCI-2855] 2019-03-11 15:10:32 +01:00
Oleksii Kriuchykhin 80e525fd97 Improve image editor behaviour [SCI-2855] 2019-03-11 15:09:49 +01:00
Oleksii Kriuchykhin 89e968c410 Add tui.image-editor [SCI-2815] 2019-03-11 15:08:15 +01:00
Urban Rotnik 9ed3313f0f Create project activity refactored 2019-03-11 08:36:15 +01:00
Jure Grabnar eceda4909f Move edit_file permission for wopi file in a special function 
Used for overwritting it in addons.

Closes SCI-2949
 2019-03-08 12:22:35 +01:00
aignatov-bio ec2dbb897f
Adding side pane filter and top pane tags [SCI - 3008, 3009, 3010, 3011, 3012, 3018, 3019, 3020] (#1521) 
* Adding side pane filtering and top pane
 2019-03-06 10:34:04 +01:00
aignatov-bio 125d2a3b9b
New inline tags editing in task [SCI 3093] (#1529) 
* Adding inline tags selection
 2019-03-06 09:18:45 +01:00
aignatov-bio b1df8c9aa7
Adding inline editing to experiment title, project title and task title [SCI-3059] (#1524) 
* Adding inline editing to experiment title, project title and task title
 2019-03-06 09:17:34 +01:00
Miha Mencin 9807c80286 move the create action to the tope section of controller 2019-03-05 10:49:36 +01:00
Miha Mencin 67fe486874 put the scheduling logic into session create action 2019-03-05 10:43:39 +01:00
Miha Mencin fa7bba9de7 scheduling creation of demo project at the sign in time 
remove wrong schema, fix comment, add migration
 2019-03-04 18:26:15 +01:00
Miha Mencin 844303ae7c SCI-3119 schedule the creaton of template 2019-03-01 17:47:04 +01:00
Oleksii Kriuchykhin 61147b480c Add main global activities bussiness logic [SCI-3014] 2019-02-26 11:01:15 +01:00
Urban Rotnik 3ad6cee766 Fix tests, remove nullable field 2019-02-25 16:50:38 +01:00
Miha Mencin 76c3db0b11 added layout, added css, added select2 lib, WIP 2019-02-25 16:50:38 +01:00
Miha Mencin bcd0b433b6
Merge pull request #1514 from biosistemika/features/system-notifications 
Features/system notifications
 2019-02-21 16:38:58 +01:00
aignatov-bio 5f78d83f9c
Changing status from unread to read system notification is not correct one [SCI-3077 and SCI-3075] (#1513) 
* fix dropdown apperance

* Remove search and fix duplicate bug

* Fix specs for new method
 2019-02-21 16:15:13 +01:00
aignatov-bio fcdb4e7a92
Merge pull request #1500 from biosistemika/features/system-notifications 
Features/system notifications
 2019-02-19 13:51:18 +01:00
aignatov-bio 8e905b67b2
System notification navbar menu drop down [SCI 2955] (#1498) 
* Add dropdown menu and icon for system notifications
* Finish system notification dropdown menu and add tests
 2019-02-19 11:08:59 +01:00
aignatov-bio c598541e09
System notification modal window [SCI-2957 and SCI-2958] (#1484) 
* Added new system notification modal

* Adding loading system notification on sign in
 2019-02-15 13:07:29 +01:00
mlorb 71e4cc4dbd
Merge branch 'master' into ml-sci-2940 2019-02-13 14:35:03 +01:00
aignatov-bio 5c85595ab4
System Notifications - View All Page [SCI-2956 and SCI-3001] (#1482) 
* System notification view and notification partial (SCI 2956 and SCI 3001)
 2019-02-13 13:06:14 +01:00
Oleksii Kriuchykhin 3376fd012c Improve error loggin in protocol import [SCI-3023] 2019-02-07 14:00:24 +01:00
Urban Rotnik 6f7fcb0831 Refactor method clone_experiment_as_template into service object 
[SCI-2925]
 2019-01-31 07:13:40 +01:00
mz3944 2ae56eb13f
Merge pull request #1448 from mz3944/mz-SCI-2929 
Can not switch team [SCI-2929]
 2019-01-31 04:43:39 +01:00
Urban Rotnik 4cf12d12d1 Refactor 'move_experiment' method into service object 
Jira Ticket: SCI-2926
 2019-01-28 11:45:36 +01:00
Urban Rotnik 16e9a56874 Add recaptcha to invitation modal 
SCI-2935
 2019-01-25 11:27:01 +01:00
Urban Rotnik 247bae8a9f Refactor export_all_counter increasing/reseting logic 
- Remove daily task
- Add method to user Model
 2019-01-25 11:16:31 +01:00
Mojca Lorber fa1dff6352 refactor Demo project generation 2019-01-24 13:40:53 +01:00
mz3944 f6c8af105d
Merge pull request #1434 from mz3944/mz-SCI-2903 
Fix (unite) Date and Time display formats [SCI-2903]
 2019-01-21 09:50:34 +01:00
Miha Mencin 0766ee96a7
Merge pull request #1447 from okriuchykhin/ok_SCI_2875_v2 
Fix task tags update on canvas cards [SCI-2875]
 2019-01-16 12:44:50 +01:00
Oleksii Kriuchykhin 3a4b992f4e Code style fixies []SCI-2875] 2019-01-14 16:31:23 +01:00
Matej Zrimšek a5c1cf4450 Switch user's team if he's no longer a member of the currently selected one 2019-01-12 23:39:31 +01:00
Oleksii Kriuchykhin 89240659a7 Fix task tags update on canvas cards [SCI-2875] 2019-01-11 17:20:39 +01:00
Alex Kriuchykhin b530cea771
Merge pull request #1438 from okriuchykhin/ok_SCI_2776 
Add counters to task inventories dropdown [SCI-2776]
 2019-01-11 16:27:22 +01:00
Oleksii Kriuchykhin 132f46b136 Improve error handling in task inventories dropdown [SCI-2776] 2019-01-10 21:11:20 +01:00
Matej Zrimšek 8070b7f8b5 Fix Date and Time display formats on JS side 2019-01-08 08:07:24 +01:00
Oleksii Kriuchykhin 534866467b Add counters to task inventories dropdown [SCI-2776] 2019-01-03 14:11:00 +01:00
