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1919 commits

Author SHA1 Message Date
Matej Zrimšek 57b6b9402d Experiment description is inside of box for every supported browser. [fixes SCI-860] 2017-04-18 16:44:01 +02:00
Luka Murn 6a7e383316 Please the Hound 2017-04-18 15:38:11 +02:00
mz3944 0ebf294844 Merge pull request #562 from mz3944/mz-SCI-1187 
Added general locale for cases when a name is optional and is not spe…
 2017-04-18 15:26:35 +02:00
Matej Zrimšek a889174938 Name of result tables should be nil, as it can't be specified. [fixes SCI-1187] 2017-04-18 15:08:13 +02:00
okriuchykhin 3d805d529d Merge pull request #554 from okriuchykhin/ok_SCI_877 
Add image preview to protocol repository [SCI-877]
 2017-04-18 08:58:39 +02:00
Oleksii Kriuchykhin 4fac6484b5 Hide office edit buttons in protocol preview and fix image preview in protocol edit [SCI-877] 2017-04-14 16:05:35 +02:00
Zmago Devetak e1a30cc17c Merge pull request #558 from ZmagoD/zd_SCI_1192 
fixes broken users search method for smart annotation [fixes SCI-1192]
 2017-04-14 15:38:33 +02:00
zmagod 8af3858209 fix hound 2017-04-14 11:13:58 +02:00
Luka Murn 9c28608fbf Fix encoding when cloning tables 
Closes SCI-1175.
 2017-04-13 17:00:27 +02:00
zmagod 9ee971c24b fixes broken users search method for smart annotation [fixes SCI-1192] 2017-04-13 16:14:12 +02:00
Zmago Devetak cb1ad9e0be Merge pull request #555 from ZmagoD/zd_SCI_1103 
adds additional explanations [fixes SCI-1103]
 2017-04-13 15:15:08 +02:00
zmagod 0987cf8abc fixes hound alerts 2017-04-13 14:55:18 +02:00
Zmago Devetak 40af0df882 Merge pull request #551 from ZmagoD/zd_SCI_1189 
fixes the user_name field in csv export [fixes SCI-1189]
 2017-04-13 14:36:44 +02:00
zmagod a6183af63d fix method_missing again 2017-04-13 14:34:58 +02:00
mlorb ddc0e86c92 Merge pull request #556 from mlorb/ml_sci_1174 
Fix bug with changing user own role from admin to normal user [SCI-1174]
 2017-04-13 14:33:58 +02:00
Zmago Devetak ec60044949 Merge pull request #548 from ZmagoD/zd_SCI_1129_v2 
Disables annimateSpiner in result assets actions
 2017-04-13 14:06:50 +02:00
zmagod 0534bce1ed adds super in method_missing 2017-04-13 14:03:56 +02:00
zmagod 241af0620a fixes hound alerts 2017-04-13 13:27:43 +02:00
zmagod b6daf2648b refactor zip_export 2017-04-13 13:01:05 +02:00
zmagod f104444a0c adds additional explanations [fixes SCI-1103] 2017-04-12 16:56:47 +02:00
Mojca Lorber 27c661d7c4 fix bug with changing user own role from admin to normal user 2017-04-12 16:56:10 +02:00
Oleksii Kriuchykhin 181d981a51 Add image preview to protocol repository [SCI-877] 2017-04-12 16:05:38 +02:00
mlorb 2932052628 Merge pull request #549 from mlorb/ml_sci_1172 
Fix overlapping text in audit trail table [SCI-1172, SCI-1181]
 2017-04-12 15:10:48 +02:00
okriuchykhin 0fe84c4e24 Merge pull request #550 from okriuchykhin/ok_SCI_1157 
Improve speed of search [SCI-1157]
 2017-04-12 13:11:26 +02:00
Zmago Devetak 9c31239318 Merge pull request #552 from biosistemika/release-1.9.0 
Release 1.9.1
 2017-04-12 13:08:37 +02:00
zmagod f4fdb840d8 fixes the user_name field in csv export [fixes SCI-1189] 2017-04-12 09:05:54 +02:00
Oleksii Kriuchykhin 07d658ab82 Improve speed of search [SCI-1157] 2017-04-11 14:55:44 +02:00
Mojca Lorber b09c18a9bc fix overlaping text in audit trail table 2017-04-11 14:29:31 +02:00
zmagod 929d8aab5e disables annimateSpiner in result assets actions 2017-04-10 15:40:36 +02:00
Zmago Devetak 91793c295a Merge pull request #542 from ZmagoD/zd_SCI_825 
Smart annotations and Notifications
 2017-04-10 15:10:17 +02:00
zmagod 90faeec410 fixes typos and protocol step links 2017-04-10 11:21:28 +02:00
Zmago Devetak ccb6cd0c8c Merge pull request #546 from ZmagoD/zd_SCI_1185 
adds input_sanitizer helper in app mailer [fixes SCI-1185]
 2017-04-10 09:12:03 +02:00
Luka Murn cd4664e4d0 Merge pull request #544 from Ducz0r/lm-sci-794-fix 
Only require jquery-ui-sortable on samples page [SCI-794]
 2017-04-10 07:44:57 +02:00
mz3944 2c78d10768 Merge pull request #532 from biosistemika/mz-SCI-1150 
Fixed so that file deletion callbacks are triggered
 2017-04-07 15:18:43 +02:00
zmagod 122e638b7e adds input_sanitizer helper in app mailer [fixes SCI-1185] 2017-04-07 15:01:26 +02:00
Luka Murn becdd687a6 Only require jquery-ui-sortable on samples page 
(hopefully) closes SCI-794.
 2017-04-07 13:05:22 +02:00
zmagod 9610c5f5a0 fix info dropdown links [fixes SCI-1141] 2017-04-07 11:31:09 +02:00
Matej Zrimšek 1447a34dc7 Files didn't get deleted in previous commit. [fixes SCI-1150] 2017-04-06 16:59:34 +02:00
okriuchykhin aa776aaa71 Merge pull request #541 from okriuchykhin/ok_SCI_615 
Fix moving of the steps after adding a new one [SCI-615]
 2017-04-06 15:50:01 +02:00
zmagod e77df92017 fix samples_controller 2017-04-06 15:26:24 +02:00
zmagod 9bb1bb3f9b refactor [fixes SCI-825] 2017-04-06 15:08:03 +02:00
zmagod 439cd0cd89 add notification to experiments 2017-04-06 14:55:18 +02:00
zmagod 046b608018 add notification for my_module/project comments 2017-04-06 14:07:22 +02:00
zmagod b398bb7516 add step annotations methods in steps_action concerns 2017-04-06 13:06:20 +02:00
zmagod f16607579f refactor steps annotation 2017-04-06 13:03:13 +02:00
Oleksii Kriuchykhin 5c0197220d Fix moving of the steps after adding a new one [SCI-615] 2017-04-06 12:53:21 +02:00
Matej Zrimšek e72184d10d Fixed so that file deletion callbacks are triggered (and hence audit trails for this is generated). [fixes SCI-1150] 2017-04-06 11:34:03 +02:00
mlorb 4855111dcb Merge pull request #540 from mlorb/ml_sci_1089_v2 
Remove ERROR from message [SCI-1089]
 2017-04-06 10:44:20 +02:00
zmagod bb437bd8c5 adds notification to results annotation 2017-04-06 09:33:49 +02:00
zmagod d331911ffe completed step annotations 2017-04-06 08:42:16 +02:00
mlorb e9441559d3 Merge pull request #538 from mlorb/ml_sci_1044_vol3 
Change helper method for user info popover
 2017-04-05 17:04:30 +02:00
Mojca Lorber 5e62046627 remove ERROR from message 2017-04-05 14:40:55 +02:00
mlorb 7730493ef4 Merge pull request #535 from biosistemika/ml_sci_1044_vol2 
Fix bug with constants
 2017-04-04 15:46:50 +02:00
Mojca Lorber b222a34a97 fix hound 2017-04-04 15:38:16 +02:00
Mojca Lorber a0fe47a05d change helper method for user info popover 2017-04-04 15:22:41 +02:00
okriuchykhin 8cff0a9a5b Merge pull request #534 from okriuchykhin/ok_SCI_1127_v2 
Add user popover method for users [SCI-1127]
 2017-04-04 14:36:16 +02:00
zmagod 99c116f257 first run 2017-04-04 09:19:43 +02:00
