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10068 commits 69 branches 179 tags 166 MiB
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2137 commits

Author SHA1 Message Date
aignatov-bio 53456988ba
Add bioEddie activities and user licenses [SCI-5845][SCI-5842] (#3411) 
* Add bio eddie licens to users [SCI-5845]

* Add activities for BioEddie [SCI-5842]
 2021-07-19 21:33:28 +02:00
Martin Artnik 9bf02a02b9 Copy fix [SCI-5547] 2021-07-19 13:01:55 +02:00
Martin Artnik 71aa418dc6 Fixed UX issues in user invites modal [SCI-5898] 2021-07-19 12:39:18 +02:00
Oleksii Kriuchykhin 1c8b32dffc Add biomolecular toolkit API proxying endpoint [SCI-5843] 2021-07-16 15:58:40 +02:00
Martin Artnik 96a5b97bdb Implement Save & Register molecule [SCI-5879] 2021-07-15 12:37:04 +02:00
Martin Artnik fb040bee07 Fix styling, functionality issues with invite users modal [SCI-5099] 2021-07-08 16:10:20 +02:00
Oleksii Kriuchykhin 549fc8e5a0 Fix repository cell joining and preloading [SCI-5847] 2021-07-07 17:43:51 +02:00
Oleksii Kriuchykhin d1208bad0b Merge branch 'develop' into features/new_permissions 2021-07-07 13:44:36 +02:00
artoscinote 52946d18e0
Merge pull request #3416 from artoscinote/ma_SCI_5099 
Rework the team invite modal functionality on members page [SCI-5099]
 2021-07-05 12:41:04 +02:00
Martin Artnik 5f528fcdb5 Rework the team invite modal functionality on members page [SCI-5099] 2021-07-05 12:39:54 +02:00
Alex Kriuchykhin 786e072bd7
Merge pull request #3408 from artoscinote/ma_SCI_5822 
Fix typos [SCI-5822]
 2021-07-02 10:11:46 +02:00
Alex Kriuchykhin f835f88e64
Merge pull request #3410 from okriuchykhin/ok_SCI_5097 
Update Invite new user to team modal [SCI-5097]
 2021-06-30 13:34:06 +02:00
Oleksii Kriuchykhin ecec1ce194 Update Invite new user to team modal [SCI-5097] 2021-06-29 13:46:02 +02:00
Martin Artnik e1d8b76b10 Fix typos [SCI-5822] 2021-06-29 10:45:41 +02:00
zmagoD 9c812e84bd setup logic to group assign all team members and handle the unassignments logic 2021-06-27 13:22:19 +02:00
zmagoD a678f07b47 update extends and remove format from links 2021-06-27 09:45:32 +02:00
aignatov-bio 786e74e4de
Add BioEddie integration [SCI-5654][SCI-5657][SCI-5658][SCI-5670] (#3391) 
* Add backend for bioeddie [SCI-5654]

* Add modal for bioeddie [SCI-5654]

* Add bio eddie editor to steps and results [SCI-5654]

* Fix markup and code styling
 2021-06-23 19:48:44 +02:00
zmagoD ad10befcc4 add new manage access permission to PET levels 2021-06-19 17:17:57 +02:00
Martin Artnik afc1b2d8b6 Added experiment code to PDF and DOCX [SCI-5830] 2021-06-18 14:14:02 +02:00
Martin Artnik 0866a2e251 Added experiment ID to card and table views [SCI-5828] 2021-06-18 14:12:59 +02:00
Oleksii Kriuchykhin bb458abec6 Remove old reports code [SCI-5650] 2021-06-18 10:40:00 +02:00
aignatov-bio 7313b5fa16
Add archived and deleted repositories to reports [SCI-5781] (#3387) 
* Add archived and deleted repositories to reports [SCI-5781]

* Small markup fix [SCI-5781]
 2021-06-16 10:56:08 +02:00
Miha Mencin 60c309e1cd
Merge pull request #3375 from artoscinote/ma_SCI_5787 