Oleksii Kriuchykhin 2769add4d9 Disable edit button for unsupported WOPI formats [SCI-2904] 2018-12-31 18:10:12 +01:00
Alex Kriuchykhin 8a348b8504
Merge pull request #1422 from okriuchykhin/ok_SCI_2910 
Improve rendering speed of inventory table [SCI-2910]
 2018-12-16 19:45:29 +01:00
Oleksii Kriuchykhin d5c07fd22a Improve rendering speed of inventory table [SCI-2910] 2018-12-13 16:17:22 +01:00
Oleksii Kriuchykhin 311189a2e9 Replace reports materialized view with normal queries and re-enable fragment caching [SCI-2894] 2018-12-13 11:18:09 +01:00
Alex Kriuchykhin 4e416fe81b
Merge pull request #1404 from okriuchykhin/ok_SCI_2822 
Return task inputs/outputs as references [SCI-2822]
 2018-12-12 11:36:39 +01:00
mlorb 3f79cc5f93
Merge pull request #1418 from mlorb/ml-sci-2905 
Fix due date can not be set [SCI-2905]
 2018-12-12 11:27:57 +01:00
mlorb 426fadc10a Fix due date can not be set 2018-12-11 10:31:13 +01:00
mlorb 4040b31143 Fix behavior when user has no teams 2018-12-10 15:42:05 +01:00
Alex Kriuchykhin 37db41e18e
Merge pull request #1405 from okriuchykhin/ok_SCI_2881 
Refresh sidebar when project is archived/restored [SCI-2881]
 2018-12-10 14:11:34 +01:00
Oleksii Kriuchykhin 2c96f08b98 Refresh sidebar when project is archived/restored [SCI-2881] 2018-11-29 14:20:20 +01:00
Oleksii Kriuchykhin 5b566b48ae Improve error messages and fix task users/items endpoints [SCI-2886] 2018-11-28 14:14:45 +01:00
Oleksii Kriuchykhin b3a377f949 Return task inputs/outputs as references [SCI-2822] 2018-11-28 11:33:00 +01:00
Alex Kriuchykhin 20e2cbf0ca
Merge pull request #1391 from okriuchykhin/ok_SCI_2880 
Fix smart annotations rendering issues [SCI-2880]
 2018-11-28 09:47:20 +01:00
mlorb 398c2f0576
Merge pull request #1392 from mlorb/ml-sci-2676 
Hide sign-in with third party applications (e.g. LinkedIn) in Oauth… [SCI-2676]
 2018-11-27 11:06:45 +01:00
mlorb 0b6b3b3609 code simplify 2018-11-27 10:58:51 +01:00
Oleksii Kriuchykhin d67abfda2c Additional fixies for smart annotations [SCI-2880] 2018-11-26 15:17:18 +01:00
Jure Grabnar 7812f70c2f
Merge pull request #1393 from jbargu/jg_2790_protocolsio_fix 
Protocols - import from protocols.io doesn't work
 2018-11-26 14:56:25 +01:00
mlorb 18d9ab5888 fixes upon @Ducz0r request 2018-11-26 14:23:26 +01:00
Jure Grabnar 6ec2c99a28 Hound styling 2018-11-26 13:52:01 +01:00
Jure Grabnar 0086e4dcf3 Catch some of templates error when import protocols.io 2018-11-26 13:43:05 +01:00
Jure Grabnar 1c7a051551 Catch all errors on PIO import and show message 2018-11-23 20:47:48 +01:00
mlorb f61187dd18 Hide sign-in with third party applications (e.g. LinkedIn) in Oauth flows 2018-11-23 15:44:04 +01:00
Oleksii Kriuchykhin 5deaf25fd9 Prevent user being added to project/task multiple times [SCI-2869] 2018-11-20 14:29:33 +01:00
Alex Kriuchykhin a6bc02a2cb
Merge pull request #1369 from okriuchykhin/ok_SCI_2830 
Refactor result and step comments [SCI-2830]
 2018-11-20 00:13:15 +01:00
mlorb 3b96a60938
Merge pull request #1374 from mlorb/ml-sci-2842 
Update the Export all confirmation modal and export interaction [SCI-2842]
 2018-11-19 11:36:08 +01:00
Alex Kriuchykhin d524a1d508
Merge pull request #1364 from okriuchykhin/ok_SCI_2778 
Add time format selection to settings [SCI-2778]
 2018-11-19 10:17:09 +01:00
mlorb 4b540958bd change close/cancel button and refactor export_project_modal endpoint 2018-11-16 13:37:32 +01:00
mlorb 6453ab6fb1 update the Export all confirmation modal and export interaction 2018-11-15 15:53:58 +01:00
Luka Murn e9c0b34662 Merge branch 'core-api' into 'master' 
Conflicts:
	Gemfile
	app/services/api.rb
	config/initializers/api.rb
	config/initializers/extends.rb
	config/routes.rb
	db/schema.rb
	spec/controllers/api/api_controller_spec.rb
 2018-11-14 16:59:04 +01:00
Oleksii Kriuchykhin 3fd687161f Remove unused variables from activities controller [SCI-2778] 2018-11-14 13:17:38 +01:00
Oleksii Kriuchykhin 537de596a7 Merge latest master [SCI-2778] 2018-11-14 13:05:57 +01:00
Luka Murn c0940b143a Fix root page bug introduced with merge features/core-api -> master 2018-11-13 21:24:20 +01:00
Oleksii Kriuchykhin fb309a12b9 Refactor result and step comments initialization [SCI-2830] 2018-11-13 16:57:42 +01:00
Luka Murn 84df2c81f9 Merge branch 'features/export-all' 
Conflicts:
	app/controllers/experiments_controller.rb
	app/controllers/my_modules_controller.rb
	db/schema.rb
 2018-11-13 09:14:02 +01:00
Oleksii Kriuchykhin e89d60785f Fix dates on activities and experiments [SCI-2778] 2018-11-12 10:26:48 +01:00
Oleksii Kriuchykhin 8d0dbc7076 Add time format selection to settings [SCI-2778] 2018-11-09 16:19:40 +01:00
mlorb 75875e5421 fix user_project manage permission 2018-11-09 11:36:44 +01:00
mlorb a56d22a329
change count to size 2018-11-08 09:43:32 +01:00
Oleksii Kriuchykhin 23ee4760ae Fix failing tests [SCI-2773] 2018-11-07 16:39:00 +01:00
Oleksii Kriuchykhin 30885e060d Merge latest core-api branch [SCI-2773] 2018-11-07 15:53:21 +01:00
Oleksii Kriuchykhin 60e78fa868 Improve code style for error handling [SCI-2773] 2018-11-07 15:43:44 +01:00
mlorb 4d156080ac fix empty projects page bug and projects tree bug 2018-11-07 13:45:46 +01:00
