scinote-eln/scinote-web
1
1
Fork 0
mirror of https://github.com/scinote-eln/scinote-web.git synced 2024-09-21 15:36:22 +08:00
Code Issues Packages Projects Releases Wiki Activity
5489 commits 70 branches 179 tags 165 MiB
Commit graph

788 commits

Author SHA1 Message Date
Mojca Lorber 0adb8b2b61 Fix failing tests 2019-02-13 14:31:26 +01:00
aignatov-bio 5c85595ab4
System Notifications - View All Page [SCI-2956 and SCI-3001] (#1482) 
* System notification view and notification partial (SCI 2956 and SCI 3001)
 2019-02-13 13:06:14 +01:00
Oleksii Kriuchykhin fdff69f22e Add comment for Tika start up code [SCI-2967] 2019-02-07 11:06:25 +01:00
Oleksii Kriuchykhin 13c4bd25af Optionally disable Tika background mode through env variable [SCI-2967] 2019-02-04 16:47:29 +01:00
mz3944 a315808d58
Merge pull request #1473 from mz3944/mz-SCI-2918 
In html project export there is formula instead of result in table [SCI-2918]
 2019-02-01 04:49:14 +01:00
Urban Rotnik 8ebb7561d9 Add last_time_changed_at columnd to SystemNotifications 2019-01-31 16:44:20 +01:00
Matej Zrimšek ac78c7d21b Process Handsontable formulas in project HTML files in team export [SCI-2918] 2019-01-31 07:39:17 +01:00
Urban Rotnik 6f7fcb0831 Refactor method clone_experiment_as_template into service object 
[SCI-2925]
 2019-01-31 07:13:40 +01:00
Oleksii Kriuchykhin cc92de3726 Merge latest features/templates [SCI-2939] 2019-01-30 10:43:54 +01:00
Urban Rotnik 3e2c9934d0 Add SystemNotification model 
- SystemNotifiction model with spec
- UserSystemNotification model for many-many association
 2019-01-29 11:40:26 +01:00
Urban Rotnik 4cf12d12d1 Refactor 'move_experiment' method into service object 
Jira Ticket: SCI-2926
 2019-01-28 11:45:36 +01:00
Oleksii Kriuchykhin 05edfae766 Fix failing tests [SCI-2939] 2019-01-25 14:13:00 +01:00
Urban Rotnik 247bae8a9f Refactor export_all_counter increasing/reseting logic 
- Remove daily task
- Add method to user Model
 2019-01-25 11:16:31 +01:00
Oleksii Kriuchykhin bd2efa55ac Add templates business logic [SCI-2939] 2019-01-25 10:55:08 +01:00
Mojca Lorber fa1dff6352 refactor Demo project generation 2019-01-24 13:40:53 +01:00
mz3944 f6c8af105d
Merge pull request #1434 from mz3944/mz-SCI-2903 
Fix (unite) Date and Time display formats [SCI-2903]
 2019-01-21 09:50:34 +01:00
Urban Rotnik f1d59e65f3 Add module and rename service object 2019-01-18 16:56:33 +01:00
Urban Rotnik 47cc6a9d10 Refactor workflow_image_generation and move to service class 2019-01-18 16:56:33 +01:00
Urban Rotnik 686f10cbd0 Refactor instance method 'ordered_modules' to scope 2019-01-18 16:56:33 +01:00
Urban Rotnik 1b70f42817 Refactor 'Experiment.modules_without_group' to Module's scope 2019-01-18 16:54:00 +01:00
Oleksii Kriuchykhin e62e1873b0 Fix issue with caching in inventories dropdown [SCI-2776] 2019-01-17 15:04:20 +01:00
Oleksii Kriuchykhin 4f9eb7e165 Fix binary files in Export All archive [SCI2950] 2019-01-16 17:07:05 +01:00
Oleksii Kriuchykhin 534866467b Add counters to task inventories dropdown [SCI-2776] 2019-01-03 14:11:00 +01:00