Mojca Lorber 715fafe58c fix bug with constants 2017-04-03 17:07:58 +02:00
Oleksii Kriuchykhin 2faa137f67 Add user popover method for users [SCI-1127] 2017-04-03 15:10:00 +02:00
zmagod e1ee53eeb5 generates query in background worker 2017-04-03 13:37:54 +02:00
mlorb 317739af1e Merge pull request #530 from biosistemika/ml_sci_1044 
Add data-hook and yadcf-filter plug-in [SCI-1044]
 2017-03-31 14:00:23 +02:00
Mojca Lorber a2c1ed6994 fix constants 2017-03-31 13:53:18 +02:00
Mojca Lorber 503ee5b62e change place of data-hook 2017-03-30 17:21:29 +02:00
Oleksii Kriuchykhin 42ccefe2ce Remove logs table and old unused logging code [SCI-1127] 2017-03-30 11:47:57 +02:00
Mojca Lorber 9458f391e5 add data-hook and yadcf-filter plug-in 2017-03-29 15:59:51 +02:00
Zmago Devetak 2b35b34eb8 Merge pull request #529 from ZmagoD/zd_SCI_1135 
fixes alert messages in samples [fixes SCI-1135]
 2017-03-29 14:57:11 +02:00
Zmago Devetak 0019fd19ea Merge pull request #525 from ZmagoD/zd_SCI_765 
Export large files - utility class
 2017-03-29 11:55:51 +02:00
zmagod 0096f9dc14 refactor 2017-03-29 09:32:23 +02:00
okriuchykhin 05a49e5a82 Merge pull request #528 from okriuchykhin/ok_SCI_1133 
Fix secondary navigation on Mac [SCI-1133]
 2017-03-29 09:30:34 +02:00
zmagod 9ce95470b3 fixes alert messages in samples [fixes SCI-1135] 2017-03-28 15:14:05 +02:00
Oleksii Kriuchykhin 391c5af267 Fix secondary navigation on Mac [SCI-1133] 2017-03-28 14:36:52 +02:00
zmagod 7039420f99 add hook to canvas module actions 2017-03-28 10:43:39 +02:00
zmagod 0996c14449 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_765 2017-03-27 10:41:58 +02:00
zmagod 2235fd3fb7 adds view if download expires 2017-03-27 10:38:28 +02:00
mlorb 3beb179f87 Merge pull request #514 from biosistemika/ml_sci_1089 
Add error messages to sample group/type edit/delete actions [SCI-1089]
 2017-03-27 09:57:32 +02:00
zmagod 239a44c26b change send to public_send 2017-03-24 16:25:50 +01:00
zmagod 4635a3320d Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1003_add_extends 2017-03-24 16:09:28 +01:00
okriuchykhin 71dc6921fb Merge pull request #524 from okriuchykhin/ok_SCI_1046 
Add team_id field to assets and tables [SCI-1046]
 2017-03-24 14:48:16 +01:00
Oleksii Kriuchykhin d2c8e9a395 Set team for assets and tables in generators [SCI-1046] 2017-03-24 14:46:20 +01:00
Zmago Devetak 804fb2fec9 Merge pull request #519 from ZmagoD/zd_SCI_1092_v2 
adds hooks in team switch [fixes SCI-1092]
 2017-03-24 12:56:52 +01:00
zmagod b352ef1600 removed unneeded method 2017-03-24 12:53:33 +01:00
zmagod 023b3213e8 fixes email link [fixes SCI-765] 2017-03-24 12:10:07 +01:00
zmagod 94732c6d18 adds delayed zip generator 2017-03-23 15:45:02 +01:00
Oleksii Kriuchykhin 2edebb282a Add team_id field to assets and tables [SCI-1046] 2017-03-23 10:36:55 +01:00
zmagod 4385c68f5f adds zip_export utility first run 2017-03-21 16:15:11 +01:00
okriuchykhin 33544ec91d Merge pull request #521 from okriuchykhin/ok_SCI_1087 
Move flash message creation JS code to helper method [SCI-1087]
 2017-03-20 15:35:21 +01:00
Zmago Devetak 38299d9f67 Merge pull request #522 from ZmagoD/zd_SCI_1111 
fixes breadcrumbs in office file [fixes SCI-1111]
 2017-03-20 13:53:29 +01:00
zmagod d8955d1a78 fixes breadcrumbs in office file [fixes SCI-1111] 2017-03-20 13:48:45 +01:00
Oleksii Kriuchykhin c715902058 Move flash message creation JS code to helper method [SCI-1087] 2017-03-17 17:58:53 +01:00
Mojca Lorber 83fa8570d7 refactoring 2017-03-17 17:52:15 +01:00
zmagod c244e69e81 fixed report comments bug [fixes SCI-1100] 2017-03-17 16:59:40 +01:00
zmagod 5cc6cd094e refactor 2017-03-17 16:47:58 +01:00
zmagod 95a0f596b7 adds file link 2017-03-17 16:40:57 +01:00
zmagod 70f17a924e adds hooks in team switch [fixes SCI-1092] 2017-03-17 16:10:22 +01:00
zmagod 52878e0989 fixed wopi buttons [fixes SCI-1110] 2017-03-16 15:38:11 +01:00
zmagod 307fef17d8 fixes owner id if empty 2017-03-15 18:01:15 +01:00
Zmago Devetak 1afb4c9a42 Merge pull request #515 from ZmagoD/file_owner_id_bug 
fixes bug with wopi contorller
 2017-03-15 17:40:07 +01:00
zmagod c5156f5ca3 fixes bug with wopi contorller 2017-03-15 17:33:36 +01:00
Mojca Lorber 4792bd87b9 fix error message when editing custom column on locked task 2017-03-15 14:09:44 +01:00
Mojca Lorber 7a4e3201e7 add error messages to sample group/type edit/delete actions 2017-03-14 17:32:25 +01:00
zmagod 5d372851d3 fixes reports comment bug [fixes SCI-1100] 2017-03-14 16:24:02 +01:00
zmagod 856a4611c6 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1003_add_extends 2017-03-14 15:58:08 +01:00
zmagod 15b1712a3d fixes bug with organization 2017-03-14 13:29:59 +01:00
zmagod b821fff4a5 adds non breaking space between file name and buttons 2017-03-13 14:14:44 +01:00
zmagod df2abe5d17 fixed typo 2017-03-13 13:51:31 +01:00
zmagod 7b16e5643e fix assets preprocesor for wopi files 2017-03-13 13:20:49 +01:00
zmagod 0c2523beca Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-03-10 16:21:43 +01:00
mlorb 39e1ac4b26 Merge pull request #512 from biosistemika/ml_sci_1074 
Fix permissions for experiment actions [SCI-1074]
 2017-03-10 11:44:27 +01:00
okriuchykhin 2a33391f4b Merge pull request #511 from okriuchykhin/ok_SCI_1090 
Refactoring of the comments using STI [SCI-1090]
 2017-03-10 10:50:43 +01:00
Mojca Lorber 1ba5f1748f fix permissions for experiment actions 2017-03-09 17:45:34 +01:00
Oleksii Kriuchykhin 456934464a Remove unneeded validation calls [SCI-1090] 2017-03-09 17:20:27 +01:00
zmagod 1d42d46c02 fixes bug with step comments 2017-03-09 16:02:52 +01:00
Luka Murn ae96223437 Fix rake db:add_user task 2017-03-09 15:37:15 +01:00
zmagod 3057965940 fix bug with filenames 2017-03-09 11:48:50 +01:00
zmagod 9939d8df06 refactor 2017-03-09 10:51:54 +01:00
Luka Murn 1e3a697a91 Merge pull request #508 from biosistemika/lm-sci-838-fix 
Open edit/view Office files in new browser tab/window [SCI-838]
 2017-03-09 10:39:16 +01:00
zmagod 49f91184da fixes locals 2017-03-09 09:55:15 +01:00
Luka Murn a4bf5516a5 Merge pull request #505 from Ducz0r/lm-sci-1082-fix 
Minor change [SCI-1082]
 2017-03-09 08:58:14 +01:00
Luka Murn 0e8f5f8e99 Merge branch 'lm-sci-1091-fix' of https://github.com/Ducz0r/scinote-web into Ducz0r-lm-sci-1091-fix 
Conflicts:
	app/views/my_modules/_state_buttons.html.erb
 2017-03-09 08:44:09 +01:00
zmagod f78ef8c82a fixes hound 2017-03-08 14:41:42 +01:00
zmagod 5c2e9a4b04 adds extends and fixes report methods 2017-03-08 14:14:03 +01:00
Luka Murn 800df7a26b Also make button icons work when rendering them via JS 
Closes SCI-1073.