mlorb ad5f4c2ebb
Merge pull request #1356 from mlorb/ml-sci-remove-protocol-show-endpoint 
Remove show protocol api endpoint
 2018-10-30 14:04:17 +01:00
Alex Kriuchykhin 2f466383a5
Merge pull request #1333 from okriuchykhin/ok_SCI_2742 
RESTful API for Object Querying (READ) - unit tests [SCI-2742]
 2018-10-29 16:26:58 +01:00
Alex Kriuchykhin 126fa03305
Merge pull request #1349 from okriuchykhin/ok_SCI_2818 
Fix project index endpoint permission bug [SCI-2818]
 2018-10-29 14:59:22 +01:00
Alex Kriuchykhin 1083ce61fb
Merge pull request #1352 from okriuchykhin/ok_SCI_2814 
Rename user_id to sub in JWT [SCI-2814]
 2018-10-29 14:54:00 +01:00
mlorb 0f8c80172e remove show protocol api endpoint 2018-10-29 11:21:48 +01:00
mz3944 d733f4e357
Merge pull request #1346 from mz3944/mz-SCI-2787 
In project list table table is not updated when archiving/restoring project [SCI-2787]
 2018-10-28 14:36:17 +01:00
Oleksii Kriuchykhin 04ff5870af Rename user_id to sub in JWT [SCI-2814] 2018-10-28 14:34:51 +01:00
Jure Grabnar 0977f5251d
Merge pull request #1351 from jbargu/jg_add_zero_limit_to_export 
Fix zero limit config on export all
 2018-10-28 13:38:21 +01:00
Jure Grabnar cab0b78afa Fix zero limit config on export all 2018-10-28 09:43:34 +01:00
Oleksii Kriuchykhin 9ad2718f32 Fix project index endpoint permission bug [SCI-2818] 2018-10-26 16:46:01 +02:00
Oleksii Kriuchykhin 93e7c3f390 Fix inventory column creation permission check [SCI-2782] 2018-10-26 14:38:47 +02:00
Jure Grabnar 7d2f2c3b5f
Merge pull request #1337 from jbargu/jg_bug_sci_2805 
Add can_export_project? permission to allow archived projects to be exported [SCI-2805]
 2018-10-26 11:23:57 +02:00
Matej Zrimšek 18e52e2c6f Fix fetching all user projects [SCI-2787] 2018-10-24 00:29:30 +02:00
Oleksii Kriuchykhin b53f2c8347 Improve error messages in API [SCI-2773] 2018-10-23 17:52:48 +02:00
Jure Grabnar bd5a2a43fd Add can_export_project? permission 
Closes [SCI-2805].
 2018-10-19 08:41:39 +02:00
Alex Kriuchykhin 18b1cad8a4
Merge pull request #1334 from okriuchykhin/ok_SCI_2772 
Implement inventory column data type name mappings [SCI-2772]
 2018-10-17 10:37:23 +02:00
Oleksii Kriuchykhin e4e66d3e5d Merge branch 'core-api' into ok_SCI_2742 2018-10-16 17:38:30 +02:00
Oleksii Kriuchykhin 02f536cd08 Merge latest features/export-all [SCI-2733] 2018-10-16 17:20:19 +02:00
Oleksii Kriuchykhin ed46115b3f Implement inventory column data type name mappings [SCI-2772] 2018-10-16 15:35:02 +02:00
Oleksii Kriuchykhin f6b039d54e Merge latest core-api branch [SCI-2765] 2018-10-16 12:07:47 +02:00
Jure Grabnar ed16e8d479 Fix reviewers errors 2018-10-16 11:00:38 +02:00
Jure Grabnar 26df1e5a98 Add export project modal 
Closes [SCI-2645]
 2018-10-16 11:00:38 +02:00
Oleksii Kriuchykhin 0db9ef44e2 Add experiment, task, result READ endpoints tests [SCI-2742] 2018-10-15 16:27:22 +02:00
Luka Murn 1093ea11f4 Merge branch 'lm-api-fixes' of https://github.com/Ducz0r/scinote-web into Ducz0r-lm-api-fixes 
Conflicts:
	app/serializers/api/v1/activity_serializer.rb
	app/serializers/api/v1/inventory_column_serializer.rb
	app/serializers/api/v1/project_serializer.rb
 2018-10-15 15:20:26 +02:00
Oleksii Kriuchykhin f221d71bbc Fix datatables state restore [SCI-2733] 2018-10-12 15:15:43 +02:00
Luka Murn a217b11bba
Merge pull request #1298 from Zanz2/zz_projects_api_task_2539 
Created read endpoint for projects and related models [SCI-2539]
 2018-10-11 09:03:18 +02:00
Luka Murn dd4f7b5d02 Fix project users, activities, comments, reports endpoints 2018-10-10 17:35:09 +02:00
Oleksii Kriuchykhin af02f29fb5 Implement user state saving for projects overview [SCI-2733] 2018-10-10 16:15:31 +02:00
Alex Kriuchykhin 16b29b50a5
Merge pull request #1321 from okriuchykhin/ok_SCI_2731 
Add Projects view - list/table view [SCI-2731]
 2018-10-08 17:53:35 +02:00
Oleksii Kriuchykhin 77e2371091 Add tests for inventory cell endpoints [SCI-2765] 2018-10-08 13:25:03 +02:00
Luka Murn a8d56d32e2 Hound is love, Hound is life 2018-10-07 13:28:29 +02:00
Luka Murn 7527dc7352 Fix READ index, READ show, POST create /tasks/:id/results endpoints 2018-10-07 12:58:17 +02:00
Luka Murn fc5cf33614 Fix GET /tasks/:id/activities endpoint 2018-10-07 11:54:11 +02:00
Luka Murn fca580face Fix GET /tasks/:id/inputs, GET /tasks/:id/outputs endpoints 2018-10-07 11:35:12 +02:00
Luka Murn 239b974fa0 Fix GET /tasks/:tid/protocols, GET /tasks/:tid/protocols/:id endpts 2018-10-07 11:29:56 +02:00
Luka Murn 24299ef4c0 Fix GET /tasks/:task_id/tags, GET /tasks/:task_id/tags/:id endpts 2018-10-07 11:10:41 +02:00
Luka Murn 98544f00e8 Fix GET /tasks/:task_id/users, GET /tasks/:task_id/users/1 endpts 2018-10-07 10:20:01 +02:00
Luka Murn 94e80edc9b Minor variable rename in task_groups_controller.rb 2018-10-07 10:16:00 +02:00
Luka Murn f56e5b1e5a Update GET /task/:task_id/items, GET /task/:task_id/items/:id endpts 2018-10-07 10:07:37 +02:00
Luka Murn 0de3c7eb4e Update GET /tasks, GET /tasks/:id endpoints, refactor routes.rb 2018-10-07 09:45:24 +02:00
Luka Murn 0643ba216e Fix GET /connections, /connections/:id endpoints 2018-10-07 00:53:39 +02:00