Matej Zrimšek b74105abc2 Fix Date and Time display formats 2018-12-23 20:30:09 +01:00
Luka Murn 1c8407e4f4
Merge pull request #1433 from okriuchykhin/ok_SCI_2864 
Additional fix for export all S3 path [SCI-2864]
 2018-12-20 13:27:50 +01:00
Oleksii Kriuchykhin 2fa4f42883 Additional fix for export all S3 path [SCI-2864] 2018-12-20 13:22:56 +01:00
Luka Murn faf6601962
Merge pull request #1432 from okriuchykhin/ok_SCI_2864 
Fix S3 zip exports path [SCI-2864]
 2018-12-20 11:08:48 +01:00
Oleksii Kriuchykhin c880f3fd84 Fix S3 zip exports path [SCI-2864] 2018-12-20 11:07:19 +01:00
Luka Murn 8935e4c7c1
Merge pull request #1426 from Ducz0r/lm-add-queue-to-export-all-jobs 
Add team_zip_export job queue to export all delayed jobs
 2018-12-16 22:16:10 +01:00
Alex Kriuchykhin abdf64a8c7
Merge pull request #1420 from okriuchykhin/ok_SCI_2894 
Replace reports materialized view with normal queries and re-enable fragment caching [SCI-2894]
 2018-12-16 19:44:50 +01:00
Luka Murn 7ba9628cfb Add team_zip_export job queue to export all delayed jobs 2018-12-13 18:40:56 +01:00
Oleksii Kriuchykhin 311189a2e9 Replace reports materialized view with normal queries and re-enable fragment caching [SCI-2894] 2018-12-13 11:18:09 +01:00
Luka Murn 3d7b633c25 Hound is love, Hound is life 2018-12-12 14:03:16 +01:00
Luka Murn 24af108e98 Change PDF in export all to HTML 2018-12-12 11:15:16 +01:00
Alex Kriuchykhin 51ba74cbab
Merge pull request #1403 from okriuchykhin/ok_SCI_2757 
Enable caching for navigation sidebar [SCI-2757]
 2018-12-10 14:11:05 +01:00
Matej Zrimšek 9480234682 Show all smart annotations when they contain special characters [SCI-2816] 2018-12-09 11:15:31 +01:00
Alex Kriuchykhin 9621f0b372
Merge pull request #1408 from okriuchykhin/ok_SCI_2802 
Search for IDs on inventory table as text [SCI-2802]
 2018-12-03 11:39:57 +01:00
Oleksii Kriuchykhin 2c0927b254 Search for IDs on inventory table as text [SCI-2802] 2018-11-30 15:32:01 +01:00
Oleksii Kriuchykhin bf3c7e7840 Fix search across reports, search all readable projects [SCI-2823] 2018-11-30 11:46:13 +01:00
Oleksii Kriuchykhin e43b366cdb Disable fragment caching 2018-11-29 18:07:31 +01:00
Oleksii Kriuchykhin 60a19734b2 Enable caching for navigation sidebar [SCI-2757] 2018-11-29 11:28:36 +01:00
Alex Kriuchykhin c3ef391641
Merge pull request #1380 from okriuchykhin/ok_SCI_2869 
Prevent user being added to project/task multiple times [SCI-2869]
 2018-11-20 22:38:38 +01:00
mz3944 6b996fc000
Merge pull request #1362 from mz3944/mz-SCI-2817 
Export - various small changes/fixes [SCI-2817]
 2018-11-20 21:32:47 +01:00
Oleksii Kriuchykhin 5deaf25fd9 Prevent user being added to project/task multiple times [SCI-2869] 2018-11-20 14:29:33 +01:00
Alex Kriuchykhin a6bc02a2cb
Merge pull request #1369 from okriuchykhin/ok_SCI_2830 
Refactor result and step comments [SCI-2830]
 2018-11-20 00:13:15 +01:00
Alex Kriuchykhin d524a1d508
Merge pull request #1364 from okriuchykhin/ok_SCI_2778 
Add time format selection to settings [SCI-2778]
 2018-11-19 10:17:09 +01:00
