scinote-eln/scinote-web
1
1
Fork 0
mirror of https://github.com/scinote-eln/scinote-web.git synced 2024-09-21 23:46:21 +08:00
Code Issues Packages Projects Releases Wiki Activity
6231 commits 70 branches 179 tags 165 MiB
Commit graph

450 commits

Author SHA1 Message Date
Luka Murn b729c06f31 Minor fix 2017-06-08 11:20:11 +02:00
Luka Murn 0aee11d6d8 Hound is love, Hound is life #2 2017-06-07 18:26:32 +02:00
Luka Murn 42f7b4f68d Hound is love, Hound is life 2017-06-07 18:22:15 +02:00
Luka Murn 02dd6636ba Allow saving & editing of reports with repository elements 
Closes SCI-1279.
 2017-06-07 16:55:00 +02:00
Luka Murn b5f6d1da94 Allow custom repositories to be added to reports 2017-06-07 16:54:32 +02:00
Oleksii Kriuchykhin 8b1190060e Add custom repository table [SCI-1274] 2017-06-07 15:23:25 +02:00
Mojca Lorber 51c4eeb106 renaming 2017-06-06 15:50:43 +02:00
Mojca Lorber 13bf4ad229 create new repository 2017-06-06 09:54:39 +02:00
Luka Murn fcc3995049 Merge pull request #647 from biosistemika/master 
Bring latest master changes into custom-repositories
 2017-05-30 14:18:14 +02:00
mz3944 6b8c8deb16 Merge pull request #634 from mz3944/mz-SCI-414 
Uncompleted steps not added to Reports
 2017-05-23 09:58:05 +02:00
Mojca Lorber 9ae615264d add global repositories screen - tab control 2017-05-22 17:54:30 +02:00
Luka Murn 4c5d7267ac Version bump to 1.11.0 2017-05-18 13:48:02 +02:00
Matej Zrimšek f78c80b148 Added possibility to add uncompleted steps to report. [closes SCI-414] 2017-05-17 13:25:21 +02:00
Oleksii Kriuchykhin 72a651c7de Add migrations and models for custom repositories [SCI-1267] 2017-05-16 15:27:36 +02:00
Oleksii Kriuchykhin 5d55720aad Fix steps ordering in reports [SCI-1008] 2017-05-11 15:56:33 +02:00
zmagod 80a0af8c9f replace all ActionController::Base.helpers.sanitize calls with custom sanitize_input method [fixes SCI-1241] 2017-05-11 11:36:47 +02:00
Oleksii Kriuchykhin 0ee7e11620 Add advanced search options [SCI-1158] 2017-05-05 16:41:23 +02:00
Matej Zrimšek 2c76ba9471 Added date format constant. [Fixes SCI-1205] 2017-04-25 16:37:09 +02:00
Luka Murn 61af70668c Bump version to 1.10.0 2017-04-19 09:31:40 +02:00
Zmago Devetak 9c31239318 Merge pull request #552 from biosistemika/release-1.9.0 
Release 1.9.1
 2017-04-12 13:08:37 +02:00
Luka Murn d8c00401cd Update constants.rb 
Bump version to 1.9.1
 2017-04-11 09:10:55 +02:00
Luka Murn a30c7a77e8 Silence Wicked PDF generation 
Closes SCI-1107.
 2017-04-10 14:00:31 +02:00
zmagod 9610c5f5a0 fix info dropdown links [fixes SCI-1141] 2017-04-07 11:31:09 +02:00
okriuchykhin b781ebd6fe Merge pull request #536 from okriuchykhin/ok_SCI_1166 
Whitelist application/zip file type in paperclip for some .xlsx files [SCI-1166]
 2017-04-05 09:55:39 +02:00
Oleksii Kriuchykhin ba4dbe49f8 Whitelist application/zip file type in paperclip for some .xlsx files [SCI-1166] 2017-04-04 10:51:54 +02:00
zmagod e016bda9d2 adds expired days in constant 2017-04-04 10:16:54 +02:00
mlorb 317739af1e Merge pull request #530 from biosistemika/ml_sci_1044 
Add data-hook and yadcf-filter plug-in [SCI-1044]
 2017-03-31 14:00:23 +02:00
Mojca Lorber 6a4faf8765 add color constants 2017-03-31 13:24:08 +02:00
zmagod 0996c14449 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_765 2017-03-27 10:41:58 +02:00
zmagod 4635a3320d Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1003_add_extends 2017-03-24 16:09:28 +01:00
zmagod 94732c6d18 adds delayed zip generator 2017-03-23 15:45:02 +01:00
Luka Murn 541998bde6 Bump version to 1.9.0 2017-03-23 14:37:47 +01:00
zmagod 856a4611c6 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1003_add_extends 2017-03-14 15:58:08 +01:00
zmagod 0c2523beca Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-03-10 16:21:43 +01:00
zmagod 1d42d46c02 fixes bug with step comments 2017-03-09 16:02:52 +01:00
zmagod 3057965940 fix bug with filenames 2017-03-09 11:48:50 +01:00
zmagod 9939d8df06 refactor 2017-03-09 10:51:54 +01:00
zmagod 49f91184da fixes locals 2017-03-09 09:55:15 +01:00
zmagod 5c2e9a4b04 adds extends and fixes report methods 2017-03-08 14:14:03 +01:00
Luka Murn 0916e7e40d Allow upload of .dot, .pot, .rtf files 
Closes SCI-1052.