 2017-03-08 13:55:10 +01:00
Oleksii Kriuchykhin 0f8336e5a5 Refactoring of the comments using STI [SCI-1090] 2017-03-08 13:18:20 +01:00
Luka Murn 7c9aa2e476 Hide complete&uncomplete task buttons if user cannot do it 
Closes SCI-1091.
 2017-03-06 16:01:04 +01:00
Luka Murn 86a800a84e Open edit/view Office files in new browser tab/window 
Closes SCI-838.
 2017-03-06 14:12:18 +01:00
Luka Murn 473487faec Add HTML <head><title> to edit, view file pages 
Closes SCI-1049.
 2017-03-06 13:55:07 +01:00
Luka Murn 4ddb139911 Fix padding of state buttons 
Closes SCI-1073.
 2017-03-03 16:36:52 +01:00
Luka Murn 42b773f180 Merge pull request #504 from Ducz0r/lm-sci-1078-fix 
Fix sample type groups edit color script [SCI-1078]
 2017-03-02 13:09:51 +01:00
Luka Murn 043613782e Minor change 2017-03-02 13:04:13 +01:00
Luka Murn 808fdf6744 Merge pull request #502 from Ducz0r/lm-sci-1073-fix 
Fix protocol state buttons a bit [SCI-1073]
 2017-03-02 09:02:52 +01:00
Luka Murn 7a48da2e94 Merge pull request #501 from Ducz0r/lm-sci-1057-fix 
Canvas should now properly work again [SCI-1057]
 2017-03-02 09:01:51 +01:00
Luka Murn 3599537e42 Fix sample type groups edit color script so it works properly now 
Closes SCI-1078.
 2017-03-01 09:09:44 +01:00
Oleksii Kriuchykhin 4868ec5331 Remove task completion duplicated code [SCI-1075] 2017-02-28 17:07:59 +01:00
Luka Murn 3d7f09bde6 Fix protocol state buttons a bit 
Closes SCI-1073.
 2017-02-28 14:35:12 +01:00
Luka Murn 2252b46afc Canvas should now properly work again 
Closes SCI-1057.
 2017-02-28 10:41:55 +01:00
zmagod e1b3dcc2ba adds enum extends to report element part of SCI-1003 2017-02-27 13:53:46 +01:00
Luka Murn fecfc9e41d Merge pull request #498 from biosistemika/release-1.8.1 
Release 1.8.1
 2017-02-23 14:57:30 +01:00
Luka Murn dc89c160be Fix a bug with team page not working from user task modal 2017-02-23 14:45:00 +01:00
Luka Murn 87599dca88 Merge branch 'lm-sci-1026-fix' into release-1.8.1 2017-02-23 13:55:41 +01:00
mlorb a72a072fac Merge pull request #495 from mlorb/ml_sci_948 
Fix report - checklist items are in separate row than checkboxes [SCI-948]
 2017-02-23 10:50:48 +01:00
okriuchykhin 986ad051a1 Merge pull request #496 from okriuchykhin/ok_SCI_873 
Improve image scaling in image preview [SCI-873]
 2017-02-23 09:30:56 +01:00
Oleksii Kriuchykhin cb588ed378 Improve image scaling in image preview [SCI-873] 2017-02-22 16:55:57 +01:00
okriuchykhin d30e149936 Merge pull request #493 from okriuchykhin/ok_SCI_739 
Lower z-index value for notification count icon [SCI-739]
 2017-02-22 16:48:39 +01:00
okriuchykhin 75792cde14 Merge pull request #492 from okriuchykhin/ok_SCI_759 
Add more extensive explanation when project name is already taken [SCI-759]
 2017-02-22 16:25:16 +01:00
Mojca Lorber f84611f558 fix report - checklist items are in separate row than checkboxes 2017-02-22 15:51:26 +01:00
Oleksii Kriuchykhin a326fa374f Lower z-index value for notification count icon [SCI-739] 2017-02-22 14:35:07 +01:00
Zmago Devetak 58f97fdb5b Merge pull request #489 from ZmagoD/zd_SCI_1002_add_hook 
adds hook for lock task action
 2017-02-22 14:24:01 +01:00
Oleksii Kriuchykhin 35b0b33ddf Add more extensive explanation when project name is already taken [SCI-759] 2017-02-22 14:18:48 +01:00
mlorb b65c716b79 Merge pull request #491 from biosistemika/ml_sci_1028_v2 
Fix repeat tutorial is always created on the same team [SCI-1028]
 2017-02-22 13:52:46 +01:00
Mojca Lorber 330fe9c291 fix repeat tutorial is always created on the same team 
Closes SCI-1028.
 2017-02-22 13:43:03 +01:00
mlorb 42e6a99911 Merge pull request #487 from mlorb/ml_sci_1032 
Fix visual bug in edit avatar mode [SCI-1032]
 2017-02-22 10:59:18 +01:00
mlorb 8c111db31a Merge pull request #486 from mlorb/ml_sci_1033 
Fix user has no teams view [SCI-1033]
 2017-02-22 10:58:39 +01:00
zmagod 151dc79a81 adds hook for lock task action 2017-02-21 16:25:50 +01:00
Mojca Lorber ac0988ef32 add data-hooks for remove manage teams button 2017-02-21 15:39:08 +01:00
Mojca Lorber 0fd41e8a6d remove changes on user has no teams view 2017-02-21 15:12:58 +01:00
Oleksii Kriuchykhin 53ba9437b2 Fix circular dependency while loading Settings [SCI-1004] 2017-02-21 14:38:13 +01:00
mlorb ea1711be83 Merge pull request #485 from mlorb/ml_sci_1001 
Add data-hook for E-signature manifestation/display [SCI-1001]
 2017-02-21 14:25:08 +01:00
mlorb 01d9f306a5 change div to span 2017-02-21 14:22:28 +01:00
Mojca Lorber 6b30f097f0 fix visual bug in edit avatar mode 2017-02-21 14:02:42 +01:00
okriuchykhin 95af5001ab Merge pull request #484 from okriuchykhin/ok_SCI_1004 
Add global settings base class [SCI-1004]
 2017-02-21 13:20:24 +01:00
Mojca Lorber 90864a45a0 fix user has no teams view 2017-02-21 13:08:06 +01:00
Oleksii Kriuchykhin 7703db3386 Change implementation of the Settings base class [SCI-1004] 2017-02-21 13:07:10 +01:00
Luka Murn 6f1c19ae2d Fix _user_dropdown.html.erb 2017-02-21 09:27:42 +01:00
Mojca Lorber cb2127ee7f add data-hook for E-signature manifestation/display 2017-02-20 18:03:55 +01:00
okriuchykhin 8e18ff44a6 Merge pull request #479 from okriuchykhin/ok_SCI_999 
Add task complete/uncomplete functionality [SCI-999]
 2017-02-20 15:19:00 +01:00
Oleksii Kriuchykhin 2aba0f46a6 Add global settings base class [SCI-1004] 2017-02-20 15:11:57 +01:00
Luka Murn 573f3c8d42 Merge pull request #483 from Ducz0r/lm-sci-1026-fix 
Fix manage project users modal bug [SCI-1026]
 2017-02-20 08:22:03 +01:00
Luka Murn ce617894c5 Fix manage project users modal bug 
Closes SCI-1026.
 2017-02-16 15:29:58 +01:00
Oleksii Kriuchykhin 4fb5fa79af Move task completion activity and notification creation to separate methods [SCI-999] 2017-02-16 13:36:05 +01:00
Oleksii Kriuchykhin 218e96b1f0 Code style fixes [SCI-999] 2017-02-16 11:45:07 +01:00
Zmago Devetak c963674e49 Merge pull request #482 from ZmagoD/zd_SCI_987_vol2 
fixes bug with user teams table [fixes SCI-987]
 2017-02-15 13:30:25 +01:00
Luka Murn 164bd787e9 Merge pull request #481 from Ducz0r/lm-sci-958-fix 
Team administrators are Viewers of all Projects in Team [SCI-958]
 2017-02-15 10:40:52 +01:00
zmagod 836baa7412 fixes bug with user teams table [fixes SCI-987] 2017-02-15 10:06:21 +01:00
Nbernot 97584aabb3 Updated the lists of office online file extensions 
Extended the list of file extensions that receive office online icons and 'open in' text.