Matej Zrimšek dea4ed4e15 Add model name to the archive folders in export-all ZIP structure [SCI-2817] 2018-11-19 04:46:33 +01:00
Luka Murn e9c0b34662 Merge branch 'core-api' into 'master' 
Conflicts:
	Gemfile
	app/services/api.rb
	config/initializers/api.rb
	config/initializers/extends.rb
	config/routes.rb
	db/schema.rb
	spec/controllers/api/api_controller_spec.rb
 2018-11-14 16:59:04 +01:00
Oleksii Kriuchykhin 537de596a7 Merge latest master [SCI-2778] 2018-11-14 13:05:57 +01:00
Oleksii Kriuchykhin 380a96dcce Add caching for step and result fragments [SCI-2830] 2018-11-14 11:57:53 +01:00
mz3944 056efe170b
Merge pull request #1358 from mz3944/mz-SCI-2646 
Removal of the temporary files for export all [SCI-2646]
 2018-11-13 20:31:04 +01:00
Luka Murn 84df2c81f9 Merge branch 'features/export-all' 
Conflicts:
	app/controllers/experiments_controller.rb
	app/controllers/my_modules_controller.rb
	db/schema.rb
 2018-11-13 09:14:02 +01:00
Oleksii Kriuchykhin 8d0dbc7076 Add time format selection to settings [SCI-2778] 2018-11-09 16:19:40 +01:00
Matej Zrimšek 2a5b36b3c2 Fix index/position for export-all folder names [SCI-2817] 2018-11-09 01:21:30 +01:00
Matej Zrimšek 6ff117d662 Fix path creation and construction for export-all [SCI-2817] 2018-11-09 00:44:17 +01:00
Matej Zrimšek f23160ba6d Refactor logic for handling model path in export-all [SCI-2817] 2018-11-08 23:23:23 +01:00
Matej Zrimšek 58b2310d26 Add archived models in corresponding archive directory [SCI-2817] 2018-11-08 23:21:25 +01:00
Matej Zrimšek efb4e0c549 Change indexing in task names in export-all PDF [SCI-2817] 2018-11-08 21:48:09 +01:00
Matej Zrimšek dc91be3749 Preserve task order from project sidebar in export-all file structure [SCI-2817] 2018-11-08 21:48:09 +01:00
Matej Zrimšek 08396b2101 Make folder and file names more readable for export-all ZIP [SCI-2817] 2018-11-08 21:48:09 +01:00
Matej Zrimšek d65fcdc312 Change datetime to human friendly format for ZIP exports [SCI-2817] 2018-11-08 21:48:09 +01:00
Matej Zrimšek 159f6d1ee2 Minor refactoring of exports [SCI-2646] 2018-11-08 21:39:09 +01:00
Matej Zrimšek b7fdd82409 Ensure temp files deletion after export is done [SCI-2646] 2018-11-08 21:32:07 +01:00
mlorb 4d156080ac fix empty projects page bug and projects tree bug 2018-11-07 13:45:46 +01:00
Oleksii Kriuchykhin 82a11ebca2 Remove duplicate destroy for report [SCI-2834] 2018-11-07 09:55:06 +01:00
Matej Zrimšek 2f6a6072e1 Fix repository ZIP export test to work with enabled workers [SCI-2646] 2018-11-07 06:14:40 +01:00
Matej Zrimšek 8fe0249f45 Fix test for repository ZIP export & return path for ZIP exports [SCI-2646] 2018-11-07 05:04:29 +01:00
Oleksii Kriuchykhin 0e192cc830 Ensure that temporary report is always deleted [SCI-2834] 2018-11-06 09:33:18 +01:00
Matej Zrimšek ee611a45d9 Also remove temp file after other types of ZIP export generation [SCI-2646] 2018-11-04 01:39:16 +01:00
Matej Zrimšek 5defbdd76e Remove temp files after export-all ZIP generation [SCI-2646] 2018-11-04 01:33:50 +01:00
Oleksii Kriuchykhin daaeb385bb Fix permission helpers in delayed export job [SCI-2834] 2018-10-30 14:04:01 +01:00