Fix changing report project, fix typo [SCI-5787]
 2021-06-09 13:43:23 +02:00
aignatov-bio afe2a19c88
Add webhooks management [SCI-5767] (#3376) 
* Add webhooks managment [SCI-5767]

* Markup fixes [SCI-5676]
 2021-06-09 12:53:11 +02:00
Miha Mencin 46e2adf2e3
Merge pull request #3334 from okriuchykhin/ok_SCI_5730 
Improve filtering for inventories [SCI-5730]
 2021-06-09 09:50:56 +02:00
Martin Artnik 2c0b674370 Fix all typos in en.yml 2021-06-08 15:16:25 +02:00
Martin Artnik 6d98b7eb2b Fix changing report project, fix typo [SCI-5787] 2021-06-08 15:07:00 +02:00
Oleksii Kriuchykhin 16bad9eb9c Fix export all functionality [SCI-5776] 2021-06-08 14:21:34 +02:00
zmagoD 784e43e328 create user_assignments for all child objects when the user is attached to the project 2021-06-06 09:54:47 +02:00
aignatov-bio 9559ed88aa
Add webhooks index page [SCI-5766] (#3366) 2021-06-03 14:00:43 +02:00
aignatov-bio 3c7592657c Add activity filters [SCI-5765] 2021-05-31 13:39:10 +02:00
Oleksii Kriuchykhin 92821d7f1e Fix dates formatting in report templates [SCI-5774] 2021-05-31 11:51:04 +02:00
zmagoD ffaf141abf fix failing scenarios 2021-05-29 18:40:26 +02:00
zmagoD 28cb7ee81d add user roles enpoint and update scenarios 2021-05-29 15:28:10 +02:00
zmagoD 7e6789200a fix new API endpoints and add test cases 2021-05-23 17:31:02 +02:00
zmagoD 300c1521fd add new API endpoints and fix/update ExperimentMember and MyModuleMember modules 2021-05-22 18:36:30 +02:00
zmagoD 67cf09e030 log activities on experiment and my_module assignment change 2021-05-22 13:59:27 +02:00
Oleksii Kriuchykhin 29c83ffbb1 Merge branch 'develop' into features/new-reports 2021-05-21 11:04:17 +02:00
Alex Kriuchykhin a5ff0dc928
Merge pull request #3335 from okriuchykhin/ok_SCI_5724 
Fix translations for report project selector [SCI-5724]
 2021-05-20 14:58:29 +02:00
Oleksii Kriuchykhin cb11bbdebd Fix translations for report project selector [SCI-5724] 2021-05-19 23:24:39 +02:00
Oleksii Kriuchykhin 0ff1277dbf Improve filtering for inventories [SCI-5730] 2021-05-19 22:48:52 +02:00
aignatov-bio 7e3a281086 Small fixes for report search [SCI-5551] 2021-05-18 17:00:30 +02:00
Alex Kriuchykhin 8e3e72654c
Merge pull request #3324 from aignatov-bio/ai-sci-5551-add-search-field-to-reports 
Add search field to reports page [SCI-5551]
 2021-05-17 11:50:03 +02:00
Miha Mencin d952edd389
Merge pull request #3316 from okriuchykhin/ok_SCI_5702 
Add generation error states to reports [SCI-5702]
 2021-05-17 10:16:06 +02:00
zmagoD c23c01c01c remove user projects enpoints, fix the role name display 2021-05-16 12:03:16 +02:00
zmagoD de4c28069a fix experiment level styling issues and update the dropdown placeholerds 2021-05-16 11:04:04 +02:00
aignatov-bio e953666762 Add search field to reports page [SCI-5551] 2021-05-13 21:41:26 +02:00
Alex Kriuchykhin 34c79d66b8
Merge pull request #3278 from okriuchykhin/ok_SCI_5664 
Add report templates loader and move out templates from the main source tree [SCI-5664]
 2021-05-13 15:51:24 +02:00
aignatov-bio f465c491c2
