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9945 commits 53 branches 189 tags 169 MiB
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1541 commits

Author SHA1 Message Date
aignatov-bio
4de35c983a
Open HELM files in bio eddie [SCI-5890] (#3442) 2021-07-20 13:06:47 +02:00
Martin Artnik
c43e1cfbe5 Fixed db error during build 2021-07-20 10:20:47 +02:00
artoscinote
3a281ce9dc
Merge pull request #3433 from artoscinote/ma_SCI_5607 
Also send notification to the user that was unassigned from task [SCI-5607]
 2021-07-20 09:41:46 +02:00
artoscinote
5f9c04844f
Added prefixed IDs to repository rows (items) [SCI-5909] (#3441) 
* Added prefixed IDs to repository rows (items) [SCI-5909]

* Fix prefixed id queries to work with joins, use subquery in repository search [SCI-5909]

* Fixed accessing repository_row parent code [SCI-5909]

* Better handling of repository_row code display [SCI-5909]

* Fix index warning for id prefixed models issue setting up project [SCI-5909]
 2021-07-19 14:23:36 +02:00
Martin Artnik
a8f8ab8ba9 Implement label templates with default ZPL template [SCI-5902] 2021-07-19 09:44:14 +02:00
Martin Artnik
96a5b97bdb Implement Save & Register molecule [SCI-5879] 2021-07-15 12:37:04 +02:00
Martin Artnik
1985b7a7e0 Also send task unassign notification to the person that was unassigned [SCI-5607] 2021-07-13 12:11:49 +02:00
zmagoD
277da3abcf fix merge issues 2021-07-10 15:20:55 +02:00
Oleksii Kriuchykhin
549fc8e5a0 Fix repository cell joining and preloading [SCI-5847] 2021-07-07 17:43:51 +02:00
Martin Artnik
fdf9c5f6ae Reset file_processing when new file is upladed [SCI-5870] 2021-07-07 14:57:35 +02:00
Oleksii Kriuchykhin
d1208bad0b Merge branch 'develop' into features/new_permissions 2021-07-07 13:44:36 +02:00
artoscinote
723b594632
Merge pull request #3398 from artoscinote/ma_SCI_5828 
Expose experiment IDs in interface and reports [SCI-5828]
 2021-06-30 12:58:25 +02:00
Martin Artnik
e1b0b65465 Improved code style, fixed bug [SCI-5828] 2021-06-29 15:57:23 +02:00
zmagoD
9c812e84bd setup logic to group assign all team members and handle the unassignments logic 2021-06-27 13:22:19 +02:00
Martin Artnik
b2e2186d9f Remove unnecessary tasks hash from full export [SCI-5840] 2021-06-22 14:57:07 +02:00
Martin Artnik
c4e6b0bbaf Fixed export all report html generation [SCI-5840] 2021-06-22 14:50:47 +02:00
Martin Artnik
eaa713f5b8 Fix indices [SCI-5829] 2021-06-22 12:51:25 +02:00
zmagoD
9b87fce840 add read check to view methods 2021-06-20 11:11:03 +02:00
zmagoD
ad10befcc4 add new manage access permission to PET levels 2021-06-19 17:17:57 +02:00
Martin Artnik
29ff910eba Added searching experiments by EX[ID] [SCI-5829] 2021-06-18 14:12:59 +02:00
Martin Artnik
0866a2e251 Added experiment ID to card and table views [SCI-5828] 2021-06-18 14:12:59 +02:00
Oleksii Kriuchykhin
bb458abec6 Remove old reports code [SCI-5650] 2021-06-18 10:40:00 +02:00
Martin Artnik
47071e23a1 Added specs for webhooks 2021-06-17 14:54:30 +02:00
Martin Artnik
4ee50f87d5 Implement webhook service and scheduling jobs [SCI-5801, SCI-5802] 2021-06-17 09:19:04 +02:00
Oleksii Kriuchykhin
85a5cca98a Fix repository snapshots for export all [SCI-5776] 2021-06-16 16:17:12 +02:00
zmagoD
25802d7043 adopt move/clone my module logic to work with new user assignments (SCI-5805) 2021-06-12 18:51:55 +02:00
zmagoD
7128987418 fix code style 2021-06-12 10:58:26 +02:00
zmagoD
7e4f47f667 update experiment and my_module search 2021-06-12 10:27:53 +02:00
zmagoD
8997ba10d1 mark user assigmetns when they are created manually or automatically 2021-06-12 09:36:41 +02:00
aignatov-bio
afe2a19c88
Add webhooks management [SCI-5767] (#3376) 
* Add webhooks managment [SCI-5767]