 2017-02-14 16:44:03 +01:00
Luka Murn d097f0dd15 Merge pull request #477 from Ducz0r/lm-sci-928 
Refactor, merge, unify, improve, update, beautify settings page [SCI-928]
 2017-02-13 16:42:57 +01:00
Luka Murn 1b6f50647c Please Hound 2017-02-13 16:40:27 +01:00
Luka Murn b369177d1f Merge pull request #480 from Ducz0r/lm-sci-964-fix 
Fix system notification email links not working bug [SCI-964]
 2017-02-13 16:31:04 +01:00
Oleksii Kriuchykhin f97c20e9b5 Fix hound warnings [SCI-999] 2017-02-13 15:42:28 +01:00
Oleksii Kriuchykhin 78d5cbb223 Add links to task completion notification [SCI-999] 2017-02-13 14:51:21 +01:00
Luka Murn 86be639a7c Please the Hound 2017-02-13 14:20:44 +01:00
Luka Murn 3313d14316 Fix search for administrators and projects 
Closes SCI-958.
 2017-02-13 14:15:53 +01:00
Luka Murn c6ed73bc82 Allow team admins to see all projects, even hidden ones 2017-02-13 13:42:53 +01:00
Luka Murn f93cc89624 Fix system notification email links not working bug 
Closes SCI-964.
 2017-02-10 15:13:33 +01:00
Oleksii Kriuchykhin cf8566df33 Add task complete/uncomplete functionality [SCI-999] 2017-02-10 14:27:20 +01:00
Luka Murn 3eb4faa44b Fix task restore action 
Closes SCI-991.
 2017-02-10 14:08:56 +01:00
Luka Murn 280b7a0e75 Minor fix 2017-02-09 15:10:45 +01:00
Luka Murn 2a9f975c13 Some minor fixes 2017-02-09 14:58:11 +01:00
Luka Murn f7bd62547e Refactor teams settings into its own controllers 2017-02-09 14:37:59 +01:00
Luka Murn 7bee3a4ea0 Move user profile to settings 2017-02-09 11:34:52 +01:00
Luka Murn 5cb3eb5e09 Refactor preferences -> move them to subcontroller, subroute 2017-02-09 11:07:16 +01:00
okriuchykhin c2a69982aa Merge pull request #471 from okriuchykhin/ok_SCI_936 
Adds datatable to all teams page [SCI-936]
 2017-02-07 10:33:33 +01:00
okriuchykhin e2de3c92e7 Merge pull request #472 from okriuchykhin/ok_SCI_984 
Check that user is a member of a team when switching to it [SCI-984]
 2017-02-07 09:36:46 +01:00
okriuchykhin 53ff6a2893 Merge pull request #473 from okriuchykhin/ok_SCI_997 
Fix smart annotation is missing at editing column with smart annotation [SCI-997]
 2017-02-07 09:33:40 +01:00
Oleksii Kriuchykhin 80dbc669d0 Simplify all teams dt definition [SCI-936] 2017-02-06 17:17:48 +01:00
Oleksii Kriuchykhin 449f4479e9 Fix code style issues [SCI-936] 2017-02-06 17:08:20 +01:00
zmagod c99a540eb3 adds hook to team name in the invitation template [fixes SCI-930] 2017-02-03 16:53:42 +01:00
Oleksii Kriuchykhin 916ed2572a Fix smart annotation is missing at editing column with smart annotation [SCI-997] 2017-02-03 16:42:38 +01:00
Oleksii Kriuchykhin cc6b518c7f Check that user is a member of a team when switching to it [SCI-984] 2017-02-03 16:10:37 +01:00
Oleksii Kriuchykhin 62535a01bd Move teams datatable js code into separate file [SCI-936] 2017-02-03 10:44:42 +01:00
Oleksii Kriuchykhin 8b105aa030 Add override hooks [SCI-936] 2017-02-02 23:35:47 +01:00
Zmago Devetak 65bbd81497 Merge pull request #469 from ZmagoD/zd_SCI_929 
Adds hook in user settings navigation
 2017-02-02 15:01:37 +01:00
mlorb 970d99e6e3 Merge pull request #465 from mlorb/ml_sci_937 
Redesign of individual team page [SCI-937]
 2017-02-02 11:15:55 +01:00
mlorb 5510fa7751 rename data-hooks in team view 2017-02-02 10:36:23 +01:00
Oleksii Kriuchykhin db90c5d63b Add datatable to all teams page [SCI-936] 2017-02-02 09:53:59 +01:00
zmagod bb42bd04a5 adds hook in user settings navigation 2017-02-01 17:10:22 +01:00
Mojca Lorber 86351ce17d add data-hooks for billing 2017-02-01 15:01:54 +01:00
Mojca Lorber d3e0eca44e redesign individual team page 2017-02-01 14:44:47 +01:00
Oleksii Kriuchykhin 031741d122 Disable protocols link if user has no teams [SCI-934] 2017-02-01 14:26:51 +01:00
Oleksii Kriuchykhin c119b7c014 Make sciNote work for users without any teams [SCI_934] 2017-02-01 14:16:26 +01:00
Zmago Devetak 5c9954bb89 Merge pull request #450 from ZmagoD/zd_SCI_939 
Refactor "organizations" to "teams"
 2017-02-01 13:12:02 +01:00
okriuchykhin 067b9452a4 Merge pull request #464 from okriuchykhin/ok_SCI_935 
Add config option to enable/disable users registration [SCI-935]
 2017-02-01 09:36:36 +01:00
Luka Murn 059f9cfb25 Merge pull request #468 from biosistemika/hotfix-1.7.2 
Change URLs to sciNote help pages [SCI-978]
 2017-01-31 16:15:39 +01:00
Luka Murn db75231617 Update URLs to sciNote support pages 
Closes SCI-978.
 2017-01-31 15:48:56 +01:00
zmagod be5faad97c fixes hound 2017-01-31 13:33:55 +01:00
Oleksii Kriuchykhin d1e69438de Add config option to enable/disable users registration [SCI-935] 2017-01-30 15:04:02 +01:00
mlorb bc8c4c3c6c Merge pull request #463 from mlorb/ml_sci_965 
Fix step does not save if table is without content [SCI-965]
 2017-01-30 11:08:21 +01:00
Mojca Lorber b291553d01 fix hound 2017-01-27 16:36:03 +01:00
Mojca Lorber d5021fad2c fix step does not save if table is without content 2017-01-27 16:25:11 +01:00
okriuchykhin 9909f9dcff Merge pull request #456 from okriuchykhin/ok_SCI_951 
Fix missing preview images in task and protocol management [SCI-951]
 2017-01-27 14:42:41 +01:00
okriuchykhin c6fe0003f4 Merge pull request #458 from okriuchykhin/ok_SCI_957 
Fix protocol table filtering by keywords [SCI-957]
 2017-01-27 14:19:53 +01:00
okriuchykhin 53e09bd50a Merge pull request #457 from okriuchykhin/ok_SCI_955 
Fix comments re-initialization after edit of the results [SCI-955]
 2017-01-27 11:50:52 +01:00
zmagod e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
zmagod 61b260fb8a fixes bug in protocol management 2017-01-27 11:01:44 +01:00
mlorb 77236f161b Merge pull request #461 from mlorb/ml_sci_952 
Fix bug with avatar in smart annotations [SCI-952]
 2017-01-27 10:08:53 +01:00
Luka Murn 2c3be391a8 Merge pull request #462 from ZmagoD/zd_SCI_962_vol2 
fix edit action
 2017-01-26 17:25:57 +01:00
Luka Murn 36f25e98f1 Merge pull request #459 from okriuchykhin/ok_SCI_943 
Fix RTF toolbar init after eding new step [SCI-943]
 2017-01-26 17:25:41 +01:00
zmagod 30912c514e fix edit action 2017-01-26 17:24:24 +01:00
Mojca Lorber 5bed5f0f4a fix bug with avatar in smart annotations 2017-01-26 17:15:00 +01:00
zmagod cec5f1333d fixes RTE bug for new text results [fixes SCI-962] 2017-01-26 16:54:43 +01:00
Oleksii Kriuchykhin 100cc700c6 Fix RTF toolbar init after eding new step [SCI-943] 2017-01-26 16:37:44 +01:00
Luka Murn 3bf447b0f4 Fix bug where reCaptcha form wasn't working 2017-01-26 16:06:29 +01:00
Oleksii Kriuchykhin 17a53cbd7f Fix protocol table filtering by keywords [SCI-957] 2017-01-26 15:52:46 +01:00
Oleksii Kriuchykhin ff86184b24 Fix comments re-initialization after edit of the results [SCI-955] 2017-01-26 15:24:37 +01:00
Oleksii Kriuchykhin 0f860496a7 Fix image preview after saving of report [SCI-951] 2017-01-26 14:42:14 +01:00
Luka Murn 3e6d11a087 Merge pull request #455 from mlorb/ml_sci_944 
Fix entering new smart anotations [SCI-944]
 2017-01-26 14:06:35 +01:00
Mojca Lorber 13d1cc5171 fix entering new smart anotations 2017-01-26 13:50:32 +01:00
Oleksii Kriuchykhin 08aa882155 Fix generation of image previews after protocol loading from repo [SCI-951] 2017-01-26 13:19:59 +01:00
Luka Murn 0baaf12de3 Re-display images & checkboxes in PDF reports 
Closes SCI-953.