Report wizard step 1 update wording [SCI-5716] (#3314) 2021-05-11 21:31:33 +02:00
aignatov-bio 3bd774f8db
Small fixes for report index page [SCI-5695] (#3310) 2021-05-11 21:30:58 +02:00
Oleksii Kriuchykhin a175e83a16 Add generation error states to reports [SCI-5702] 2021-05-11 14:52:02 +02:00
zmagoD 5ee38966a0 Merge branch 'features/new_permissions' of https://github.com/biosistemika/scinote-web into new_perimssions-managing-project-ui 2021-05-11 08:36:39 +02:00
zmagoD 8f9c55d6e4 update locales 2021-05-11 08:30:39 +02:00
zmagoD d145dd6d36 add my module assigments modals 2021-05-09 16:59:10 +02:00
zmagoD ac91d9c2c4 add assign user permission to experiment level 2021-05-08 18:06:07 +02:00
zmagoD c0eb38b564 Merge branch 'develop' of https://github.com/biosistemika/scinote-web into features/new_permissions 2021-05-08 10:33:43 +02:00
Alex Kriuchykhin 7bc6abd9bb
Merge pull request #3290 from okriuchykhin/ok_SCI_5614 
Improve report saving performance and error handling [SCI-5614]
 2021-05-07 11:51:57 +02:00
Alex Kriuchykhin eb773d94c5
Merge pull request #3294 from okriuchykhin/ok_SCI_5619 
Add default settings to existing reports [SCI-5619][SCI-5672]
 2021-05-07 11:38:41 +02:00
Alex Kriuchykhin 7a256838c1
Merge pull request #3292 from aignatov-bio/ai-sci-5638-add-missing-activities-for-new-reports 
Add new activities to reports [SCI-5638]
 2021-05-07 11:26:21 +02:00
Alex Kriuchykhin 4e5e58c66a
Merge pull request #3285 from aignatov-bio/ai-sci-5684-add-warning-modal-for-template-and-project-change 
Add warning modal on project and template change [SCI-5684]
 2021-05-07 10:06:18 +02:00
Oleksii Kriuchykhin b67f2a21f5 Add default settings to existing reports [SCI-5619][SCI-5672] 2021-05-06 17:33:58 +02:00
aignatov-bio bb5f985630 Add new activities to reports [SCI-5638] 2021-05-06 14:03:45 +02:00
Oleksii Kriuchykhin 96f85aeb3c Add report templates loader and move out templates from the main source tree [SCI-5664] 2021-05-06 11:27:05 +02:00
Alex Kriuchykhin 57c90a60c4
Merge pull request #3287 from aignatov-bio/ai-sci-5686-add-default-scinote-report-template 
Add Scinote Report Template [SCI-5686]
 2021-05-06 10:59:33 +02:00
Oleksii Kriuchykhin c0ef2eef3c Improve report saving performance and error handling [SCI-5614] 2021-05-06 10:53:40 +02:00
aignatov-bio 689967f82c Add Scinote Report Template [SCI-5686] 2021-05-05 15:13:06 +02:00
aignatov-bio 3fc4ab9892 Add warning modal on project and template change [SCI-5684] 2021-05-05 12:13:52 +02:00
miha 136f0cd17f SCI-5693 refactor of 2fa procedure 2021-05-04 20:51:34 +02:00
Oleksii Kriuchykhin a307a16033 Fix handsontable assets inclusion in report templates [SCI-5692] 2021-05-04 16:05:19 +02:00
Oleksii Kriuchykhin e98ccd2860 Add confirmation modal for report regeneration action [SCI-5622] 2021-05-03 16:10:14 +02:00
aignatov-bio 705fb1e43d
Add report front-end validations and close wizard modals [SCI-5666] (#3273) 
* Add report front-end validations and close wizard modals

* Add constant to report name validation [SCI-5666]
 2021-05-03 15:24:27 +02:00
aignatov-bio 01dfd305ab
Add warning modal to report edit mode [SCI-5621] (#3266) 