Luka Murn c9a15db85f Fix GET /task_groups endpoints 2018-10-06 20:11:01 +02:00
Luka Murn d235dd7807 Update GET /inventory_items, GET /inventory_items/:id endpoints 2018-10-06 18:37:40 +02:00
Luka Murn 9e78de6ef2 Update CREATE, PATCH, DELETE inventory_column endpoints 2018-10-06 17:11:59 +02:00
Luka Murn 6625b4019e Update GET /inventory_columns, GET /inventory_columns/:id endpts 2018-10-06 13:47:41 +02:00
Luka Murn eaa8a627a8 Update GET /inventories, GET /inventories/:inventory_id endpoints 2018-10-06 12:39:44 +02:00
Luka Murn 6faaff550b Update GET /teams, GET teams/:team_id endpoints slightly 2018-10-06 12:18:57 +02:00
Jure Grabnar d7c875135e
Merge pull request #1304 from jbargu/jg_zipfile_structure 
Create zipfile structure for export all, implement inventory CSV for export [SCI-2640] [SCI-2642] [SCI-2643] [SCI-2644]
 2018-10-05 15:36:56 +02:00
Oleksii Kriuchykhin 0c452f519d Add CRUD endpoints for inventory cells [SCI-2765] 2018-10-05 00:18:42 +02:00
Oleksii Kriuchykhin 363c1e4a34 Add endpoints for managing inventory list items [SCI-2741] 2018-10-03 13:54:52 +02:00
Oleksii Kriuchykhin 492a5de19e Add Projects view - list/table view [SCI-2731] 2018-10-01 15:39:42 +02:00
Oleksii Kriuchykhin 2508394924 Refactor Projects view - cards view [SCI-2730] 2018-09-27 10:43:44 +02:00
Zanz2 2e0c40ed45 fixed merge 2018-09-26 12:20:13 +02:00
Zanz2 c8ed808920 merged with core-api 2018-09-26 12:17:49 +02:00
Zanz2 1a512698e8
Merge pull request #1286 from Zanz2/zz_search_page_update_bug_sci2684_v2 
( better solution ) Search page results from different teams than active not switching active team on click [SCI-2684]
 2018-09-26 12:04:09 +02:00
Alex Kriuchykhin 112343e65d
Merge pull request #1311 from okriuchykhin/ok_SCI_2738 
Improve delayed jobs for TempFile deletion and Asset text extraction [SCI-2738]
 2018-09-25 11:49:19 +02:00
Oleksii Kriuchykhin e06684b7cf Few fixes after review [SCI-2718] 2018-09-24 18:10:37 +02:00
Oleksii Kriuchykhin ab3aeac26b Merge latest core-api branch [SCI-2718] 2018-09-24 16:49:27 +02:00
Luka Murn 2396149c57
Merge pull request #1273 from Zanz2/zz_tooltip_settings_enable_sci2663 
Added toggle checkbox for tooltips help in prefferences [SCI-2663]
 2018-09-24 16:23:28 +02:00
Zanz2 8699761389
Merge pull request #1297 from Zanz2/zz_tasks_api_task_2667 
Created read endpoint for tasks, results and related data [SCI-2667] [SCI-2669]
 2018-09-24 15:31:47 +02:00
Zanz2 e5b7d68031 this should fix travis ci 2018-09-24 13:33:44 +02:00
Zanz2 1e8442e22e fixed pull request review, forgot some small thing 2018-09-24 12:50:11 +02:00
Zanz2 1a9890ee0f fixed pull request review 2018-09-24 12:48:53 +02:00
Alex Kriuchykhin b38e85c282
Merge pull request #1301 from okriuchykhin/ok_SCI_2693_v2 
Fix CREATE inventory endpoint [SCI-2693]
 2018-09-24 10:51:13 +02:00
Jure Grabnar 872a1211bb Format according to Houndbot #3 2018-09-23 18:58:56 +02:00
Jure Grabnar d6f7ec2604 Format according to houndbot #2 2018-09-23 18:53:43 +02:00
Jure Grabnar 869967361c Fix according to Houndbot 2018-09-23 18:48:44 +02:00
Jure Grabnar 59169f882d Add permission check for every project 2018-09-23 14:34:21 +02:00
Jure Grabnar 90b220ddda Format according to Houndbot #4 2018-09-23 12:06:06 +02:00
Oleksii Kriuchykhin 7f7ece2be0 Improve delayed jobs for TempFile deletion and Asset text extraction [SCI-2738] 2018-09-21 17:46:18 +02:00
Oleksii Kriuchykhin 84428b37c2 Add project view JSON endpoints [SCI-2728] 2018-09-21 10:39:20 +02:00
Luka Murn 5d6881bae1
Merge pull request #1309 from biosistemika/release-1.14.5 
Merge release-1.14.5 into master
 2018-09-20 08:53:51 +02:00
Oleksii Kriuchykhin 872a48082a Remove Samples from search controller [SCI-2739] 2018-09-18 15:03:19 +02:00
Jure Grabnar 449aa12070 Refactor TeamZipExport code (move it into special file) 2018-09-16 20:28:26 +02:00
Oleksii Kriuchykhin 49e788a9ad Mergre latest core-api [SCI-2515] 2018-09-14 10:24:05 +02:00
Oleksii Kriuchykhin acc00ff3b9 Add CREATE Result endpoint: Create Text result [SCI-2718] 2018-09-13 13:38:11 +02:00
Zanz2 8ac1445ace Fixed hound 2018-09-13 11:37:07 +02:00
Zanz2 7f704c07e3 Created base endpoints for projects and related models 2018-09-13 11:37:07 +02:00
Zanz2 dace81f724 created base projects endpoint 2018-09-13 11:37:07 +02:00
Zanz2 bd49ea56c5 Added results endpoint 2018-09-13 11:16:34 +02:00
Zanz2 426bd129cc Added task inputs and outputs functionality 2018-09-13 11:14:22 +02:00
Oleksii Kriuchykhin 9d9a5d07d8 Fix CREATE inventory endpoint [SCI-2693] 2018-09-13 11:08:58 +02:00
Zanz2 2519a010f6 Created new controllers and serializers for nested task related attributes 2018-09-13 11:04:52 +02:00
Zanz2 765ee25853
Merge pull request #1292 from Zanz2/zz_experiments_api_task_2666 
Created API endpoints for experiments and related data [SCI-2666]
 2018-09-13 10:49:49 +02:00
Zanz2 1159ce519c Review changes 2018-09-13 09:25:16 +02:00
Luka Murn 0b68a670c2 Fix the inventory_columns_controller#create action 
Based on unit tests, fix the create inventory columns endpoint
to work as intended. Also add another unit test case.