 2017-01-26 10:46:58 +01:00
Luka Murn 8c5a52417c Merge pull request #445 from okriuchykhin/ok_SCI_940 
Refactor smart annotation/auto_link/simple_format rendering [SCI-940]
 2017-01-25 17:49:38 +01:00
okriuchykhin 648d256dff Merge pull request #448 from okriuchykhin/ok_SCI_945 
Fix openning of protocol preview with images [SCI-945]
 2017-01-25 17:27:01 +01:00
okriuchykhin 6610c75bfc Merge pull request #452 from okriuchykhin/ok_SCI_949 
Fix error when referencing deleted sample in SA [SCI-949]
 2017-01-25 17:26:48 +01:00
Oleksii Kriuchykhin c55f3cb99c Add flag to disable simple_format in custom_auto_link [SCI-940] 2017-01-25 17:18:19 +01:00
Oleksii Kriuchykhin 310d8c1920 Refactor smart annotation/auto_link/simple_format rendering [SCI-940] 2017-01-25 17:18:19 +01:00
mlorb bedef297c4 Merge pull request #453 from mlorb/ml_sci_950 
Fix problem with protocol export [SCI-950]
 2017-01-25 17:15:21 +01:00
okriuchykhin 4c0f68ffbd Merge pull request #410 from okriuchykhin/ok_SCI_855 
Improved tooltip handling in samples datatable V2 [SCI-855]
 2017-01-25 16:19:52 +01:00
Mojca Lorber 99a40961fa fix problem with protocol export 2017-01-25 16:12:48 +01:00
Oleksii Kriuchykhin 5fe9261595 Fix error when referencing deleted sample in SA [SCI-949] 2017-01-25 15:54:12 +01:00
zmagod a507bb4d1f hound 2017-01-25 15:40:35 +01:00
zmagod 1220466035 fixing hound 2017-01-25 15:00:14 +01:00
zmagod afd8328e9c rename ortanizations -> teams 2017-01-25 14:22:06 +01:00
Oleksii Kriuchykhin ddd8bcf7b0 Prevent double initialization of popup [SCI-855] 2017-01-25 13:47:01 +01:00
Oleksii Kriuchykhin 96a9857dec Add handling of popups in the end of the table [SCI-855] 2017-01-25 13:47:01 +01:00
Oleksii Kriuchykhin fb49ce8be2 Improved tooltip handling in samples datatable [SCI-855] 2017-01-25 13:47:01 +01:00
Mojca Lorber 6905fc8c08 remove letter f 2017-01-25 13:20:11 +01:00
Oleksii Kriuchykhin 90e4b26c69 Fix openning of protocol preview with images [SCI-945] 2017-01-25 13:06:12 +01:00
zmagod f04a2f663a renamed organizations in config/ 2017-01-25 12:30:11 +01:00
zmagod 8c035a1981 renames organization in assets 2017-01-25 12:12:27 +01:00
okriuchykhin 35b8638598 Merge pull request #446 from okriuchykhin/ok_SCI_902_v2 
Add sanitization of group/type to sample edit [SCI-902]
 2017-01-25 12:05:30 +01:00
zmagod 72e13beee3 renamed organizations in views 2017-01-25 12:01:23 +01:00
Mojca Lorber 2277af534c fix table titles 2017-01-25 11:01:35 +01:00
zmagod a6285f0431 renamed utilities 2017-01-25 10:24:50 +01:00
zmagod 9ae799d52c rename organization/org/Organization to Team in datatables 2017-01-25 09:48:49 +01:00
zmagod 9d90b9b42a rename Organization to Team in models 2017-01-24 17:08:48 +01:00
zmagod c2c5616078 rename Organization to Team in controllers 2017-01-24 17:06:51 +01:00
Oleksii Kriuchykhin fe6d6842c2 Add sanitization of group/type to sample edit [SCI-902] 2017-01-24 16:58:03 +01:00
zmagod 21c2f82582 rename controllers where org/organization 2017-01-24 16:57:14 +01:00
zmagod a193850ae6 rename models where org/organization 2017-01-24 16:34:21 +01:00
Oleksii Kriuchykhin 365eef506c Fixes merge conflicts with smart-annotations branch 2017-01-24 15:20:50 +01:00
okriuchykhin f1483e4cad Merge pull request #444 from okriuchykhin/ok_SCI_902_v2 
Add sanitization to sample groups/types [SCI-902]
 2017-01-24 14:44:55 +01:00
Oleksii Kriuchykhin a04f05eeb3 Add sanitization to sample groups/types [SCI-902] 2017-01-24 14:39:54 +01:00
mlorb 02f314ce60 Merge pull request #443 from mlorb/ml_sci_919_v2 
Remove table of content and customize link target [SCI-919]
 2017-01-24 14:39:47 +01:00
Luka Murn 53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
Mojca Lorber 4dc7998fdd Remove table of content and customize link target 2017-01-24 13:10:01 +01:00
Zmago Devetak 40bf293ec7 Merge pull request #441 from ZmagoD/zd_SCI_924 
adds smart annotation in task comments, refactor smart_annotation_par…
 2017-01-24 11:18:41 +01:00
mlorb 4253e3de2b Merge pull request #439 from mlorb/ml_sci_919 
Remove functionalities from rich text formatting [SCI-919]
 2017-01-24 11:03:34 +01:00
mz3944 34f832d123 Merge pull request #437 from mz3944/mz-sci-913 
Added smart annotations when adding new sample in samples table [SCI-913]
 2017-01-24 11:03:00 +01:00
okriuchykhin 7fa1f3d966 Merge pull request #438 from okriuchykhin/ok_SCI_921 
Remove unneeded HTML scrubber in protocol importer [SCI-921]
 2017-01-24 11:02:43 +01:00
Matej Zrimšek b48e48e100 Prevent sample row in samples datatable from toggling when clicking on smart annotation link. [SCI-913] 2017-01-24 10:56:10 +01:00
zmagod 6e7fa21dd3 adds smart annotation in task comments, refactor smart_annotation_parser method, fix the user popover description [fixes SCI-924] 2017-01-24 10:51:12 +01:00
Matej Zrimšek 2e041d9e81 Added smart annotations when adding new sample in samples table. [SCI-913] 2017-01-24 10:23:26 +01:00
Oleksii Kriuchykhin 2434c73a0c Remove unneeded HTML scrabber in protocol importer [SCI-921] 2017-01-24 09:52:38 +01:00
Mojca Lorber eb40513ada remove functionalities from rich text formatting 2017-01-24 09:44:37 +01:00
Oleksii Kriuchykhin 401b37956b Simplify protocol export start [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin d555ba7905 Add export to protocol management page and code style improvements [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin 14a6705b55 Implemented protocol export through Zip::OutputStream [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin 1abd7fc574 Added xml schemas and zip gem [SCI-742] 2017-01-23 17:34:02 +01:00
Oleksii Kriuchykhin 69f31a62e7 Initial code commit [SCI-742] 2017-01-23 17:33:10 +01:00
Zmago Devetak 674999f987 Merge pull request #436 from ZmagoD/zd_SCI_922 
fixed user without permissions bug [fixes SCI-922]
 2017-01-23 17:25:07 +01:00
zmagod 20cde2654b fixed user without permissions bug [fixes SCI-922] 2017-01-23 10:53:42 +01:00
zmagod 9c3bc8dac7 fixes checklist item user popover bug [fixes SCI-907] 2017-01-23 09:47:04 +01:00
mz3944 fd63a1de12 Merge pull request #432 from mlorb/ml-sci-fix-847 
Add dynamic length for sample type/group field when adding new sample [SCI-847]
 2017-01-20 15:46:34 +01:00
mlorb 2d073c8c04 Merge pull request #430 from mlorb/ml_sci_826 
