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5881 commits 43 branches 185 tags 169 MiB
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184 commits

Author SHA1 Message Date
Jure Grabnar
721bb9ab77
SCI-3649 All reagent data from step are not imported (#1881) 
SCI-3649 All reagent data from step are not imported
 2019-07-03 16:54:25 +02:00
Jure Grabnar
4715e8ec4b Fix building of zero steps protocls 
Close SCI-3648
 2019-07-03 09:34:15 +02:00
Miha Mencin
611c417b43 code review changes 2019-07-03 09:21:41 +02:00
Miha Mencin
ab038ffdf7 SCI-3649 adding catalog number, fixing up the design a bit 2019-07-02 19:47:05 +02:00
Jure Grabnar
ebbb36cc6d Remove border from the import button 2019-06-28 11:32:47 +02:00
Jure Grabnar
8146a6a42c Assign name = position if protocolsIO step has no name 2019-06-28 11:29:03 +02:00
Jure Grabnar
c10428cd2a Fix sorting buttons not applying params 2019-06-28 08:55:27 +02:00
Jure Grabnar
9be4fc2470 Fix tests 2019-06-28 02:19:06 +02:00
Jure Grabnar
0a77cedaf8 Fix sorting of external protocols and start showing results 2019-06-27 22:48:56 +02:00
Urban Rotnik
9cb4454537 New implementation for attachments creation 2019-06-27 17:02:06 +02:00
Jure Grabnar
82fb8ebd2e
Implement protocols.io error handling (#1869) 
Implement protocols.io error handling
 2019-06-27 16:35:55 +02:00
Jure Grabnar
06b8d1fda7 Update ApiClient tests 
Closes SCI-3434
 2019-06-27 14:54:19 +02:00
Jure Grabnar
8a7a2eb097 Add StandardError checking for ProtocolNormalizer 2019-06-27 10:12:00 +02:00
Jure Grabnar
86bc69e510 Simplify V3 errors structure 2019-06-27 09:42:21 +02:00
Mojca Lorber
9fd83d54a0 Put network error handeling into api and refactor errors 2019-06-26 14:04:03 +02:00
Urban Rotnik
bf6041e13d Update sanitization of html descriptions 2019-06-19 11:05:22 +02:00
Urban Rotnik
7e69375016 Drop header column and row when extract tables 2019-06-19 10:47:38 +02:00
Urban Rotnik
2a579f2240 Add Warnings, Before start and Guidelinese to protocol description 2019-06-19 09:02:42 +02:00
Mojca Lorber
ebcaa4b014 Implement protocols.io error handling for api client and normalizer 2019-06-18 14:01:57 +02:00
Urban Rotnik
7fad5fc594 Add search service and normalizer for list 2019-06-17 12:24:15 +02:00
Jure Grabnar
362b0cd45d Hound fixes 2019-06-17 12:24:11 +02:00
Jure Grabnar
640f6c1211 Fix tests after BuildProtocolFromClientService refactor 
Closes SCI-3544
 2019-06-17 12:24:11 +02:00
Jure Grabnar
1e8627c450 Refactor ImportProtocol service to BuildProtocolService 
Closes SCI-3544
 2019-06-17 12:24:10 +02:00
Urban Rotnik
2bb4f558b7 View rendering simplified, small improvements 2019-06-17 12:24:09 +02:00
Urban Rotnik
807104035c Add StepBuilder, TableBuilder, AssetBuilder for PIO, normalized updated 2019-06-17 12:24:09 +02:00
Urban Rotnik
6a4deb0201 Add ProtocolIntermediateObject 2019-06-17 12:24:09 +02:00
Urban Rotnik
aadf2eecb4 Basic data normalizer for ProtocolIO 2019-06-17 12:24:08 +02:00
Urban Rotnik
ec49388283 Add protocol base normalizer class 2019-06-17 12:24:08 +02:00
Jure Grabnar
c1cee07a63 Extract API client constants to constants.rb 2019-06-17 12:24:08 +02:00
Jure Grabnar
a15b1f6dfa Add logging for ApiClient and fix hound formatting 2019-06-17 12:24:08 +02:00
Jure Grabnar
5685709f48 Implement API client for protocols.io 
Closes SCI-3357
 2019-06-17 12:24:07 +02:00
aignatov-bio
68937dd192
Fix RTE import for protocol repository (#1833) 2019-06-14 16:20:27 +02:00
Oleksii Kriuchykhin
8920d38a02 Make repositories more extendable [SCI-3528] 2019-06-06 17:28:59 +02:00
Oleksii Kriuchykhin
6917ea56e8 Fix import of ELN protocols [SCI-3506] 2019-05-29 15:41:54 +02:00
aignatov-bio
3633274c8f
Fix import for eln (#1741) 2019-05-13 10:22:30 +02:00
Anton Ignatov
7c55fcf0cf Merge branch 'master' into master-with-note-section 2019-04-30 12:07:59 +02:00
Jure Grabnar
b37349624a
Merge pull request #1714 from biosistemika/jg_sci_3380 
Add editnew action for editing new office files [SCI-3380]
 2019-04-30 09:57:07 +02:00
Jure Grabnar
ed003aca13 Add editnew action for editing new office files 
Closes SCI-3380
 2019-04-30 08:19:52 +02:00
Anton Ignatov
7d60eb5572 Fix migration issues 2019-04-23 11:11:22 +02:00
Anton Ignatov
aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
aignatov-bio
6b45dcd475
Update eln export for new tinyMCE image format (#1680) 2019-04-19 14:44:40 +02:00
Mojca Lorber
b00cf07684 Add activity for importing inventory items 2019-04-18 15:18:10 +02:00
Oleksii Kriuchykhin
f9832013b0 Improve experiment preview image generation [SCI-3177] 2019-04-17 12:06:46 +02:00
Oleksii Kriuchykhin
e7151e6e6b Disable inventory import activity logging [SCI-3290] 2019-04-03 22:42:33 +02:00
Alex Kriuchykhin
d8ce4d4a91
Merge pull request #1640 from okriuchykhin/ok_SCI_3281_v2 
Fix activity creation for editing wopi file in protocol repository [SCI-3281]
 2019-04-03 21:14:36 +02:00
Oleksii Kriuchykhin
14978f7c1f Fix activity creation for editing wopi file in protocol repository [SCI-3281] 2019-04-03 19:51:54 +02:00
Jure Grabnar
f00f4d39af Refactor step activities using position_plus_one 
Closes SCI-3273
 2019-04-03 13:10:45 +02:00
Jure Grabnar
a2623b5124 Fix non-existant current_team in WOPI create_activity 
Closes SCI-3279
 2019-04-02 14:20:01 +02:00
mlorb
b24a07f1c8
Merge pull request #1616 from mlorb/ml-sci-3237 
Change activities for task protocols [SCI-3237]
 2019-04-01 14:32:16 +02:00
Jure Grabnar
6533368763 Add activity for importing inv items 2019-03-29 15:41:34 +01:00