 2018-09-12 13:44:10 +02:00
Zanz2 4c2c92445c fixed oversight, added paging to connections 2018-09-11 13:07:28 +02:00
Zanz2 7cb50145a0
Merge pull request #1275 from Zanz2/zz_adding_removing_table_sci2621 
Fixed table add and remove crash [SCI-2621]
 2018-09-11 09:37:07 +02:00
Zanz2 e64aee5db0 Completed the functionality for experiments and related endpoints 2018-09-07 11:58:02 +02:00
Zanz2 1589cfb1b2 saving work 2018-09-06 15:38:48 +02:00
Luka Murn 586a442abc Refactor the settings page, rename setting to tooltips_enabled 2018-09-05 16:36:32 +02:00
Zanz2 f9d55f913a trying to fix display of my modules data 2018-09-05 12:54:08 +02:00
Zanz2 5ada21725f inital experiments api functionality 2018-09-05 09:55:04 +02:00
Zanz2 1bed2c2a3c Partially fixed according to pull request review, added comments to code review 2018-08-31 12:11:51 +02:00
Zanz2 d4aa5e60a2 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zz_tooltip_settings_enable_sci2663 
Merging to update db, so i dont have to docker-clean my whole environment 2 times to switch between this branch and up to date ones
 2018-08-31 11:42:26 +02:00
Zanz2 728b1fe491 Reverted deleted lines by accident 2018-08-28 14:51:05 +02:00
Zanz2 b26530a02f Found a new, and more elegant fix inside controller with Luka 2018-08-28 14:48:23 +02:00
Alex Kriuchykhin 18dfeb537b
Merge pull request #1269 from okriuchykhin/ok_SCI_2604 
Improve health check endpoint [SCI-2604]
 2018-08-24 16:55:47 +02:00
Oleksii Kriuchykhin 4d49671ae8 Add CRUD for inventories and columns [SCI-2690][SCI-2691][SCI-2692][SCI-2693][SCI-2694][SCI-2695] 2018-08-24 16:41:26 +02:00
Oleksii Kriuchykhin c8efa4bffc Add SHOW, UPDATE and DELETE inventory item endpoints [SCI-2688][SCI-2689] 2018-08-24 15:48:49 +02:00
Oleksii Kriuchykhin 5488fc66fc Refactor JSON API mime type registration [SCI-2687] 2018-08-24 15:37:23 +02:00
Oleksii Kriuchykhin 490376513b Add inventory item CREATE endpoint [SCI-2687] 2018-08-24 15:36:19 +02:00
Oleksii Kriuchykhin c8abb3d9b8 Add user_identities CRUD endpoints, make API V1 togglable [SCI-2664][SCI-2686] 2018-08-24 15:27:59 +02:00
Alex Kriuchykhin eb2d3e7951
Merge pull request #1276 from okriuchykhin/ok_SCI_2613 
Add READ user endpoint [SCI-2613]
 2018-08-24 15:23:05 +02:00
Alex Kriuchykhin 427ab5fb41
Merge pull request #1264 from okriuchykhin/ok_SCI_2615 
Add GET inventory columns API endpoint [SCI-2615]
 2018-08-24 15:22:35 +02:00
Alex Kriuchykhin 1832c0e806
Merge pull request #1262 from okriuchykhin/ok_SCI_2614 
Add read inventories and inventory items endpoints [SCI-2614][SCI-2616][SCI-2617]
 2018-08-24 15:22:13 +02:00
Alex Kriuchykhin 0ca9972905
Merge pull request #1271 from okriuchykhin/ok_SCI_2628 
Fix error on activities page when user doesn't have any [SCI-2628]
 2018-08-22 14:21:18 +02:00
Jure Grabnar 295c6a9432 Add export all functionality (basic skeleton) 2018-08-21 21:07:45 +02:00
Luka Murn 92eab25a07
Merge pull request #1261 from mlorb/ml-sci-2634 
fix editing of inventory items of hidden columns [SCI-2634]
 2018-08-21 16:59:37 +02:00
Luka Murn 92a4a54ae7 Slighty change the parameter parsing of removed file cells 2018-08-21 16:46:47 +02:00
Oleksii Kriuchykhin a8013118d4 Add READ user endpoint [SCI-2613] 2018-08-21 13:56:14 +02:00
Zanz2 ab3b15e13e Found the bug and fixed it 2018-08-21 13:26:16 +02:00
Zanz2 817d09ad5f fixed hound 2018-08-21 11:29:38 +02:00
Zanz2 beb1d02914 Made fiew part for toggler, now debugging why checkbox doenst render properly and why it defaults to false always 2018-08-20 15:57:09 +02:00
Oleksii Kriuchykhin 3a5238f6f3 Fix error on activities page when user doesn't have any [SCI-2628] 2018-08-20 14:26:42 +02:00
Oleksii Kriuchykhin 1a57289009 Improve health check endpoint [SCI-2604] 2018-08-17 16:13:21 +02:00
Oleksii Kriuchykhin ecde634a2c Add OAuth2 provider [SCI-2515] 2018-08-17 13:17:59 +02:00
Oleksii Kriuchykhin ef7e0ac489 Add GET inventory columns API endpoint [SCI-2615] 2018-08-08 17:31:37 +02:00
Oleksii Kriuchykhin 4df9a4c9ca Fix code style warnings [SCI-2614][SCI-2616][SCI-2617] 2018-08-08 17:01:49 +02:00
Oleksii Kriuchykhin 8d11e03d47 Add read inventories and inventory items endpoints [SCI-2614][SCI-2616][SCI-2617] 2018-08-08 17:01:49 +02:00
Alex Kriuchykhin 6004f8411b
Merge pull request #1260 from okriuchykhin/ok_SCI_2611 
Add GET teams and team API endpoints [SCI-2611][SCI-2612]
 2018-08-08 16:59:42 +02:00
mlorb f52ccfd606 fix editing of inventory items of hidden columns 2018-08-07 11:47:26 +02:00
