Commit graph

1454 commits

Author SHA1 Message Date
Oleksii Kriuchykhin
2aba0f46a6 Add global settings base class [SCI-1004] 2017-02-20 15:11:57 +01:00
Luka Murn
573f3c8d42 Merge pull request #483 from Ducz0r/lm-sci-1026-fix
Fix manage project users modal bug [SCI-1026]
2017-02-20 08:22:03 +01:00
Luka Murn
ce617894c5 Fix manage project users modal bug
Closes SCI-1026.
2017-02-16 15:29:58 +01:00
Oleksii Kriuchykhin
4fb5fa79af Move task completion activity and notification creation to separate methods [SCI-999] 2017-02-16 13:36:05 +01:00
Oleksii Kriuchykhin
218e96b1f0 Code style fixes [SCI-999] 2017-02-16 11:45:07 +01:00
Zmago Devetak
c963674e49 Merge pull request #482 from ZmagoD/zd_SCI_987_vol2
fixes bug with user teams table [fixes SCI-987]
2017-02-15 13:30:25 +01:00
Luka Murn
164bd787e9 Merge pull request #481 from Ducz0r/lm-sci-958-fix
Team administrators are Viewers of all Projects in Team [SCI-958]
2017-02-15 10:40:52 +01:00
zmagod
836baa7412 fixes bug with user teams table [fixes SCI-987] 2017-02-15 10:06:21 +01:00
Nbernot
97584aabb3 Updated the lists of office online file extensions
Extended the list of file extensions that receive office online icons and 'open in' text.
2017-02-14 16:44:03 +01:00
Luka Murn
d097f0dd15 Merge pull request #477 from Ducz0r/lm-sci-928
Refactor, merge, unify, improve, update, beautify settings page [SCI-928]
2017-02-13 16:42:57 +01:00
Luka Murn
1b6f50647c Please Hound 2017-02-13 16:40:27 +01:00
Luka Murn
b369177d1f Merge pull request #480 from Ducz0r/lm-sci-964-fix
Fix system notification email links not working bug [SCI-964]
2017-02-13 16:31:04 +01:00
Oleksii Kriuchykhin
f97c20e9b5 Fix hound warnings [SCI-999] 2017-02-13 15:42:28 +01:00
Oleksii Kriuchykhin
78d5cbb223 Add links to task completion notification [SCI-999] 2017-02-13 14:51:21 +01:00
Luka Murn
86be639a7c Please the Hound 2017-02-13 14:20:44 +01:00
Luka Murn
3313d14316 Fix search for administrators and projects
Closes SCI-958.
2017-02-13 14:15:53 +01:00
Luka Murn
c6ed73bc82 Allow team admins to see all projects, even hidden ones 2017-02-13 13:42:53 +01:00
Luka Murn
f93cc89624 Fix system notification email links not working bug
Closes SCI-964.
2017-02-10 15:13:33 +01:00
Oleksii Kriuchykhin
cf8566df33 Add task complete/uncomplete functionality [SCI-999] 2017-02-10 14:27:20 +01:00
Luka Murn
3eb4faa44b Fix task restore action
Closes SCI-991.