Display smart annotations in reports [SCi-826]
 2017-01-20 13:49:40 +01:00
Mojca Lorber 8e02c2e025 add locale - fix 2017-01-20 13:37:07 +01:00
mz3944 18a2e4c423 Merge pull request #433 from mz3944/mz-sci-914 
Edit of a sample in sample table does not work
 2017-01-20 13:02:05 +01:00
Zmago Devetak c1e7cc83a7 Merge pull request #434 from ZmagoD/zd_SCI_915 
Text is deleted when entering smart annotation in rich text editor
 2017-01-20 13:01:29 +01:00
Zmago Devetak 7bd368e002 Merge pull request #431 from ZmagoD/zd_add_code_highlight 
Fixes code highlight and smart annotations experiments bug
 2017-01-20 12:59:21 +01:00
mlorb 9a3c56de97 Merge pull request #421 from mlorb/ml_sci_540 
Protocol steps/results - adding titles for tables [SCI-540]
 2017-01-20 11:41:49 +01:00
zmagod 71453398b1 bugfix 2017-01-20 11:33:49 +01:00
zmagod 4f7d62e79d removes unneeded annotations [fixes SCI-915] 2017-01-20 11:33:10 +01:00
Matej Zrimšek 5d65627808 Fixed sample editing in samples table. [SCI-914] 2017-01-20 11:10:17 +01:00
Mojca Lorber 3789769af3 add dynamic length for sample type/group field when adding new sample 2017-01-20 09:53:44 +01:00
zmagod 9550c6dd35 fixes highlight.js 2017-01-19 17:09:25 +01:00
Mojca Lorber 6653f0d4c1 small fixes 2017-01-19 16:42:14 +01:00
Mojca Lorber 6de83ff53b fix hound 2017-01-19 15:58:40 +01:00
Mojca Lorber 4ea154410a add to fields with rich text formatting 2017-01-19 15:27:24 +01:00
Matej Zrimšek 54f8b01341 Removed smart annotation filter button disabling, when no results are found for that filter (so that 'no result found' displays instead). [SCI-894] 2017-01-19 15:26:28 +01:00
Mojca Lorber 44de927cf4 display smart annotations in reports - without rich text fields 2017-01-19 14:22:54 +01:00
Oleksii Kriuchykhin 890c5e3c3d Add “no results found” message in smart annotation [SCI-886] 2017-01-19 13:42:58 +01:00
Zmago Devetak 039a8d7da6 Merge pull request #426 from ZmagoD/zd_add_tinyMCE 
Add tiny mce
 2017-01-19 12:57:55 +01:00
zmagod 2cbb8ba41a removed unneeded comments 2017-01-19 12:54:48 +01:00
mz3944 da604d2619 Merge pull request #427 from mz3944/mz-sci-908 
Some smart annotations refactoring [SCI-908]
 2017-01-19 12:15:20 +01:00
zmagod f2d5066dc7 fix some bugs 2017-01-19 11:37:59 +01:00
Matej Zrimšek 5d86bbb812 Smart annotations improved documentation. [SCI-908] 2017-01-19 10:56:02 +01:00
Matej Zrimšek fec83e8c45 Smart annotations refactoring. [SCI-908] 2017-01-19 10:55:43 +01:00
zmagod 2ccafdd670 bug fix 2017-01-19 10:12:01 +01:00
zmagod 27d3868f37 fix bugs 2017-01-19 09:40:39 +01:00
zmagod 88d7cb200e removed quill 2017-01-18 23:06:14 +01:00
zmagod 65fa631b1c adding tinyMce first run 2017-01-18 22:40:08 +01:00
okriuchykhin 18d329fb42 Merge pull request #423 from okriuchykhin/ok_SCI_896 
Make search work for full names in smart annotations [SCI-896]
 2017-01-18 17:58:52 +01:00
Oleksii Kriuchykhin 6555fd02b6 Make search work for full names in smart annotations [SCI-896] 2017-01-18 16:57:51 +01:00
okriuchykhin 7f6ceef9e9 Merge pull request #422 from okriuchykhin/ok_SCI_897 
Remove sample type and group from smart annotation [SCI-897]
 2017-01-18 16:26:25 +01:00
mz3944 b5e38afb64 Merge pull request #416 from mz3944/mz-sci-884 
Smart annotation bug fixes [SCI-884, SCI-889] [WIP]
 2017-01-18 16:13:19 +01:00
Matej Zrimšek dbbb709bf2 Smart annotations minor refactoring. [SCI-884, SCI-889] 2017-01-18 16:04:39 +01:00
Matej Zrimšek 24458fe590 Smart annotations filter switching fixed/hacked. [SCI-884, SCI-889] 2017-01-18 15:29:48 +01:00
Oleksii Kriuchykhin e45749d3b2 Remove sample type and group from smart annotation [SCI-897] 2017-01-18 14:46:53 +01:00
Mojca Lorber f656a1093d fix hound 2017-01-18 14:40:24 +01:00
Mojca Lorber 6155a458e7 update search 2017-01-18 14:22:19 +01:00
Mojca Lorber dde9854bf1 update protocol import/export and clone 2017-01-18 14:22:19 +01:00
Mojca Lorber 3b92ab9f36 add names to tables from protocol steps in reports 2017-01-18 14:22:19 +01:00
Mojca Lorber b3c423c582 add table name in protocol step 2017-01-18 14:22:18 +01:00
okriuchykhin 8a220c2351 Merge pull request #414 from okriuchykhin/ok_SCI_887 
Do not show archived projects, experiments and tasks in smart annotations [SCI-887]
 2017-01-18 13:50:22 +01:00
Oleksii Kriuchykhin 55d0e82fcd Change If statement to ternary operator [SCI-887] 2017-01-18 13:43:21 +01:00
Oleksii Kriuchykhin a490a12fb1 Add truncation of image description in the preview [SCI-873] 2017-01-18 13:28:56 +01:00
Luka Murn cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
okriuchykhin 9dfa30fbb4 Merge pull request #418 from okriuchykhin/ok_SCI_855_v2 
Remove previous fix for popups [SCI-855]
 2017-01-18 11:00:54 +01:00
Oleksii Kriuchykhin 12eb1df69f Remove previous fix for popups [SCI-855] 2017-01-18 10:59:00 +01:00
Zmago Devetak 1b9f7db385 Merge pull request #405 from ZmagoD/zd_SCI_832 
Visualization of User smart annotation after saving the field
 2017-01-18 09:36:42 +01:00
okriuchykhin 781a68e0d5 Merge pull request #415 from okriuchykhin/ok_SCI_888 
Add missed space in the string [SCI-888]
 2017-01-18 09:34:51 +01:00
zmagod cb0483a6e6 refactor 2017-01-18 08:34:29 +01:00
Oleksii Kriuchykhin ea8f6a8c6b Fix issue in report editor [SCI-102] 2017-01-17 14:21:59 +01:00
Matej Zrimšek 3085452ec9 Fixed some hound alerts. [SCI-884] 2017-01-17 11:04:16 +01:00
Matej Zrimšek d3c33c9dca Refactored smart annotation JS. [SCI-884] 2017-01-17 10:05:41 +01:00
Luka Murn ffc2b56dff Fix String quotes 2017-01-17 08:28:41 +01:00
Luka Murn 2f48409fdd Merge pull request #409 from Ducz0r/lm-sci-813-fix-v2 
Fix filter not working correctly with hidden custom columns [SCI-813]
 2017-01-17 08:17:52 +01:00
Oleksii Kriuchykhin 0ce71884a5 Add missed space in the string [SCI-888] 2017-01-16 17:09:41 +01:00
Oleksii Kriuchykhin 50edaef4ff Do not show archived projects, experiments and tasks in smart annotations [SCI-887] 2017-01-16 16:55:10 +01:00
Luka Murn 16955dcee6 Fix Hound errors. 2017-01-16 15:58:37 +01:00
Luka Murn a2935c6620 Add sample info modal popup to sample smart annotations 
This MR also loads datatables.js globally (as it's required by
the modal), so I removed it everywhere in code, and it shouldn't
be used anymore (e.g. '//= require datatables').