okriuchykhin 29f0f2afeb
Merge pull request #1257 from okriuchykhin/ok_SCI_2609 
Refactor tasks tree API endpoint [SCI-2609]
 2018-08-02 17:10:55 +02:00
okriuchykhin dd9090efef
Merge pull request #1253 from okriuchykhin/ok_SCI_2608 
Adds API authentication with Azure AD [SCI-2608]
 2018-08-02 11:28:18 +02:00
Oleksii Kriuchykhin 22e12d8fc3 Add GET teams and team API endpoints [SCI-2611][SCI-2612] 2018-07-31 13:40:27 +02:00
Oleksii Kriuchykhin 26b0bd9e11 Refactor tasks tree API endpoint [SCI-2609] 2018-07-30 14:48:11 +02:00
Oleksii Kriuchykhin 0e372af729 Adds API authentication with Azure AD [SCI-2608] 2018-07-24 14:21:33 +02:00
zmagod 29e0ecbc89 move FirstTimeDataGenerator helper from applictaion controller 2018-07-11 11:19:39 +02:00
zmagod 8b86891177 fixes file destroy button [fixes SCI-2546] 2018-07-03 15:25:37 +02:00
zmagod 28bac14667 first working version of the edit form object 2018-07-03 12:57:39 +02:00
ZmagoD 23de3abd61 Fixes repository items edit action, adds additional event listener for file upload 2018-06-29 16:59:26 +02:00
zmagod db1944cc90 move maximum file size limit to an ENV variable [fixes SCI-2415] 2018-06-19 14:15:14 +02:00
zmagod 6a6ff534c0 fixes import flash message [fixes SCI-2398] 2018-06-15 11:12:11 +02:00
zmagod f8ac083d39 adds an additional check if some other user has added/removed repository columns [fixes SCI-2408] 2018-06-12 15:28:03 +02:00
Zmago Devetak 6ba5c587f7
Merge pull request #1189 from ZmagoD/zd_SCI_2211 
add data-hook, refactor add user to project modal to support addons
 2018-06-08 15:23:26 +02:00
zmagod f769215468 fixes assign items flash message [fixes SCI-2487] 2018-06-08 10:02:57 +02:00
Zmago Devetak fad67d7730
Merge pull request #1185 from ZmagoD/zd_SCI_2468 
Limits the max. amount of rows when importing into inventories [fixes…
 2018-06-04 16:29:33 +02:00
zmagod 84170f6de0 add data-hook, refactor add user to project modal to support addons 2018-06-01 16:13:22 +02:00
Oleksii Kriuchykhin 58d8414f92 Code fixes for sidebar [SCI-2478] 2018-06-01 15:05:12 +02:00
Oleksii Kriuchykhin 2ddc0fb561 Improve sidebar rendering performance [SCI-2478] 2018-06-01 13:49:02 +02:00
zmagod 9abf50e7c5 Limits the max. amount of rows when importing into inventories [fixes SCI-2468] 2018-05-31 10:45:31 +02:00
Oleksii Kriuchykhin 6cf9149baa Add user id tracking when discarding repository [SCI-2462] 2018-05-29 15:33:02 +02:00
zmagod 89046e9787 fixes items assign flash message [fixes SCI-2395] 2018-05-29 12:54:41 +02:00
okriuchykhin 6deaa7235b
Merge pull request #1136 from okriuchykhin/ok_SCI_2396 
Handle situation with smart annotations and zero inventories [SCI-2396]
 2018-05-28 17:23:29 +02:00
Zmago Devetak 147e74b4a5
Merge pull request #1164 from ZmagoD/zd_SCI_2448 
adds discard gem, move deletion of repositories in a rake task to run…
 2018-05-28 15:04:54 +02:00
Zmago Devetak ad5114090f
Merge pull request #1165 from ZmagoD/zd_SCI_2433 
fixes tast description/due-date modal [fixes SCI-2433]
 2018-05-28 13:10:15 +02:00
okriuchykhin 0e6c89c3de
Merge pull request #1166 from okriuchykhin/ok_SCI_2342 
Fix WOPI controller to support repositories [SCI-2342]
 2018-05-28 13:07:17 +02:00
zmagod c683cfdbd7 triggers the delayed job in the controller action, fixes smart annotations 2018-05-25 11:41:43 +02:00
Oleksii Kriuchykhin 46d6accf78 Fix search in repositories [SCI-2428] 2018-05-24 17:14:40 +02:00
Oleksii Kriuchykhin b019ab8f61 Fix WOPI controller to support repositories [SCI-2342] 2018-05-24 16:51:25 +02:00
zmagod 10351bbf83 fixes tast description/due-date modal [fixes SCI-2433] 2018-05-24 16:44:10 +02:00
zmagod 1f8db7bc49 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2340 2018-05-24 15:00:59 +02:00
okriuchykhin 7b08529e39
Merge pull request #1156 from okriuchykhin/ok_SCI_2342 
Enable editing office online files in inventories [SCI-2342]
 2018-05-23 12:59:12 +02:00
Luka Murn 31a1641b42
Merge pull request #1155 from Ducz0r/lm-sci-2436-fix 
Update new repository row code so file columns work again [SCI-2436]
 2018-05-22 09:27:32 +02:00
Oleksii Kriuchykhin 5c41527b92 Enable editing office online files in inventories [SCI-2342] 2018-05-21 15:48:48 +02:00
Luka Murn 6135081a71 Update new repository row code so file columns work again 
Also fix backend code a bit (so update & create of repository rows
are more similar in their behavior), and fix line in JS:
_initSelectPicker() was called a reduntant amount of times when
editing repository row.

Closes SCI-2436.