* Add warning modal to report edit mode [SCI-5621]

* Move report editing modal to partial [SCI-5621]
 2021-05-03 15:17:23 +02:00
Oleksii Kriuchykhin 1b8265343e Add full-page display to PDF Report of all pages of the attached Word and PDF files in the Results [SCI-5636] 2021-05-03 11:45:45 +02:00
zmagoD c1d98f421d update scenarios and UI logic to handle project page reload after modal close 2021-05-02 11:22:59 +02:00
zmagoD f1ced42ae6 add filtering logic 2021-04-30 15:25:08 +02:00
zmagoD 11e5662c47 add fe logic for disable/enable fields 2021-04-30 13:26:06 +02:00
aignatov-bio 86854b015d Add third template to reports [SCI-5618] 2021-04-29 15:21:58 +02:00
aignatov-bio 6b023603f9
Add second template for reports [SCI-5617] (#3268) 2021-04-29 10:42:17 +02:00
zmagoD 8a74546cdf fix the logic for addin/editing new project members 2021-04-28 18:02:18 +02:00
Oleksii Kriuchykhin bca88188de Limit created report relations depth to tasks [SCI-5665] 2021-04-28 15:33:30 +02:00
Oleksii Kriuchykhin 8a915c8acf Fix assets inclusion into report [SCI-5680] 2021-04-28 14:37:16 +02:00
aignatov-bio 7c75f170d0
Add repositories settings to report wizard [SCI-5648] (#3269) 
* Add repositories settings to report wizard [SCI-5648]

* Move repositories from report settings to content [SCI-5648]
 2021-04-28 09:54:00 +02:00
zmagoD c136d953d0 create form object for role assigment, create helper object for project member, added new user_projects modal 2021-04-24 18:43:28 +02:00
Oleksii Kriuchykhin 5c63ee55e7 Comment out wicked_pdf initializer patch 2021-04-22 13:59:04 +02:00
aignatov-bio d18a54c874
Update create and update action for reports controller [SCI-5641] (#3260) 
Update create and update action [SCI-5641]
 2021-04-20 13:35:40 +02:00
zmagoD 04ef7a4478 add show and edit permissions modal 2021-04-18 17:19:16 +02:00
zmagoD 3333241c9a add CTA for project members modal SCI-5645 2021-04-18 12:23:29 +02:00
Miha Mencin f95e9402bd
Merge pull request #3258 from okriuchykhin/ok_SCI_5613 
Fix save report PDF to Inventory [SCI-5613]
 2021-04-15 09:30:04 +02:00
Alex Kriuchykhin 80827ce761
Merge pull request #3257 from biosistemika/SCI-5623-add-external-id-to-user 
SCI-5623 add external id to user
 2021-04-14 16:15:43 +02:00
Oleksii Kriuchykhin fe8f006f6e Fix save report PDF to Inventory [SCI-5613] 2021-04-14 16:06:59 +02:00
Oleksii Kriuchykhin 0a9a656313 Add flash message and notification for generated reports [SCI-5552] 2021-04-14 15:45:51 +02:00
Oleksii Kriuchykhin a2a0aabb62 Implement pooling for Report document creation status [SCI-5557] 2021-04-14 15:16:08 +02:00
Oleksii Kriuchykhin df8354bde3 Move the docx creation to the Delayed job [SCI-5560] 2021-04-14 12:39:36 +02:00
aignatov-bio bccd474cc6 Add edit mode for report [SCI-5620] 2021-04-14 11:51:03 +02:00
miha e610683d5c [SCI-5623] added external_id setting to user 2021-04-14 09:44:09 +02:00
aignatov-bio 101d46956c Add logic for preparing wizard data for report [SCI-5593] 2021-04-12 12:42:22 +02:00
aignatov-bio 14f8e97b5f Add I18n for reports wizard second step [SCI-5572] 2021-04-08 12:04:34 +02:00