2017-02-10 14:08:56 +01:00
Luka Murn
280b7a0e75 Minor fix 2017-02-09 15:10:45 +01:00
Luka Murn
2a9f975c13 Some minor fixes 2017-02-09 14:58:11 +01:00
Luka Murn
f7bd62547e Refactor teams settings into its own controllers 2017-02-09 14:37:59 +01:00
Luka Murn
7bee3a4ea0 Move user profile to settings 2017-02-09 11:34:52 +01:00
Luka Murn
5cb3eb5e09 Refactor preferences -> move them to subcontroller, subroute 2017-02-09 11:07:16 +01:00
okriuchykhin
c2a69982aa Merge pull request #471 from okriuchykhin/ok_SCI_936
Adds datatable to all teams page [SCI-936]
2017-02-07 10:33:33 +01:00
okriuchykhin
e2de3c92e7 Merge pull request #472 from okriuchykhin/ok_SCI_984
Check that user is a member of a team when switching to it [SCI-984]
2017-02-07 09:36:46 +01:00
okriuchykhin
53ff6a2893 Merge pull request #473 from okriuchykhin/ok_SCI_997
Fix smart annotation is missing at editing column with smart annotation [SCI-997]
2017-02-07 09:33:40 +01:00
Oleksii Kriuchykhin
80dbc669d0 Simplify all teams dt definition [SCI-936] 2017-02-06 17:17:48 +01:00
Oleksii Kriuchykhin
449f4479e9 Fix code style issues [SCI-936] 2017-02-06 17:08:20 +01:00
zmagod
c99a540eb3 adds hook to team name in the invitation template [fixes SCI-930] 2017-02-03 16:53:42 +01:00
Oleksii Kriuchykhin
916ed2572a Fix smart annotation is missing at editing column with smart annotation [SCI-997] 2017-02-03 16:42:38 +01:00
Oleksii Kriuchykhin
cc6b518c7f Check that user is a member of a team when switching to it [SCI-984] 2017-02-03 16:10:37 +01:00
Oleksii Kriuchykhin
62535a01bd Move teams datatable js code into separate file [SCI-936] 2017-02-03 10:44:42 +01:00
Oleksii Kriuchykhin
8b105aa030 Add override hooks [SCI-936] 2017-02-02 23:35:47 +01:00
Zmago Devetak
65bbd81497 Merge pull request #469 from ZmagoD/zd_SCI_929
Adds hook in user settings navigation
2017-02-02 15:01:37 +01:00
mlorb
970d99e6e3 Merge pull request #465 from mlorb/ml_sci_937
Redesign of individual team page [SCI-937]
2017-02-02 11:15:55 +01:00
mlorb
5510fa7751 rename data-hooks in team view 2017-02-02 10:36:23 +01:00
Oleksii Kriuchykhin
db90c5d63b Add datatable to all teams page [SCI-936] 2017-02-02 09:53:59 +01:00
zmagod
bb42bd04a5 adds hook in user settings navigation 2017-02-01 17:10:22 +01:00
Mojca Lorber
86351ce17d add data-hooks for billing 2017-02-01 15:01:54 +01:00
Mojca Lorber
d3e0eca44e redesign individual team page 2017-02-01 14:44:47 +01:00
Oleksii Kriuchykhin
031741d122 Disable protocols link if user has no teams [SCI-934] 2017-02-01 14:26:51 +01:00
Oleksii Kriuchykhin
c119b7c014 Make sciNote work for users without any teams [SCI_934] 2017-02-01 14:16:26 +01:00
Zmago Devetak
5c9954bb89 Merge pull request #450 from ZmagoD/zd_SCI_939
Refactor "organizations" to "teams"
2017-02-01 13:12:02 +01:00
okriuchykhin
067b9452a4 Merge pull request #464 from okriuchykhin/ok_SCI_935
Add config option to enable/disable users registration [SCI-935]
2017-02-01 09:36:36 +01:00
Luka Murn
059f9cfb25 Merge pull request #468 from biosistemika/hotfix-1.7.2
Change URLs to sciNote help pages [SCI-978]
2017-01-31 16:15:39 +01:00
Luka Murn
db75231617 Update URLs to sciNote support pages
Closes SCI-978.
2017-01-31 15:48:56 +01:00
zmagod
be5faad97c fixes hound 2017-01-31 13:33:55 +01:00
Oleksii Kriuchykhin
d1e69438de Add config option to enable/disable users registration [SCI-935] 2017-01-30 15:04:02 +01:00
mlorb
bc8c4c3c6c Merge pull request #463 from mlorb/ml_sci_965
Fix step does not save if table is without content [SCI-965]
2017-01-30 11:08:21 +01:00
Mojca Lorber
b291553d01 fix hound 2017-01-27 16:36:03 +01:00
Mojca Lorber
d5021fad2c fix step does not save if table is without content 2017-01-27 16:25:11 +01:00