 2018-05-21 14:46:30 +02:00
zmagod ba2aafae39 fix access to public reports [fixes SCI-2340] 2018-05-21 14:45:18 +02:00
zmagod 5514683f96 shorten project name [fixes SCI-2344] 2018-05-18 14:12:12 +02:00
zmagod 38b0cb742c removes empty space 2018-05-17 15:21:45 +02:00
zmagod e019767e90 refactor save_pdf_to_inventory_item service 2018-05-17 13:17:19 +02:00
zmagod b125863baf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2371 2018-05-17 11:25:33 +02:00
zmagod ca0c8cbb71 fixes typos, fixes pdf rendering 2018-05-17 11:21:34 +02:00
Zmago Devetak 9d2303c777
Merge pull request #1115 from ZmagoD/zd_SCI_2321 
fixes images preview in repository/library [fixes SCI-2321]
 2018-05-16 12:05:33 +02:00
okriuchykhin 19ed711ce2
Merge pull request #1142 from okriuchykhin/ok_SCI_2411 
Fix pagination in global search inside repositories [SCI-2411]
 2018-05-16 10:19:05 +02:00
okriuchykhin 3e2b455d2c
Merge pull request #1139 from okriuchykhin/ok_SCI_2385 
Fix task resore permissions [SCI-2385]
 2018-05-16 10:17:51 +02:00
zmagod 4573655ec8 adds save PDF report to inventory feature [fixes SCI-2371] 2018-05-16 09:31:19 +02:00
Oleksii Kriuchykhin 0ca0884937 Fix pagination in global search inside repositories [SCI-2411] 2018-05-15 17:48:48 +02:00
Oleksii Kriuchykhin 1d0536b064 Fix task resore permissions [SCI-2385] 2018-05-15 11:51:53 +02:00
Oleksii Kriuchykhin addf4cfe5e Handle situation with smart annotations and zero inventories [SCI-2396] 2018-05-14 15:34:23 +02:00
Oleksii Kriuchykhin a92abc5995 Fix editing of inventory rows with existing files [SCI-2394] 2018-05-14 14:26:01 +02:00
okriuchykhin 3b4d9fe744
Merge pull request #1132 from okriuchykhin/ok_SCI_2301 
Move REPOSITORIES_LIMIT from constants to env variables [SCI-2301]
 2018-05-10 10:46:25 +02:00
zmagod e5c3fb6af2 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2321 2018-05-10 10:38:56 +02:00
Zmago Devetak 0a4deeaa35
Merge pull request #1112 from ZmagoD/zd_SCI_2261 
propagate assigned repository items in workflow [fixes SCI-2261]
 2018-05-10 09:57:49 +02:00
zmagod 0fe499d4a1 adds the update action to repository records last_modified_by field when downstreaming assigned records 2018-05-10 09:04:12 +02:00
Oleksii Kriuchykhin 8ec643c54b Move REPOSITORIES_LIMIT from constants to env variables [SCI-2301] 2018-05-09 18:03:16 +02:00
Zmago Devetak a6275062b7
Merge pull request #1126 from ZmagoD/zd_SCI_2344 
adds new string truncation method [fixes SCI-2344]
 2018-05-07 16:30:12 +02:00
zmagod fa30278153 change dropdown lenght 2018-05-03 16:25:59 +02:00
zmagod 0b721d86b1 adds new string truncation method [fixes SCI-2344] 2018-05-03 14:24:23 +02:00
mlorb d2c0ae241e
Merge pull request #1121 from mlorb/ml-sci-2244 
Update buttons positions and wording throughout app [SCI-2244]
 2018-05-03 11:05:15 +02:00
zmagod 66b676b5ce Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2321 2018-04-26 17:04:36 +02:00
zmagod 0afe461962 fixes download link 2018-04-26 17:00:51 +02:00
zmagod e9642cadad Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2304 2018-04-26 14:26:30 +02:00
zmagod ca539cdce8 remove samples from search 2018-04-26 14:25:02 +02:00
zmagod 8dac887f10 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2261 2018-04-26 14:18:41 +02:00
zmagod 24acd5c779 fixes per @duco 's request 2018-04-26 14:13:46 +02:00
mlorb 88d5ba369d
Merge branch 'ux-release-1' into ml-sci-2244 2018-04-26 14:07:03 +02:00
Luka Murn cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
Zmago Devetak a6b2bb0228
Merge pull request #1120 from ZmagoD/zd_SCI_2338 
add permission check to repostiory show action [fixes SCI-2338]
 2018-04-26 09:41:43 +02:00
mlorb 9e11f3b220 update buttons positions and wording throughout app 2018-04-25 13:57:12 +02:00
Luka Murn cd04596c62
Merge pull request #1111 from Ducz0r/lm-sci-2276-fix 
Update the code for repository table states so it (hopefully) causes less errors [SCI-2276]
 2018-04-25 12:37:27 +02:00
zmagod 12365b3f0f add permission check to repostiory show action [fixes SCI-2338] 2018-04-25 11:56:30 +02:00
zmagod c2d19fee52 fixes images preview in repository/library [fixes SCI-2321] 2018-04-24 13:11:55 +02:00
Zmago Devetak 096167c125
Merge pull request #1101 from ZmagoD/zd_SCI_2124 
adds new reports index page [fixes SCI-2124]
 2018-04-23 12:42:24 +02:00
zmagod 199a2a23bf fixes per @mlorb 's request 2018-04-23 12:26:21 +02:00
zmagod 824962c084 propagate assigned repository items in workflow [fixes SCI-2261] 2018-04-23 11:33:16 +02:00
Luka Murn d023db16af Update the destroy_column action so it properly updates all states 2018-04-20 12:31:22 +02:00
Luka Murn 21e7e7057e Refactor all the methods into two new services 2018-04-20 12:31:22 +02:00
Luka Murn d8ca42aa0c Refactor repository_table_state and its class methods 2018-04-20 12:31:22 +02:00
Luka Murn 5e2622ecfc Change default repository state to Ruby representation 
Also remove some dead code from repositories datatables
 2018-04-20 12:31:22 +02:00
zmagod e96b690a5b removes reports link from secondary navigation, fix bug with turbolinks 2018-04-20 11:57:52 +02:00
Zmago Devetak 76c4202664
Merge pull request #1110 from ZmagoD/zd_SCI_2311 
fixes controller action in manage_columns
 2018-04-20 10:36:31 +02:00
zmagod dafa29d4bf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2124 2018-04-20 10:33:15 +02:00
zmagod 74f23ee461 fixes controller action in manage_columns 2018-04-20 09:53:15 +02:00
mlorb 3249d5db0d
Merge pull request #1100 from mlorb/ml-sci-2303 
Update reports show page to work with new navigation [SCI-2303]
 2018-04-20 09:50:35 +02:00
Zmago Devetak 93fc1af12d
Merge pull request #1083 from ZmagoD/zd_SCI_2259 
set limit on maximum number of dropdown list items [fixes SCI-2259]
 2018-04-19 17:17:54 +02:00
Zmago Devetak 1290435372
Merge pull request #1086 from ZmagoD/zd_SCI_2207 
enables copying of repository items [fixes SCI-2207]
 2018-04-19 17:13:43 +02:00
zmagod ce52eb851b add validation to dropdown items 2018-04-19 14:02:42 +02:00
zmagod 9d282d1800 adds new reports index page [fixes SCI-2124] 2018-04-18 16:47:52 +02:00
mlorb cc34376253 update reports show page to work with new navigation 2018-04-18 14:40:53 +02:00