Closes SCI-892.
 2017-01-16 15:52:02 +01:00
Matej Zrimšek 2877126dc6 Fixed selected search filter button style. [SCI-884] 2017-01-16 12:52:03 +01:00
okriuchykhin 02bfd19d1c Merge pull request #385 from okriuchykhin/ok_SCI_102 
Fix XSS on activites and throghout the rest of app [SCI-102]
 2017-01-16 11:41:38 +01:00
mlorb 88cc87d168 Merge pull request #408 from mlorb/ml-sci-847-v2 
Adjust columns width in samples table header after selecting sample group [SCI-847]
 2017-01-16 10:52:00 +01:00
Luka Murn a0e9e5afa8 Merge pull request #402 from mz3944/mz-sci-848-v2 
Unable to delete samples [SCI-848]
 2017-01-16 10:47:13 +01:00
Luka Murn 0fd9660eb7 Merge pull request #403 from Ducz0r/lm-sci-876-fix 
Year difference problems with notifications [SCI-876]
 2017-01-14 10:01:38 +01:00
Luka Murn 1acf258c70 Fix minor Zmagohound comment 2017-01-14 10:00:52 +01:00
Mojca Lorber 9f1a49847e fix table header again 2017-01-13 18:54:43 +01:00
Matej Zrimšek 15d7944302 Preventing splitting of the words in the lookup query for # smart annotations. Query on the # is now performed on every character input, before it sometimes just filtered out the old (results count limited) query. Some refactoring of samrt annotations JS. [SCI-884, SCI-889] 2017-01-13 18:51:05 +01:00
Luka Murn ba567284ed Fix filter not working correctly with hidden custom columns 
Closes SCI-813.
 2017-01-13 17:03:19 +01:00
Mojca Lorber 5f7e0b2227 adjust columns width in samples table header after selecting sample group 2017-01-13 15:59:47 +01:00
okriuchykhin 1ae5e6f8a7 Merge pull request #406 from okriuchykhin/ok_SCI_855 
Fix compatibility of fixed samples table header and modal-tooltip [SCI-855]
 2017-01-13 15:56:37 +01:00
Oleksii Kriuchykhin a190ef36ff Extend comment to make more clear [SCI-855] 2017-01-13 12:43:43 +01:00
zmagod 1b2fa78e42 adds user preview to user smart annotation [fixes SCI-832] 2017-01-13 11:34:10 +01:00
Oleksii Kriuchykhin 097209bd9d Fix compatibility of fixed samples table header and modal-tooltip [SCI-855] 2017-01-13 11:34:05 +01:00
Mojca Lorber bc6fbc5f91 fix hound 2017-01-13 11:18:44 +01:00
Mojca Lorber 4250088447 fix broken scrolling functionality in samples table 2017-01-13 11:07:33 +01:00
Oleksii Kriuchykhin f567d0307e Fix includes [SCI-102] 2017-01-12 17:02:01 +01:00
Oleksii Kriuchykhin 75031e17b9 Remove double sanitization from views [SCI-102] 2017-01-12 16:54:15 +01:00
Oleksii Kriuchykhin 69b65c27f8 Remove input sanitization in the models [SCI-102] 2017-01-12 16:20:37 +01:00
Luka Murn bc03a26d4b Also fix this new year issue on comments display 2017-01-12 15:06:12 +01:00
Luka Murn 8b01f912a0 Fix new year problems with activities 
Closes SCI-876.
 2017-01-12 14:47:15 +01:00
Matej Zrimšek 93a8e0bdae Fixes sample deletion when coming from experiment page and having modules attached. [SCI-848] 2017-01-12 14:08:29 +01:00
Oleksii Kriuchykhin 0350f2f792 Add html escaping to name filelds in the views [SCI-102] 2017-01-12 11:03:14 +01:00
zmagod 1840fdb7e5 cleanup js 2017-01-12 09:52:29 +01:00
Oleksii Kriuchykhin d05c16b0ba Added auto_link wrapper with custom sanitization [SCI-102] 2017-01-11 17:02:17 +01:00
mz3944 aba12b9b2c Merge pull request #401 from mz3944/mz-sci-878 
Protocol repository - user cannot download files
 2017-01-11 16:25:45 +01:00
Oleksii Kriuchykhin 0546716a0b Improve user input sanitization, fix bugs [SCI-102] 2017-01-11 15:50:11 +01:00
okriuchykhin 404952336d Merge pull request #400 from okriuchykhin/ok_SCI_846 
Fixes sorting of custom columns in samples datatable [SCI-846]
 2017-01-11 15:34:02 +01:00
mlorb fe1ef97523 Merge pull request #398 from mlorb/ml_sci_843 
Adjust samples tables height when in edit mode selecting sample type/group [SCI-843]
 2017-01-11 15:33:52 +01:00
Mojca Lorber 3a3f20a215 fix bug with different approach 2017-01-11 15:25:10 +01:00
zmagod 065e1a7120 fix hound 2017-01-11 15:06:00 +01:00
zmagod 3a1ec0eb5e refactor [fixes SCI-834] [fixes SCI-837] [fixes SCI-823] [fixes SCI-835] [fixes SCI-836] [fixes SCI-824] 2017-01-11 14:56:47 +01:00
Matej Zrimšek 30a9c283fb Added back bullets to images in protocol preview in protocol repository. 2017-01-11 14:15:07 +01:00
Matej Zrimšek 852dc2eb7e Added file downloading to protocol preview in protocol repository. [SCI-878] 2017-01-11 14:14:12 +01:00
Oleksii Kriuchykhin 094d0f0f71 Fixes sorting of custom columns in samples datatable [SCI-846] 2017-01-11 13:21:38 +01:00
okriuchykhin 8d4b2d7373 Merge pull request #399 from okriuchykhin/ok_SCI_811_v2 
Fix changed sample type and sample group in sample edit [SCI-811]
 2017-01-11 11:37:38 +01:00
mlorb 90e644ddd9 Merge branch 'master' into ml_sci_843 2017-01-11 11:35:41 +01:00
mlorb f0842389b2 Merge pull request #396 from mlorb/ml_sci_851 
Change color of clickable names when row is selected in datatables [SCI-851]
 2017-01-11 11:21:31 +01:00
mlorb b898c792c4 Merge pull request #395 from mlorb/ml_sci_847 
Adjust columns width in table header after selecting sample type/group [SCI-847]
 2017-01-11 10:43:12 +01:00
zmagod a4aa933151 refactor smart annotation parser helper 2017-01-11 10:34:14 +01:00
zmagod a903772de8 style dropdown 2017-01-10 17:05:32 +01:00
Oleksii Kriuchykhin a3d9e25feb Fix changed sample type and sample group in sample edit [SCI-811] 2017-01-10 16:51:51 +01:00
Mojca Lorber 577e526fec adjust samples tables height when in edit mode selecting sample type or group 2017-01-10 16:31:20 +01:00
zmagod fc76a4ae6d Merge branch 'smart-annotations' of https://github.com/biosistemika/scinote-web into zd_SCI_834 2017-01-10 14:22:04 +01:00
zmagod 89e8946a47 expand smart annotation 2017-01-10 14:14:21 +01:00
zmagod e0e998a0d8 add smart annotation parser helper 2017-01-10 14:14:21 +01:00
zmagod 6efcf49927 working version of dropdown filter 2017-01-10 14:14:21 +01:00
zmagod 53d20df449 added xregexp 2017-01-10 14:14:21 +01:00
zmagod 94262b56ef prepare data for atwho 2017-01-10 14:14:21 +01:00
Luka Murn 0cf5afa499 Merge pull request #376 from Ducz0r/lm-sci-813-fix 
Fix search on hidden columns in samples table [SCI-813]
 2017-01-10 11:27:56 +01:00
Luka Murn 05be1e862f Update filter after toggling visibility (if neccesary) 2017-01-10 11:26:12 +01:00