okriuchykhin
9909f9dcff Merge pull request #456 from okriuchykhin/ok_SCI_951
Fix missing preview images in task and protocol management [SCI-951]
2017-01-27 14:42:41 +01:00
okriuchykhin
c6fe0003f4 Merge pull request #458 from okriuchykhin/ok_SCI_957
Fix protocol table filtering by keywords [SCI-957]
2017-01-27 14:19:53 +01:00
okriuchykhin
53e09bd50a Merge pull request #457 from okriuchykhin/ok_SCI_955
Fix comments re-initialization after edit of the results [SCI-955]
2017-01-27 11:50:52 +01:00
zmagod
e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
zmagod
61b260fb8a fixes bug in protocol management 2017-01-27 11:01:44 +01:00
mlorb
77236f161b Merge pull request #461 from mlorb/ml_sci_952
Fix bug with avatar in smart annotations [SCI-952]
2017-01-27 10:08:53 +01:00
Luka Murn
2c3be391a8 Merge pull request #462 from ZmagoD/zd_SCI_962_vol2
fix edit action
2017-01-26 17:25:57 +01:00
Luka Murn
36f25e98f1 Merge pull request #459 from okriuchykhin/ok_SCI_943
Fix RTF toolbar init after eding new step [SCI-943]
2017-01-26 17:25:41 +01:00
zmagod
30912c514e fix edit action 2017-01-26 17:24:24 +01:00
Mojca Lorber
5bed5f0f4a fix bug with avatar in smart annotations 2017-01-26 17:15:00 +01:00
zmagod
cec5f1333d fixes RTE bug for new text results [fixes SCI-962] 2017-01-26 16:54:43 +01:00
Oleksii Kriuchykhin
100cc700c6 Fix RTF toolbar init after eding new step [SCI-943] 2017-01-26 16:37:44 +01:00
Luka Murn
3bf447b0f4 Fix bug where reCaptcha form wasn't working 2017-01-26 16:06:29 +01:00
Oleksii Kriuchykhin
17a53cbd7f Fix protocol table filtering by keywords [SCI-957] 2017-01-26 15:52:46 +01:00
Oleksii Kriuchykhin
ff86184b24 Fix comments re-initialization after edit of the results [SCI-955] 2017-01-26 15:24:37 +01:00
Oleksii Kriuchykhin
0f860496a7 Fix image preview after saving of report [SCI-951] 2017-01-26 14:42:14 +01:00
Luka Murn
3e6d11a087 Merge pull request #455 from mlorb/ml_sci_944
Fix entering new smart anotations [SCI-944]
2017-01-26 14:06:35 +01:00
Mojca Lorber
13d1cc5171 fix entering new smart anotations 2017-01-26 13:50:32 +01:00
Oleksii Kriuchykhin
08aa882155 Fix generation of image previews after protocol loading from repo [SCI-951] 2017-01-26 13:19:59 +01:00
Luka Murn
0baaf12de3 Re-display images & checkboxes in PDF reports
Closes SCI-953.
2017-01-26 10:46:58 +01:00
Luka Murn
8c5a52417c Merge pull request #445 from okriuchykhin/ok_SCI_940
Refactor smart annotation/auto_link/simple_format rendering [SCI-940]
2017-01-25 17:49:38 +01:00
okriuchykhin
648d256dff Merge pull request #448 from okriuchykhin/ok_SCI_945
Fix openning of protocol preview with images [SCI-945]
2017-01-25 17:27:01 +01:00
okriuchykhin
6610c75bfc Merge pull request #452 from okriuchykhin/ok_SCI_949
Fix error when referencing deleted sample in SA [SCI-949]
2017-01-25 17:26:48 +01:00
Oleksii Kriuchykhin
c55f3cb99c Add flag to disable simple_format in custom_auto_link [SCI-940] 2017-01-25 17:18:19 +01:00
Oleksii Kriuchykhin
310d8c1920 Refactor smart annotation/auto_link/simple_format rendering [SCI-940] 2017-01-25 17:18:19 +01:00
mlorb
bedef297c4 Merge pull request #453 from mlorb/ml_sci_950
Fix problem with protocol export [SCI-950]
2017-01-25 17:15:21 +01:00
okriuchykhin
4c0f68ffbd Merge pull request #410 from okriuchykhin/ok_SCI_855
Improved tooltip handling in samples datatable V2 [SCI-855]
2017-01-25 16:19:52 +01:00
Mojca Lorber
99a40961fa fix problem with protocol export 2017-01-25 16:12:48 +01:00
Oleksii Kriuchykhin
5fe9261595 Fix error when referencing deleted sample in SA [SCI-949] 2017-01-25 15:54:12 +01:00
zmagod
a507bb4d1f hound 2017-01-25 15:40:35 +01:00
zmagod
1220466035 fixing hound 2017-01-25 15:00:14 +01:00
zmagod