Alex Kriuchykhin c1d853f7bd
Merge pull request #1344 from okriuchykhin/ok_SCI_2783 
Fix issue with project dropdown caching [SCI-2783]
 2018-10-29 10:56:02 +01:00
mz3944 d733f4e357
Merge pull request #1346 from mz3944/mz-SCI-2787 
In project list table table is not updated when archiving/restoring project [SCI-2787]
 2018-10-28 14:36:17 +01:00
Oleksii Kriuchykhin 9ad2718f32 Fix project index endpoint permission bug [SCI-2818] 2018-10-26 16:46:01 +02:00
Alex Kriuchykhin 802290df8b
Merge pull request #1343 from okriuchykhin/ok_SCI_2826 
Skip missing files in assets [SCI-2826]
 2018-10-26 14:23:23 +02:00
Alex Kriuchykhin f581829357
Merge pull request #1339 from okriuchykhin/ok_SCI_2804 
Fix relative links to files in export all PDF [SCI-2804]
 2018-10-26 10:57:04 +02:00
Oleksii Kriuchykhin 641d74829a Fix issue with project dropdown caching [SCI-2783] 2018-10-24 17:52:40 +02:00
Oleksii Kriuchykhin 744ad5b196 Skip missimg files in assets [SCI-2826] 2018-10-24 14:58:59 +02:00
Oleksii Kriuchykhin 990d3a34ca Fix link to inventory CSV file [SCI-2804] 2018-10-24 12:59:04 +02:00
Matej Zrimšek 18e52e2c6f Fix fetching all user projects [SCI-2787] 2018-10-24 00:29:30 +02:00
Oleksii Kriuchykhin 83566cc9d5 Fix relative links to files in export all PDF [SCI-2804] 2018-10-19 16:25:43 +02:00
Oleksii Kriuchykhin 02f536cd08 Merge latest features/export-all [SCI-2733] 2018-10-16 17:20:19 +02:00
Jure Grabnar c13e7531ea Change generate_team method name 2018-10-16 11:13:01 +02:00
Jure Grabnar d50f56e319 Disable/enable export proejct button 
Fix filesystem saving
 2018-10-16 11:01:58 +02:00
Jure Grabnar 6b47165ac1 Fix formatting according to Houndbot 2018-10-16 11:00:38 +02:00
Jure Grabnar 2558b7a313 Fix formatting according to HoundBot 2018-10-16 11:00:38 +02:00
Jure Grabnar 26df1e5a98 Add export project modal 
Closes [SCI-2645]
 2018-10-16 11:00:38 +02:00
Jure Grabnar b9bb0db62d
Merge pull request #1314 from mz3944/mz-SCI-2752 
Render SciNote tables within exported PDF as using HTML Tables [SCI-2752]
 2018-10-15 10:03:42 +02:00
Jure Grabnar ab71471a49 Fix inventories attachment/CSV file path 2018-10-15 08:55:00 +02:00
Matej Zrimšek ef5bf42fc2 Refactor table styling for export all PDF; remove 'min-width' from table cells to also display bigger tables nicely 2018-10-15 08:00:04 +02:00
Matej Zrimšek 7fe6837206 Style tables in export all PDF (in same way as in PDF reports) [SCI-2752] 2018-10-15 07:59:28 +02:00
Matej Zrimšek 97e6fe34a1 Add unstyled tables to the export all PDF [SCI-2752] 2018-10-15 07:58:44 +02:00
Matej Zrimšek 46da1e6b7d Fix handling relative URLs in export all PDF after rebase; minor refactoring [SCI-2641] 2018-10-15 07:13:41 +02:00
Matej Zrimšek 9fb5520970 Refactor/match exported filenames in export all PDF [SCI-2641] 2018-10-15 05:54:19 +02:00
Matej Zrimšek 17380ba0ca Refactoring rebased code [SCI-2641] 2018-10-15 01:12:25 +02:00
Matej Zrimšek 1bf16537f6 Add PDF content to the export all ZIP [SCI-2641] 2018-10-14 23:56:10 +02:00