* Markup fixes [SCI-5676]
 2021-06-09 12:53:11 +02:00
Miha Mencin
48202c88d1
Merge pull request #3350 from aignatov-bio/ai-sci-5601-add-pdf-preview-for-docx-report 
Add pdf preview for docx reports [SCI-5601]
 2021-06-09 11:27:45 +02:00
aignatov-bio
16f83a3e60 Remove docx preview processing flag [SCI-5601] 2021-06-09 10:58:27 +02:00
Miha Mencin
46e2adf2e3
Merge pull request #3334 from okriuchykhin/ok_SCI_5730 
Improve filtering for inventories [SCI-5730]
 2021-06-09 09:50:56 +02:00
Oleksii Kriuchykhin
16bad9eb9c Fix export all functionality [SCI-5776] 2021-06-08 14:21:34 +02:00
zmagoD
ddaa4b4c57 replase user_projects with user_assignment where the permissions are calculated 2021-06-06 10:29:01 +02:00
zmagoD
784e43e328 create user_assignments for all child objects when the user is attached to the project 2021-06-06 09:54:47 +02:00
aignatov-bio
3c7592657c Add activity filters [SCI-5765] 2021-05-31 13:39:10 +02:00
zmagoD
debff7bc85 fix code style 2021-05-29 19:25:46 +02:00
Alex Kriuchykhin
6d56ea2ee0
Merge pull request #3358 from okriuchykhin/ok_SCI_5773 
Remove experiment from report if it is moved to another project [SCI-5773]
 2021-05-28 14:02:30 +02:00
Alex Kriuchykhin
cdbcbd0409
Merge pull request #3357 from okriuchykhin/ok_SCI_5751 
Fix deletion of old reports [SCI-5751]
 2021-05-28 13:59:36 +02:00
Oleksii Kriuchykhin
cc8cc595d7 Remove experiment from report if it is moved to another project [SCI-5773] 2021-05-28 11:31:45 +02:00
Oleksii Kriuchykhin
70f0535dbd Fix deletion of old reports [SCI-5751] 2021-05-27 16:31:58 +02:00
aignatov-bio
24f4f6cbb2 Fix report experiments sorting [SCI-5762] 2021-05-27 12:44:45 +02:00
aignatov-bio
2be59bf8b2 Add pdf preview for docx reports [SCI-5601] 2021-05-25 15:14:50 +02:00
Miha Mencin
e675e4004e
Merge pull request #3348 from aignatov-bio/ai-sci-5753-fix-export-all 
Fast fix for export all [SCI-5753]
 2021-05-24 15:19:11 +02:00
aignatov-bio
2651e8ff35 Fast fix for export all [SCI-5753] 2021-05-24 13:16:43 +02:00
zmagoD
300c1521fd add new API endpoints and fix/update ExperimentMember and MyModuleMember modules 2021-05-22 18:36:30 +02:00
zmagoD
be94cb09c2 fix code style 2021-05-22 14:41:56 +02:00
zmagoD
67cf09e030 log activities on experiment and my_module assignment change 2021-05-22 13:59:27 +02:00
Oleksii Kriuchykhin
64ce35c8da Refactor DOCX report generator [SCI-5735] 2021-05-21 16:40:38 +02:00
Oleksii Kriuchykhin
29c83ffbb1 Merge branch 'develop' into features/new-reports 2021-05-21 11:04:17 +02:00
Oleksii Kriuchykhin
7d9a79456a Remove task from report if it is moved to another experiment [SCI-5741] 2021-05-20 21:21:27 +02:00
Oleksii Kriuchykhin
0ff1277dbf Improve filtering for inventories [SCI-5730] 2021-05-19 22:48:52 +02:00
aignatov-bio
0b97ffe5c6 xRemove default value from pdf/docx_file_status [SCI-5728] 2021-05-18 15:24:13 +02:00
Miha Mencin
491dc22294
Merge pull request #3321 from okriuchykhin/ok_SCI_5724 
Fix default empty options for report wizard first page [SCI-5724]
 2021-05-17 10:28:57 +02:00
Miha Mencin
d952edd389
Merge pull request #3316 from okriuchykhin/ok_SCI_5702 
Add generation error states to reports [SCI-5702]
 2021-05-17 10:16:06 +02:00
zmagoD
c23c01c01c remove user projects enpoints, fix the role name display 2021-05-16 12:03:16 +02:00
zmagoD
de4c28069a fix experiment level styling issues and update the dropdown placeholerds 2021-05-16 11:04:04 +02:00
Oleksii Kriuchykhin
167ebd3d58 Fix default selection of results in reports wizard [SCI-5726] 2021-05-13 15:44:06 +02:00
Oleksii Kriuchykhin
697809ff6a Fix default empty options for report wizard first page [SCI-5724] 2021-05-13 14:24:47 +02:00
aignatov-bio
3ba96be787 Remove report name uniqness [SCI-5718] 2021-05-12 14:56:22 +02:00
Oleksii Kriuchykhin
a175e83a16 Add generation error states to reports [SCI-5702] 2021-05-11 14:52:02 +02:00
zmagoD
5ee38966a0 Merge branch 'features/new_permissions' of https://github.com/biosistemika/scinote-web into new_perimssions-managing-project-ui 2021-05-11 08:36:39 +02:00
zmagoD
d145dd6d36 add my module assigments modals 2021-05-09 16:59:10 +02:00
zmagoD
ac91d9c2c4 add assign user permission to experiment level 2021-05-08 18:06:07 +02:00
zmagoD
c0eb38b564 Merge branch 'develop' of https://github.com/biosistemika/scinote-web into features/new_permissions 2021-05-08 10:33:43 +02:00
zmagoD
331a68e9b6 fix new experiment creation 2021-05-08 10:05:22 +02:00
Oleksii Kriuchykhin
b67f2a21f5 Add default settings to existing reports [SCI-5619][SCI-5672] 2021-05-06 17:33:58 +02:00
zmagoD
47cb1b31dc fix code style 2021-05-02 11:36:10 +02:00
zmagoD
c1d98f421d update scenarios and UI logic to handle project page reload after modal close 2021-05-02 11:22:59 +02:00
zmagoD
11e5662c47 add fe logic for disable/enable fields 2021-04-30 13:26:06 +02:00
zmagoD
8a74546cdf fix the logic for addin/editing new project members 2021-04-28 18:02:18 +02:00
Oleksii Kriuchykhin
bca88188de Limit created report relations depth to tasks [SCI-5665] 2021-04-28 15:33:30 +02:00
zmagoD
c136d953d0 create form object for role assigment, create helper object for project member, added new user_projects modal 2021-04-24 18:43:28 +02:00
aignatov-bio
d18a54c874
Update create and update action for reports controller [SCI-5641] (#3260) 
Update create and update action [SCI-5641]
 2021-04-20 13:35:40 +02:00
zmagoD
04ef7a4478 add show and edit permissions modal 2021-04-18 17:19:16 +02:00
zmagoD
3333241c9a add CTA for project members modal SCI-5645 2021-04-18 12:23:29 +02:00
Alex Kriuchykhin
80827ce761
Merge pull request #3257 from biosistemika/SCI-5623-add-external-id-to-user 
SCI-5623 add external id to user
 2021-04-14 16:15:43 +02:00
miha
e610683d5c [SCI-5623] added external_id setting to user 2021-04-14 09:44:09 +02:00
aignatov-bio
101d46956c Add logic for preparing wizard data for report [SCI-5593] 2021-04-12 12:42:22 +02:00
miha
4f7f257b78 Remove cascading save from step 2021-04-12 12:20:05 +02:00
miha
2e45093856 fix a stupid2 2021-04-12 10:31:35 +02:00
miha
b917a0c3e0 fix a stupid 2021-04-12 10:30:37 +02:00
miha
56ebc3dc07 [SCI-5635] add a migration to fix broken steps, fix the api so it sets last_modified_by_id, minor step model refactor 
migration fix