aignatov-bio e6edbf55f3 Add report wizard step 2 [SCI-5572] 2021-04-08 12:00:08 +02:00
aignatov-bio a1d6c30ef7 Add report wizard step 3 [SCI-5611] 2021-04-07 16:37:08 +02:00
Alex Kriuchykhin aa21d7e415
Merge pull request #3247 from okriuchykhin/ok_SCI_5591 
Add dynamic form elements in report wizard step 1 [SCI-5591]
 2021-04-07 12:05:10 +02:00
aignatov-bio a46b9cb8ea Add document preview to reports [SCI-5559] 2021-04-07 11:15:22 +02:00
Oleksii Kriuchykhin a9ac8452f2 Add dynamic form elements in report wizard step 1 [SCI-5591] 2021-04-06 13:56:24 +02:00
miha 961fa9ab4e [SCI-5631] Add ordering to index endpoint so pagination works, limit maximum page size for kaminari 2021-04-06 09:59:24 +02:00
aignatov-bio 82be23db81 Add project and template selector [SCI-5570] 2021-03-31 15:32:03 +02:00
Miha Mencin 6ad3f7b92f
Merge pull request #3239 from okriuchykhin/ok_SCI_5595_v2 
Remove canvas-to-blob library [SCI-5595]
 2021-03-29 14:03:35 +02:00
Oleksii Kriuchykhin 2f6194a99f Remove canvas-to-blob library [SCI-5595] 2021-03-29 14:02:30 +02:00
miha a82479cd49 unfreeze extents 2021-03-29 11:31:04 +02:00
miha e20191a865 fix code style 2 2021-03-29 11:13:32 +02:00
miha 11284d3b87 [SCI-5577] filter notifications 2021-03-29 09:52:57 +02:00
Alex Kriuchykhin e9c1c27087
Merge pull request #3234 from okriuchykhin/ok_SCI_5594 
Update NewRelic config for production [SCI-5594]
 2021-03-25 19:04:53 +01:00
Oleksii Kriuchykhin 22ca7e5ea6 Update NewRelic config for production [SCI-5594] 2021-03-25 16:02:28 +01:00
aignatov-bio b5cb46908c
Merge pull request #3225 from aignatov-bio/ai-sci-5563-add-reload-action-to-inline-asset 
Add reload action for assets [SCI-5563]
 2021-03-25 15:40:36 +01:00
Oleksii Kriuchykhin 943c01cada Remove simple_token_authentication [SCI-5595] 2021-03-25 14:55:22 +01:00
aignatov-bio 0920d0a5cd Add reports wizzard layout [SCI-5569] 2021-03-25 13:21:54 +01:00
Miha Mencin 4fa1f350e4
Merge pull request #3221 from aignatov-bio/ai-sci-5564-small-breadcrumbs-fixes 
Small breadcrumbs fixes [SCI-5564]
 2021-03-24 09:46:09 +01:00
aignatov-bio 7c573a1ee9 Add reload action for assets [SCI-5563] 2021-03-22 13:02:13 +01:00
Oleksii Kriuchykhin d315b1327b Implement missing missing user smart annotation notifications [SCI-5575] 2021-03-19 17:11:19 +01:00
aignatov-bio d3d79f4288 Small breadcrumbs fixes [SCI-5564] 2021-03-18 14:24:33 +01:00
aignatov-bio 3e5c2e83c7 Update toolbar, add docx and pdf columns [SCI-5549][SCI-5550] 2021-03-17 12:54:25 +01:00
Oleksii Kriuchykhin ab9fd65a19 Add basic API client for BMT [SCI-5531] 2021-03-12 10:53:10 +01:00
Urban Rotnik 8202181095
Merge pull request #3186 from urbanrotnik/ur-sci-4140-fix-notifications 
Bring back old notifications [SCI-4140]
 2021-03-09 14:54:08 +01:00
Urban Rotnik 96ef0c10da
Merge pull request #3148 from urbanrotnik/ur-sci-5450-remamber-user-view-mode 
Store Table/Cards view setting per user [SCI-5450]
 2021-03-08 11:48:33 +01:00
aignatov-bio ea424e4a12
Merge pull request #3161 from mlorb/ml-sci-5323 
Implement styling for the inventories empty state [SCI-5323]