 2017-03-06 15:01:32 +01:00
zmagod e1b3dcc2ba adds enum extends to report element part of SCI-1003 2017-02-27 13:53:46 +01:00
Luka Murn fecfc9e41d Merge pull request #498 from biosistemika/release-1.8.1 
Release 1.8.1
 2017-02-23 14:57:30 +01:00
Luka Murn 98e2a56670 Bump version to 1.8.1 2017-02-23 14:00:46 +01:00
Luka Murn cb12bfddc0 Merge pull request #497 from biosistemika/release-1.8.0 
Version bump to 1.8.0
 2017-02-23 11:36:24 +01:00
Luka Murn 52ab6d096f Version bump to 1.8.0 2017-02-23 11:15:26 +01:00
okriuchykhin 8e18ff44a6 Merge pull request #479 from okriuchykhin/ok_SCI_999 
Add task complete/uncomplete functionality [SCI-999]
 2017-02-20 15:19:00 +01:00
Oleksii Kriuchykhin f97c20e9b5 Fix hound warnings [SCI-999] 2017-02-13 15:42:28 +01:00
Oleksii Kriuchykhin cf8566df33 Add task complete/uncomplete functionality [SCI-999] 2017-02-10 14:27:20 +01:00
Luka Murn f7bd62547e Refactor teams settings into its own controllers 2017-02-09 14:37:59 +01:00
Luka Murn 5cb3eb5e09 Refactor preferences -> move them to subcontroller, subroute 2017-02-09 11:07:16 +01:00
Oleksii Kriuchykhin 62535a01bd Move teams datatable js code into separate file [SCI-936] 2017-02-03 10:44:42 +01:00
Zmago Devetak 5c9954bb89 Merge pull request #450 from ZmagoD/zd_SCI_939 
Refactor "organizations" to "teams"
 2017-02-01 13:12:02 +01:00
Luka Murn 50b8588cbf Version bump to 1.7.2 2017-01-31 15:49:58 +01:00
Luka Murn db75231617 Update URLs to sciNote support pages 
Closes SCI-978.
 2017-01-31 15:48:56 +01:00
zmagod e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
Luka Murn b2d2f56bdd Version bump to 1.7.1 2017-01-26 17:00:54 +01:00
Luka Murn 042a85af45 Bump version to 1.7.0 2017-01-25 18:22:11 +01:00
Mojca Lorber d669f006b1 fix tables in reports 2017-01-25 15:15:26 +01:00
zmagod 1220466035 fixing hound 2017-01-25 15:00:14 +01:00
zmagod f04a2f663a renamed organizations in config/ 2017-01-25 12:30:11 +01:00
Luka Murn 53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
zmagod 9550c6dd35 fixes highlight.js 2017-01-19 17:09:25 +01:00
Luka Murn cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
okriuchykhin 02bfd19d1c Merge pull request #385 from okriuchykhin/ok_SCI_102 
Fix XSS on activites and throghout the rest of app [SCI-102]
 2017-01-16 11:41:38 +01:00
Oleksii Kriuchykhin 0546716a0b Improve user input sanitization, fix bugs [SCI-102] 2017-01-11 15:50:11 +01:00
Oleksii Kriuchykhin aa2b573278 Enable image preview while editing steps and code style improvements [SCI-694] 2017-01-06 15:58:23 +01:00
Oleksii Kriuchykhin 4fe3030ad4 Freeze WHITELISTED_ATTRIBUTES constatnt [SCI-102] 2017-01-05 16:13:00 +01:00
Oleksii Kriuchykhin 1009347026 Add list of whitelisted attributes [SCI-102] 2017-01-05 15:33:41 +01:00
Luka Murn ef688feb4e Hotfix 1.6.1 
Set confirmed_at to created_at when using no
email confirmations and users sign up by themselves.
 2017-01-05 15:27:18 +01:00
Oleksii Kriuchykhin 6487bd788a Add additional whitelisted tags [SCI-102] 2017-01-05 14:40:38 +01:00
Oleksii Kriuchykhin 9c4191a1e0 Initial code commit [SCI-102] 2017-01-05 13:04:19 +01:00
Luka Murn 3bee9d2e12 Save an (yet unworking) version of user smart annotations 
Used so other devs can start working on smart annotations.