remove the conditoin for set_last_modified_by callback

set the last_modified_by_id in before_save callback (in case it is not set yet)

remove trailing spaces

Set last modified in protocl import service
 2021-04-12 09:59:00 +02:00
Oleksii Kriuchykhin
67302da968 Add settings to reports [SCI-5612] 2021-04-08 17:40:16 +02:00
Oleksii Kriuchykhin
a9ac8452f2 Add dynamic form elements in report wizard step 1 [SCI-5591] 2021-04-06 13:56:24 +02:00
aignatov-bio
82be23db81 Add project and template selector [SCI-5570] 2021-03-31 15:32:03 +02:00
Oleksii Kriuchykhin
2b2b6f7774 Fix for API float parsing in the inventory number type column [SCI-5604] 2021-03-29 15:59:24 +02:00
miha
11284d3b87 [SCI-5577] filter notifications 2021-03-29 09:52:57 +02:00
Oleksii Kriuchykhin
f7c865974d Switch to graphviz gem [SCI-5596] 2021-03-25 17:42:57 +01:00
aignatov-bio
a7d0f5050d Remove project on project restore [SCI-5582] 2021-03-22 15:20:47 +01:00
Oleksii Kriuchykhin
d006b813b9 Add pdf and docx attachments to reports [SCI-5558] 2021-03-15 13:30:03 +01:00
Urban Rotnik
8202181095
Merge pull request #3186 from urbanrotnik/ur-sci-4140-fix-notifications 
Bring back old notifications [SCI-4140]
 2021-03-09 14:54:08 +01:00
Urban Rotnik
ab1477997a Update variables name 2021-03-09 14:50:14 +01:00
Urban Rotnik
96ef0c10da
Merge pull request #3148 from urbanrotnik/ur-sci-5450-remamber-user-view-mode 
Store Table/Cards view setting per user [SCI-5450]
 2021-03-08 11:48:33 +01:00
aignatov-bio
df4297f6f7 Merge branch 'develop' into features/local_file_previews 2021-03-08 11:30:47 +01:00
Urban Rotnik
235f19cf25 Store Table/Cards view setting per user 
SCI-5450
 2021-03-04 14:56:59 +01:00
Oleksii Kriuchykhin
2b5709e75f Improve behavior of the scheduler, add caching to system notifications sync service [SCI-5526] 2021-03-02 17:28:07 +01:00
Oleksii Kriuchykhin
d8cffe53c7 Add migration for new user assignments to projects [SCI-5478] 2021-03-01 14:28:21 +01:00
aignatov-bio
0c5a1a3e21 Fix tests [SCI-5528] 2021-02-26 16:29:56 +01:00