 2021-03-08 11:42:48 +01:00
aignatov-bio a4227874e3 Add empty office files placeholder [SCI-5490] 2021-03-08 11:35:15 +01:00
aignatov-bio df4297f6f7 Merge branch 'develop' into features/local_file_previews 2021-03-08 11:30:47 +01:00
aignatov-bio 8509d86c48
Merge pull request #3196 from aignatov-bio/ai-sci-5484-update-images-extensions 
Fix upercase file extensions [SCI-5484]
 2021-03-08 10:16:59 +01:00
Urban Rotnik 235f19cf25 Store Table/Cards view setting per user 
SCI-5450
 2021-03-04 14:56:59 +01:00
Oleksii Kriuchykhin 2b5709e75f Improve behavior of the scheduler, add caching to system notifications sync service [SCI-5526] 2021-03-02 17:28:07 +01:00
aignatov-bio 468afaaa5a Fix upercase file extensions [SCI-5484] 2021-03-02 15:04:43 +01:00
Oleksii Kriuchykhin d8cffe53c7 Add migration for new user assignments to projects [SCI-5478] 2021-03-01 14:28:21 +01:00
Urban Rotnik 1bb2393655 Use translations 
SCI-4140
 2021-02-25 11:59:26 +01:00
Oleksii Kriuchykhin bdd717b21b Refactor view project users modal [SCI-5387] 2021-02-22 22:37:32 +01:00
Oleksii Kriuchykhin 49194d1a45 Prepare initial user roles in the database [SCI-5435] 2021-02-22 11:58:40 +01:00
Oleksii Kriuchykhin 3b90225c5a Add new permission checking logic [SCI-5436] 2021-02-22 11:55:48 +01:00
aignatov-bio 1cfd9dd85e
Merge pull request #3163 from aignatov-bio/ai-sci-5469-update-experiment-card-css 
Update experiment card css [SCI-5469]
 2021-02-18 10:45:43 +01:00
Urban Rotnik 23409520cc
Merge pull request #3166 from urbanrotnik/ur-sci-5488 
Fix typos and update copies in templates[SCI-5488]
 2021-02-17 14:53:49 +01:00
Oleksii Kriuchykhin afbd763125 Update Doorkeeper configuration [SCI-5497] 2021-02-17 12:54:28 +01:00
Urban Rotnik 41cd8edf29 Fix 'bellow' typo across scinote 2021-02-17 11:56:30 +01:00
Urban Rotnik a628cada6f
Merge pull request #3162 from urbanrotnik/ur-sci-5473-remove-zendesk 
Update knowledge base url [SCI-5473]
 2021-02-16 15:30:15 +01:00
aignatov-bio 0368579799 Update experiment card css [SCI-5469] 2021-02-16 12:42:09 +01:00
Urban Rotnik 335f7b7f9f Update knowledge base url 2021-02-16 12:08:29 +01:00
Mojca Lorber 456d9c713f Implement styling for the inventories empty state 2021-02-15 21:01:31 +01:00
mlorb 20dc9967f5
Merge pull request #3113 from mlorb/ml-sci-5311 
Implement the option of deleting empty folders [SCI-5311]
 2021-02-15 10:27:05 +01:00
Mojca Lorber 7071f4a6c5 Send selected folders param to modal 2021-02-11 18:27:16 +01:00
aignatov-bio 1eff3494fb Fix archived experiments page routes and clean old archive page [SCI-5479] 2021-02-11 14:21:15 +01:00
Mojca Lorber 19733ba7d9 Refactor deleting of empty folders 2021-02-10 22:11:42 +01:00
aignatov-bio 9d3d1f8eac Connect toolbar actions to buttons [SCI-5465] 2021-02-09 15:47:15 +01:00
mlorb 45da42b924
Merge branch 'develop' into ml-sci-5311 2021-02-07 19:20:09 +01:00
aignatov-bio 7c99eaed8f Add folder links to global search [SCI-5407] 2021-02-05 12:39:26 +01:00
Oleksii Kriuchykhin c62c464902 Implement editing options and modals for experiment card [SCI-5367] 2021-02-04 12:06:51 +01:00