mlorb 600ec99c82 fix project navigation to work with archived pages and correct current team 2018-04-17 13:52:43 +02:00
Zmago Devetak f90589d714
Merge pull request #1095 from ZmagoD/zd_SCI_2300 
fixes archive button [fixes SCI-2300]
 2018-04-16 16:19:21 +02:00
Zmago Devetak a0f549e935
Merge pull request #1093 from ZmagoD/zd_SCI_2296 
hides the create new inventory button for non admin users [fixes SCI-…
 2018-04-16 16:18:15 +02:00
mlorb dceef349a4 fix bug and some refectoring 2018-04-16 14:10:49 +02:00
zmagod a2d8285f35 fixes archive button but [fixes SCI-2300] 2018-04-16 09:22:10 +02:00
mlorb 2627efe402 implement file column type when editing & creating new rows in inventories DataTables 2018-04-13 17:21:17 +02:00
zmagod bef166ff30 hides the create new inventory button for non admin users [fixes SCI-2296] 2018-04-13 13:39:58 +02:00
zmagod 4f21833373 changes per @duco 's request 2018-04-13 11:47:33 +02:00
Luka Murn 09c60d2468 Fixes per @Ducz0r's request 2018-04-12 14:38:22 +02:00
Luka Murn 9bf8b5d864 Merge branch 'ok_SCI_1860' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_1860 
Conflicts:
	Makefile
	app/assets/javascripts/projects/index.js.erb
	app/assets/stylesheets/themes/scinote.scss
	config/locales/en.yml
 2018-04-12 13:16:46 +02:00
zmagod 6291857bbf enables copying of repository items [fixes SCI-2207] 2018-04-11 17:17:19 +02:00
zmagod e4b49e62a3 fixes import limit 2018-04-10 15:45:51 +02:00
mlorb a10f671184
Merge pull request #1081 from mlorb/ml-sci-2123 
Refactor settings into the new navigation bar [SCI-2123]
 2018-04-09 13:21:16 +02:00
mlorb 80fe1dd73b fix travis 2018-04-06 17:16:04 +02:00
Zmago Devetak bdb6554870
Merge pull request #1049 from ZmagoD/zd_SCI_2218_2219 
adds manage columns page
 2018-04-06 17:06:28 +02:00
zmagod cf7761daaa Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into ok_SCI_2223 2018-04-06 12:56:39 +02:00
mlorb b8e91e91a1 refactor settings into the new navigation bar 2018-04-05 16:30:02 +02:00
zmagod 515c95061c fixes delete column action 2018-04-05 09:56:09 +02:00
zmagod a8a19df06d Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-05 08:51:58 +02:00
zmagod 0c05c60ebf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-04-04 16:06:38 +02:00
Oleksii Kriuchykhin 3b7977ee3b Merge latest changes from ux-release-1 [SCI-2217] 2018-04-04 14:20:34 +02:00
zmagod 38b84edfb0 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-04-04 12:59:41 +02:00
Oleksii Kriuchykhin d8d2d75631 Fix repository rows permissions [SCI-2265] 2018-04-02 20:48:44 +02:00
Oleksii Kriuchykhin 51860652c1 Refactor smart annotations modal [SCI-2223] 2018-04-02 20:38:56 +02:00
okriuchykhin 5e0cf58bc5
Merge pull request #1058 from okriuchykhin/ok_SCI_2111 
Implement search in file repository cells and improve performance [SCI-2111]
 2018-03-30 12:39:47 +02:00
Oleksii Kriuchykhin cc5d8550b1 Refactor file preview modal [SCI-2217] 2018-03-30 11:50:28 +02:00
zmagod 56b0900619 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2218_2219 2018-03-29 16:42:10 +02:00
zmagod 7c1390ece2 implement sidebar toggle [fixes SCI-2232] 2018-03-28 14:12:11 +02:00
Luka Murn c07dc98cc8 Fix Office Online editing of files [SCI-2264] 
Office Online files could not be edited. I believe the reason
was that in Rails 5.1, `render nothing: true` was removed. So
I replaced this in `wopi_controller` with `render body: nil`.
Hopefully this will do the trick.

Closes SCI-2264.
 2018-03-28 13:22:30 +02:00
okriuchykhin fc06f8c60b
Merge pull request #1055 from okriuchykhin/ok_SCI_2250 
Skip asset if file is missing in protocol export [SCI-2250]
 2018-03-26 14:19:49 +02:00
okriuchykhin b1fcdb7474
Merge pull request #1057 from okriuchykhin/ok_SCI_2249 
Fix sample assign permissions [SCI-2249]
 2018-03-26 13:24:38 +02:00
Oleksii Kriuchykhin e42fc3117b Implement search in file repository cells and improve performance [SCI-2111] 2018-03-26 13:19:09 +02:00
zmagod 8f09e1f7a4 Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-03-26 13:08:31 +02:00
zmagod c61efb0624 rename before_acton hook 2018-03-26 13:07:00 +02:00
Oleksii Kriuchykhin aa69624f9f Fix sample assign permissions [SCI-2249] 2018-03-25 20:10:32 +02:00
Oleksii Kriuchykhin ecd3c73772 Skip asset if file is missing in protocol export [SCI-2250] 2018-03-25 13:36:24 +02:00
zmagod baf69461f5 adds edit/create modal and related actions 2018-03-23 16:00:33 +01:00
mlorb bc06542ed7 refactor project navigation 2018-03-22 11:41:33 +01:00
zmagod 3be3c00574 adds manage columns page [fixes SCI-2218] 2018-03-22 09:35:36 +01:00
zmagod 81df97f008 add library sidebar and create new library button [fixes SCI-2121] 2018-03-21 09:22:55 +01:00
zmagod 62858bc14f Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2139_2121 2018-03-20 14:46:11 +01:00
zmagod 1ad8c259d1 add blank page for repositories [fixes SCI-2139] 2018-03-20 14:45:57 +01:00
zmagod c46da5cc67 fixes import protocol bug for guest user [fixes SCI-2197] 2018-03-19 16:10:28 +01:00
Oleksii Kriuchykhin a105e61d48 Remove tutorial [SCI-1860] 2018-03-18 13:18:05 +01:00
zmagod fad4001273 fix edit row action 2018-03-16 12:27:19 +01:00
zmagod 1cdba5e0d3 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2068 2018-03-16 11:05:16 +01:00
zmagod c2eb6d6900 fixes hound adds specs to repository_list_items controller 2018-03-16 10:53:05 +01:00
zmagod d69754af04 implement search on list items dropdown, update, create actions [fixes SCI-2070] 2018-03-15 15:43:16 +01:00
Zmago Devetak f778415321
Merge pull request #1014 from ZmagoD/zd_SCI_2025 
Fix custom repositories export so it supports "list of values" custom column types [fixes SCI-2025]
 2018-03-13 15:20:46 +01:00
Zmago Devetak d7679dcb99
Merge pull request #1032 from ZmagoD/zd_SCI_2141 
refactor global activities in separate page [fixes SCI-2141]
 2018-03-13 15:20:14 +01:00
okriuchykhin 503617b42c
Merge branch 'samples_to_repositories_table_migration' into zd_SCI_2025 2018-03-13 14:44:20 +01:00
zmagod dd2f7dd417 Merge branch 'master' of https://github.com/biosistemika/scinote-web into samples_to_repositories_table_migration 2018-03-13 13:24:36 +01:00
Oleksii Kriuchykhin 269f7d74fa Add explicit ordering to samples_tables [SCI-2148][SCI-2149] 2018-03-13 13:16:34 +01:00