afd8328e9c rename ortanizations -> teams 2017-01-25 14:22:06 +01:00
Oleksii Kriuchykhin
ddd8bcf7b0 Prevent double initialization of popup [SCI-855] 2017-01-25 13:47:01 +01:00
Oleksii Kriuchykhin
96a9857dec Add handling of popups in the end of the table [SCI-855] 2017-01-25 13:47:01 +01:00
Oleksii Kriuchykhin
fb49ce8be2 Improved tooltip handling in samples datatable [SCI-855] 2017-01-25 13:47:01 +01:00
Mojca Lorber
6905fc8c08 remove letter f 2017-01-25 13:20:11 +01:00
Oleksii Kriuchykhin
90e4b26c69 Fix openning of protocol preview with images [SCI-945] 2017-01-25 13:06:12 +01:00
zmagod
f04a2f663a renamed organizations in config/ 2017-01-25 12:30:11 +01:00
zmagod
8c035a1981 renames organization in assets 2017-01-25 12:12:27 +01:00
okriuchykhin
35b8638598 Merge pull request #446 from okriuchykhin/ok_SCI_902_v2
Add sanitization of group/type to sample edit [SCI-902]
2017-01-25 12:05:30 +01:00
zmagod
72e13beee3 renamed organizations in views 2017-01-25 12:01:23 +01:00
Mojca Lorber
2277af534c fix table titles 2017-01-25 11:01:35 +01:00
zmagod
a6285f0431 renamed utilities 2017-01-25 10:24:50 +01:00
zmagod
9ae799d52c rename organization/org/Organization to Team in datatables 2017-01-25 09:48:49 +01:00
zmagod
9d90b9b42a rename Organization to Team in models 2017-01-24 17:08:48 +01:00
zmagod
c2c5616078 rename Organization to Team in controllers 2017-01-24 17:06:51 +01:00
Oleksii Kriuchykhin
fe6d6842c2 Add sanitization of group/type to sample edit [SCI-902] 2017-01-24 16:58:03 +01:00
zmagod
21c2f82582 rename controllers where org/organization 2017-01-24 16:57:14 +01:00
zmagod
a193850ae6 rename models where org/organization 2017-01-24 16:34:21 +01:00
Oleksii Kriuchykhin
365eef506c Fixes merge conflicts with smart-annotations branch 2017-01-24 15:20:50 +01:00
okriuchykhin
f1483e4cad Merge pull request #444 from okriuchykhin/ok_SCI_902_v2
Add sanitization to sample groups/types [SCI-902]
2017-01-24 14:44:55 +01:00
Oleksii Kriuchykhin
a04f05eeb3 Add sanitization to sample groups/types [SCI-902] 2017-01-24 14:39:54 +01:00
mlorb
02f314ce60 Merge pull request #443 from mlorb/ml_sci_919_v2
Remove table of content and customize link target [SCI-919]
2017-01-24 14:39:47 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations'
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
2017-01-24 14:33:23 +01:00
Mojca Lorber
4dc7998fdd Remove table of content and customize link target 2017-01-24 13:10:01 +01:00
Zmago Devetak
40bf293ec7 Merge pull request #441 from ZmagoD/zd_SCI_924
adds smart annotation in task comments, refactor smart_annotation_par…
2017-01-24 11:18:41 +01:00
mlorb
4253e3de2b Merge pull request #439 from mlorb/ml_sci_919
Remove functionalities from rich text formatting [SCI-919]
2017-01-24 11:03:34 +01:00
mz3944
34f832d123 Merge pull request #437 from mz3944/mz-sci-913
Added smart annotations when adding new sample in samples table [SCI-913]
2017-01-24 11:03:00 +01:00
okriuchykhin
7fa1f3d966 Merge pull request #438 from okriuchykhin/ok_SCI_921
Remove unneeded HTML scrubber in protocol importer [SCI-921]
2017-01-24 11:02:43 +01:00
Matej Zrimšek
b48e48e100 Prevent sample row in samples datatable from toggling when clicking on smart annotation link. [SCI-913] 2017-01-24 10:56:10 +01:00
zmagod
6e7fa21dd3 adds smart annotation in task comments, refactor smart_annotation_parser method, fix the user popover description [fixes SCI-924] 2017-01-24 10:51:12 +01:00
Matej Zrimšek
2e041d9e81 Added smart annotations when adding new sample in samples table. [SCI-913] 2017-01-24 10:23:26 +01:00
Oleksii Kriuchykhin
2434c73a0c Remove unneeded HTML scrabber in protocol importer [SCI-921] 2017-01-24 09:52:38 +01:00
Mojca Lorber