Matej Zrimšek 48a6a64502 Move PDF generation and export logic of export all PDF to the model 2018-10-14 22:52:54 +02:00
Oleksii Kriuchykhin 1cafbd8c50 Move generic code to Viewable Concern [SCI-2733] 2018-10-12 16:14:24 +02:00
Oleksii Kriuchykhin f221d71bbc Fix datatables state restore [SCI-2733] 2018-10-12 15:15:43 +02:00
Matej Zrimšek e242e9a516 Refactor export all PDF content generation [SCI-2641] 2018-10-12 07:40:22 +02:00
Matej Zrimšek a16d16bc5b Move export all report business logic to model [SCI-2641] 2018-10-12 07:40:21 +02:00
Matej Zrimšek 5ce94b5ecd Remove dynamically created export all report after it's no longer needed 2018-10-12 07:40:21 +02:00
Matej Zrimšek b15cc66b2f Add export project PDF for dummy project 2018-10-12 07:40:21 +02:00
Oleksii Kriuchykhin af02f29fb5 Implement user state saving for projects overview [SCI-2733] 2018-10-10 16:15:31 +02:00
Jure Grabnar d7c875135e
Merge pull request #1304 from jbargu/jg_zipfile_structure 
Create zipfile structure for export all, implement inventory CSV for export [SCI-2640] [SCI-2642] [SCI-2643] [SCI-2644]
 2018-10-05 15:36:56 +02:00
Oleksii Kriuchykhin 0c452f519d Add CRUD endpoints for inventory cells [SCI-2765] 2018-10-05 00:18:42 +02:00
Jure Grabnar 553ac4c360 Refactor code according to PR review 
PR review: https://github.com/biosistemika/scinote-web/pull/1304

Closes: [SCI-2640], [SCI-2642], [SCI-2643], [SCI-2644].
 2018-09-30 16:37:18 +02:00
Oleksii Kriuchykhin 2508394924 Refactor Projects view - cards view [SCI-2730] 2018-09-27 10:43:44 +02:00
Alex Kriuchykhin 112343e65d
Merge pull request #1311 from okriuchykhin/ok_SCI_2738 
Improve delayed jobs for TempFile deletion and Asset text extraction [SCI-2738]
 2018-09-25 11:49:19 +02:00
Luka Murn 2396149c57
Merge pull request #1273 from Zanz2/zz_tooltip_settings_enable_sci2663 
Added toggle checkbox for tooltips help in prefferences [SCI-2663]
 2018-09-24 16:23:28 +02:00
Jure Grabnar 6106904460 Format according to Houndbot #5 2018-09-23 12:07:53 +02:00
Jure Grabnar 90b220ddda Format according to Houndbot #4 2018-09-23 12:06:06 +02:00
Jure Grabnar 970341e7d7 Format according to Houndbot #3 2018-09-23 11:56:23 +02:00
Jure Grabnar a3d7d37081 Format according to Hound bot #2 2018-09-23 11:30:20 +02:00
Jure Grabnar 64a6ed7ffe Format according to houndbot 2018-09-23 11:14:59 +02:00
Oleksii Kriuchykhin 7f7ece2be0 Improve delayed jobs for TempFile deletion and Asset text extraction [SCI-2738] 2018-09-21 17:46:18 +02:00
Oleksii Kriuchykhin 84428b37c2 Add project view JSON endpoints [SCI-2728] 2018-09-21 10:39:20 +02:00
Oleksii Kriuchykhin 4ee9eb3134 Improve search speed on files and inventories [SCI-2739] 2018-09-17 17:06:47 +02:00
Jure Grabnar d40096f663 Remove typo and add hyperlink to inventories 2018-09-16 23:45:38 +02:00
Jure Grabnar f8b1db7f72 Fix repository export and relative hyperlinks 2018-09-16 23:01:44 +02:00
Jure Grabnar 06eaafd118 Suffix should append to basename first and then extension 2018-09-16 20:57:37 +02:00
Jure Grabnar 449aa12070 Refactor TeamZipExport code (move it into special file) 2018-09-16 20:28:26 +02:00