okriuchykhin f8237e025a Merge pull request #394 from okriuchykhin/ok_SCI_853 
Fix non removable error messages in samples [SCI-853]
 2017-01-10 11:00:01 +01:00
Luka Murn 5873eea994 We serve to please the Hound 2017-01-10 10:42:52 +01:00
Oleksii Kriuchykhin 4c9c9037ed Enable image preview after editing protocol and disable preview modal animation [SCI-868] 2017-01-09 17:19:46 +01:00
Mojca Lorber 510731bd4e change color of clickable nameswhen row is selected in datatables 2017-01-09 15:51:21 +01:00
Mojca Lorber a0a7f35d44 adjust columns width in table header after selecting sample type/group 2017-01-09 15:00:07 +01:00
Oleksii Kriuchykhin 773b00933a Improve multiple messages handling in samples [SCI-853] 2017-01-09 13:55:50 +01:00
Oleksii Kriuchykhin 0fd7688427 Fix hiding of error messages in the samples datatable [SCI-853] 2017-01-09 13:34:23 +01:00
okriuchykhin 3f930ccfce Merge pull request #392 from okriuchykhin/ok_SCI_858 
Fixes wrong samples info modals being shown in samples datatable [SCI-858]
 2017-01-09 12:49:38 +01:00
mz3944 54ef2be94b Merge pull request #383 from mz3944/mz-sci-845 
Fixed samples table all rows un/checking. [SCI-845]
 2017-01-09 11:58:44 +01:00
mz3944 ef431da2db Merge pull request #389 from mz3944/mz-sci-848 
Unable to delete samples [SCI-848]
 2017-01-09 11:57:48 +01:00
okriuchykhin 3c47d17019 Merge pull request #386 from okriuchykhin/ok_SCI_815 
Improve error message when importing CSV files with incorrect character encoding [SCI-815]
 2017-01-09 11:54:28 +01:00
zmagod 226d5d8247 added blank string to wopi-lock header param 2017-01-09 11:51:18 +01:00
mlorb 006db01b11 Merge pull request #390 from mlorb/ml_sci_850 
Fix samples info popup error [SCI-850]
 2017-01-09 11:38:50 +01:00
mlorb f14ad0f762 Merge pull request #387 from mlorb/ml_sci_732 
Add protocol preview to search results [SCI-732]
 2017-01-09 11:28:04 +01:00
Oleksii Kriuchykhin bc8db28746 Fixes wrong samples info modals being shown in samples datatable [SCI-858] 2017-01-09 09:38:42 +01:00
Luka Murn 0ee5b98977 Refactor code a bit, add dismiss button to header 2017-01-07 09:59:52 +01:00
Matej Zrimšek 72df48500d Fixed samples table all rows un/checking. [SCI-845] 2017-01-06 18:19:20 +01:00
Mojca Lorber 6f7c08fa63 fix samples info popup error 2017-01-06 17:31:17 +01:00
Oleksii Kriuchykhin 89710d8782 Enable image preview for newly uploaded images [SCI-694] 2017-01-06 16:41:24 +01:00
Oleksii Kriuchykhin aa2b573278 Enable image preview while editing steps and code style improvements [SCI-694] 2017-01-06 15:58:23 +01:00
mz3944 1b56e9d07c Merge pull request #384 from mz3944/mz-sci-849 
Fixes experiment button not being clicable in project overview page. …
 2017-01-06 14:26:37 +01:00
Matej Zrimšek ec7a1cb4c0 Replaced remaining related hard-coded names with constants and generalized delete samples name fetching. Minor refactoring. [SCI-848] 2017-01-06 14:23:20 +01:00
Matej Zrimšek 5d104981fd Fixed sample deletion on experiments level. Minor refactoring. [SCI-848] 2017-01-06 14:23:20 +01:00
Luka Murn 7835753d3c Add atwho-users URL to <body> 2017-01-06 12:48:37 +01:00
Luka Murn 3cdd375a2d Merge pull request #388 from biosistemika/hotfix-1.6.1 
Hotfix 1.6.1
 2017-01-06 11:23:16 +01:00
Mojca Lorber aad2eadeae syntax fix 2017-01-06 10:46:36 +01:00
Mojca Lorber 4e7e261225 fix protocol preview 2017-01-06 10:10:33 +01:00
Mojca Lorber 356edba1b3 add protocol preview to search results 2017-01-05 18:08:59 +01:00
Oleksii Kriuchykhin cba064dfcc Improve error message whan importing CSV files with incorrect character encoding [SCI-815] 2017-01-05 17:00:21 +01:00
Luka Murn 488613afcc Add index to users' full name attribute 2017-01-05 16:26:49 +01:00
Oleksii Kriuchykhin 9987993ce0 Avoid sanitizing of data attributes [SCI-102] 2017-01-05 16:05:48 +01:00
Oleksii Kriuchykhin 1009347026 Add list of whitelisted attributes [SCI-102] 2017-01-05 15:33:41 +01:00
Luka Murn ef688feb4e Hotfix 1.6.1 
Set confirmed_at to created_at when using no
email confirmations and users sign up by themselves.
 2017-01-05 15:27:18 +01:00
Matej Zrimšek 4b0f47675a Fixes experiment button not being clicable in project overview page. [SCI-849] 2017-01-05 14:42:52 +01:00
Luka Murn b614ce714b Restyle atwho dropdown 2017-01-05 14:06:48 +01:00
Oleksii Kriuchykhin 0ecb6904d4 Add user input sanitizing in the models [SCI-102] 2017-01-05 13:31:35 +01:00
Oleksii Kriuchykhin 835e982292 SAnitize AJAX calls in controllers and datatables [SCI-102] 2017-01-05 13:12:22 +01:00
Oleksii Kriuchykhin cd3924afd3 Sanitize .html_safe marked strings which contain tags [SCI-102] 2017-01-05 13:04:19 +01:00
Oleksii Kriuchykhin 9c4191a1e0 Initial code commit [SCI-102] 2017-01-05 13:04:19 +01:00
Luka Murn a78bb79618 Temp commit 2017-01-05 12:07:17 +01:00
Luka Murn eb64162633 Remove Gem dependency, add atwho as regular vendor/js 2017-01-05 12:06:59 +01:00
Luka Murn e12907c9b9 Remove original atwho css, apply our own 2017-01-05 10:52:28 +01:00
Luka Murn 09ef3b3ad5 Merge pull request #378 from Ducz0r/lm-sci-802-fix 
Add tooltips to samples column dropdown [SCI-802]
 2017-01-04 11:30:04 +01:00
Luka Murn 2c5b27ce81 Change "Update" to "Save" 
Closes SCI-802.
 2017-01-04 11:29:34 +01:00
mlorb 59751ec41e Merge pull request #373 from mlorb/ml_sci_709 
Add Protocol Preview to Protocol repository [SCI-709]
 2017-01-04 11:28:55 +01:00
Luka Murn 3bee9d2e12 Save an (yet unworking) version of user smart annotations 
Used so other devs can start working on smart annotations.
 2017-01-04 10:54:02 +01:00
Luka Murn 23e60e0d01 Add Gems for smart annotations (atwho) 2017-01-04 10:51:55 +01:00
Luka Murn cedc6c5074 Merge pull request #382 from Ducz0r/lm-sci-166-fix 
Re-add tags index controller action to render tags [SCI-166]
 2017-01-04 10:48:09 +01:00
Luka Murn 6402acc102 Merge pull request #377 from Ducz0r/lm-sci-820-fix 
Fix 2 bugs with comments editing [SCI-820]
 2017-01-04 10:47:29 +01:00
zmagod 87ffa7f03b fixes X-WOPI-ServerVersion bug 2017-01-04 10:02:08 +01:00
Luka Murn 37cd6417c8 Merge pull request #374 from Ducz0r/lm-sci-808-814-fix 
Fix some bugs on sample groups & types page [SCI-808, SCI-814]
 2017-01-04 09:50:26 +01:00