eb40513ada remove functionalities from rich text formatting 2017-01-24 09:44:37 +01:00
Oleksii Kriuchykhin
401b37956b Simplify protocol export start [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin
d555ba7905 Add export to protocol management page and code style improvements [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin
14a6705b55 Implemented protocol export through Zip::OutputStream [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin
1abd7fc574 Added xml schemas and zip gem [SCI-742] 2017-01-23 17:34:02 +01:00
Oleksii Kriuchykhin
69f31a62e7 Initial code commit [SCI-742] 2017-01-23 17:33:10 +01:00
Zmago Devetak
674999f987 Merge pull request #436 from ZmagoD/zd_SCI_922
fixed user without permissions bug [fixes SCI-922]
2017-01-23 17:25:07 +01:00
zmagod
20cde2654b fixed user without permissions bug [fixes SCI-922] 2017-01-23 10:53:42 +01:00
zmagod
9c3bc8dac7 fixes checklist item user popover bug [fixes SCI-907] 2017-01-23 09:47:04 +01:00
mz3944
fd63a1de12 Merge pull request #432 from mlorb/ml-sci-fix-847
Add dynamic length for sample type/group field when adding new sample [SCI-847]
2017-01-20 15:46:34 +01:00
mlorb
2d073c8c04 Merge pull request #430 from mlorb/ml_sci_826
Display smart annotations in reports [SCi-826]
2017-01-20 13:49:40 +01:00
Mojca Lorber
8e02c2e025 add locale - fix 2017-01-20 13:37:07 +01:00
mz3944
18a2e4c423 Merge pull request #433 from mz3944/mz-sci-914
Edit of a sample in sample table does not work
2017-01-20 13:02:05 +01:00
Zmago Devetak
c1e7cc83a7 Merge pull request #434 from ZmagoD/zd_SCI_915
Text is deleted when entering smart annotation in rich text editor
2017-01-20 13:01:29 +01:00
Zmago Devetak
7bd368e002 Merge pull request #431 from ZmagoD/zd_add_code_highlight
Fixes code highlight and smart annotations experiments bug
2017-01-20 12:59:21 +01:00
mlorb
9a3c56de97 Merge pull request #421 from mlorb/ml_sci_540
Protocol steps/results - adding titles for tables [SCI-540]
2017-01-20 11:41:49 +01:00
zmagod
71453398b1 bugfix 2017-01-20 11:33:49 +01:00
zmagod
4f7d62e79d removes unneeded annotations [fixes SCI-915] 2017-01-20 11:33:10 +01:00
Matej Zrimšek
5d65627808 Fixed sample editing in samples table. [SCI-914] 2017-01-20 11:10:17 +01:00
Mojca Lorber
3789769af3 add dynamic length for sample type/group field when adding new sample 2017-01-20 09:53:44 +01:00
zmagod
9550c6dd35 fixes highlight.js 2017-01-19 17:09:25 +01:00
Mojca Lorber
6653f0d4c1 small fixes 2017-01-19 16:42:14 +01:00
Mojca Lorber
6de83ff53b fix hound 2017-01-19 15:58:40 +01:00
Mojca Lorber
4ea154410a add to fields with rich text formatting 2017-01-19 15:27:24 +01:00
Matej Zrimšek
54f8b01341 Removed smart annotation filter button disabling, when no results are found for that filter (so that 'no result found' displays instead). [SCI-894] 2017-01-19 15:26:28 +01:00
Mojca Lorber
44de927cf4 display smart annotations in reports - without rich text fields 2017-01-19 14:22:54 +01:00
Oleksii Kriuchykhin
890c5e3c3d Add “no results found” message in smart annotation [SCI-886] 2017-01-19 13:42:58 +01:00
Zmago Devetak
039a8d7da6 Merge pull request #426 from ZmagoD/zd_add_tinyMCE
Add tiny mce
2017-01-19 12:57:55 +01:00
zmagod
2cbb8ba41a removed unneeded comments 2017-01-19 12:54:48 +01:00
mz3944
da604d2619 Merge pull request #427 from mz3944/mz-sci-908
Some smart annotations refactoring [SCI-908]
2017-01-19 12:15:20 +01:00
zmagod
f2d5066dc7 fix some bugs 2017-01-19 11:37:59 +01:00
Matej Zrimšek
5d86bbb812 Smart annotations improved documentation. [SCI-908] 2017-01-19 10:56:02 +01:00
Matej Zrimšek
fec83e8c45 Smart annotations refactoring. [SCI-908] 2017-01-19 10:55:43 +01:00
zmagod
2ccafdd670 bug fix 2017-01-19 10:12:01 +01:00