Oleksii Kriuchykhin 49e788a9ad Mergre latest core-api [SCI-2515] 2018-09-14 10:24:05 +02:00
Luka Murn cbb5bda7fe Hound is love, Hound is life 2018-09-05 16:42:15 +02:00
Luka Murn 586a442abc Refactor the settings page, rename setting to tooltips_enabled 2018-09-05 16:36:32 +02:00
Zanz2 384371802c fixes travis 2018-08-31 13:12:34 +02:00
Zanz2 1bed2c2a3c Partially fixed according to pull request review, added comments to code review 2018-08-31 12:11:51 +02:00
Jure Grabnar 93bd461a83 Generate table.csv 2018-08-29 00:31:11 +02:00
Jure Grabnar 01d48cf679 Add suffixes to all names 2018-08-29 00:21:17 +02:00
Jure Grabnar 4b0357b392 Add export of Inventories and their assets 2018-08-28 23:22:55 +02:00
Oleksii Kriuchykhin c86063f79e Fix failing tests [SCI-2688] 2018-08-24 15:48:49 +02:00
Oleksii Kriuchykhin c8efa4bffc Add SHOW, UPDATE and DELETE inventory item endpoints [SCI-2688][SCI-2689] 2018-08-24 15:48:49 +02:00
Oleksii Kriuchykhin 490376513b Add inventory item CREATE endpoint [SCI-2687] 2018-08-24 15:36:19 +02:00
Oleksii Kriuchykhin c8abb3d9b8 Add user_identities CRUD endpoints, make API V1 togglable [SCI-2664][SCI-2686] 2018-08-24 15:27:59 +02:00
Jure Grabnar 295c6a9432 Add export all functionality (basic skeleton) 2018-08-21 21:07:45 +02:00
Zanz2 beb1d02914 Made fiew part for toggler, now debugging why checkbox doenst render properly and why it defaults to false always 2018-08-20 15:57:09 +02:00
Oleksii Kriuchykhin ecde634a2c Add OAuth2 provider [SCI-2515] 2018-08-17 13:17:59 +02:00
Oleksii Kriuchykhin 6c59e1e159 Fix failing tests [SCI-2614][SCI-2616][SCI-2617] 2018-08-08 17:01:49 +02:00
Oleksii Kriuchykhin 8d11e03d47 Add read inventories and inventory items endpoints [SCI-2614][SCI-2616][SCI-2617] 2018-08-08 17:01:49 +02:00
okriuchykhin 3503eb775b
Merge pull request #1254 from okriuchykhin/ok_SCI_2601 
Fix files search results display [SCI-2601]
 2018-08-02 11:53:02 +02:00
Oleksii Kriuchykhin 563005cf89 Fix files search results display [SCI-2601] 2018-07-26 09:55:18 +02:00
Oleksii Kriuchykhin 0e372af729 Adds API authentication with Azure AD [SCI-2608] 2018-07-24 14:21:33 +02:00
Zanz2 887ddbfce3
Merge pull request #1229 from Zanz2/unify_match_case_sci1324 
Fix protocol names are case insensitive unique [SCI-1324]
 2018-07-17 08:22:03 +02:00
zmagod e654725d9e fixes smart annotation serch queries/dropdown item picker [fixes SCI-2511] 2018-07-06 14:26:20 +02:00
Zanz2 8e42dba7de Found the fix 2018-07-03 08:20:56 +02:00
zmagod db1944cc90 move maximum file size limit to an ENV variable [fixes SCI-2415] 2018-06-19 14:15:14 +02:00
zmagod ed39294733 removes duplicated keywords [fixes SCI-2294] 2018-06-18 12:15:52 +02:00
Oleksii Kriuchykhin e10ed86fa1 Remove result validation [SCI-2376] 2018-06-13 14:06:55 +02:00
zmagod f8ac083d39 adds an additional check if some other user has added/removed repository columns [fixes SCI-2408] 2018-06-12 15:28:03 +02:00
Zmago Devetak eff68aead8
Merge pull request #1193 from ZmagoD/zd_SCI_2481_ 
fixes project validation message [fixes SCI-2481]
 2018-06-08 14:40:27 +02:00