 2017-01-04 10:54:02 +01:00
Luka Murn e16c826bb1 Version bump to 1.6.0 2016-12-22 11:43:52 +01:00
Oleksii Kriuchykhin b537feb8a0 Added large preview [SCI-694] 2016-12-16 17:07:08 +01:00
Oleksii Kriuchykhin 0541253ffa Added modal for images preview [SCI-694] 2016-12-16 15:53:16 +01:00
Zmago Devetak c8631077df Merge pull request #361 from biosistemika/improved-sample-table 
Improved sample table
 2016-12-16 15:37:54 +01:00
zmagod 2426539715 fixes long names in columns dropdown [fixes SCI-784] 2016-12-13 14:54:37 +01:00
zmagod 40fdfef67f setup delayed_paperclip gem 2016-12-08 15:24:14 +01:00
zmagod ac52e643be cleanup direct upload 2016-12-08 11:26:13 +01:00
zmagod 83aae59eed adds sample groups index page 2016-12-02 09:33:09 +01:00
Luka Murn 7309da9d92 Version bump to 1.5.1 2016-12-01 15:54:08 +01:00
Matej Zrimšek 46465060d0 Added automatic sign in with token authentication, needed when signing in from different webpage. [closes SCI-689] 2016-11-30 16:56:56 +01:00
zmagod 1859df0319 fix hound 2016-11-30 09:44:49 +01:00
Luka Murn 76ec77fce4 Merge pull request #329 from biosistemika/simplify-signup 
Merge simplify-signup into master
 2016-11-30 09:41:20 +01:00
zmagod 12848f15fa adds sample_type index view with all crud actions 2016-11-29 17:15:54 +01:00
okriuchykhin f9c8223fe5 Merge pull request #321 from okriuchykhin/ok_SCI_736 
Improve regexp for image whitelisting [SCI-736]
 2016-11-28 15:46:54 +01:00
Oleksii Kriuchykhin d8f8e01a46 Code cleanup, added new image types to whitelist [SCI-736] 2016-11-28 11:13:20 +01:00
okriuchykhin 31f6379866 Merge pull request #318 from okriuchykhin/ok_SCI_736 
Add whitelisting of supported image types [SCI-736]
 2016-11-28 09:32:49 +01:00
Luka Murn d0b86de3a4 Use Rails's email regex 2016-11-25 17:37:27 +01:00
Oleksii Kriuchykhin 74f6455a8f Add whitelisting of supported image types [SCI-736] 2016-11-25 16:12:43 +01:00
Oleksii Kriuchykhin 698e07a3b5 Enable reCaptcha and auto log in on confirm invitation form [SCI-706] 2016-11-24 14:11:02 +01:00
Luka Murn 91ffb232e2 Version bump to 1.5.0 2016-11-24 11:37:45 +01:00
Mojca Lorber beae54e278 remove already_authenticated alert flash 2016-11-23 14:55:41 +01:00
Luka Murn 26d04b1f3c Merge branch 'rich-text-formatting' into 'master' 
Conflicts:
	Gemfile.lock
	app/assets/stylesheets/themes/scinote.scss
 2016-11-17 16:39:33 +01:00
Mojca Lorber 3b7af3e66c fix validation logic 2016-11-11 11:42:16 +01:00
Luka Murn c88f834ba9 Merge pull request #269 from Ducz0r/lm-sci-569 
Add a refactored invite users modal that can be reused throughout application
 2016-11-08 16:57:05 +01:00
zmagod 808ec807c2 added extends file 2016-11-08 11:26:55 +01:00
Luka Murn 6fe0d6b3df A working invite modal! 2016-11-07 09:43:10 +01:00
Luka Murn ccf8932611 Add first version of invite users modal 2016-11-07 09:43:09 +01:00
zmagod 3c9bd6f511 enables notification to be extended 2016-11-02 14:44:16 +01:00
Luka Murn 24cdbedd05 Bump version to 1.4.0 2016-10-25 18:15:53 +02:00
Matej Zrimšek 1b0fb255db Replaced hardcoded big values with infinity constant in fixtures. 2016-10-17 13:52:33 +02:00
Matej Zrimšek a31753ea39 Added additional color constants. Fix Ruby color constants RGB format so no errors occur for external Gems. 2016-10-17 11:57:47 +02:00
Matej Zrimšek f2cd9890dd Replaced hardcoded infinity values with constants. Added quotation marks to Ruby string constants in JS. 2016-10-17 11:57:47 +02:00
Matej Zrimšek a6a2a237aa Removed unneeded ERB tags, which caused error. Minor refactoring. 2016-10-17 11:57:47 +02:00
Matej Zrimšek 0780bd2416 Ruby constants are now automatically available in JS. Refactoring was needed. 2016-10-17 11:57:37 +02:00
Matej Zrimšek a3dfb59558 Added remaining constants. 2016-10-17 11:30:05 +02:00
Matej Zrimšek 21ec05d541 Refactored searches (user and globals earch) and used constants. 2016-10-17 11:17:59 +02:00
Oleksii Kriuchykhin c6fb57318f Added use of constants in JS [SCI-530] 2016-10-13 13:06:11 +02:00
zmagod 42a30576e3 removed introductory popup [fixes SCI-534] 2016-10-11 08:33:50 +02:00
Luka Murn 448daab7c8 Merge pull request #207 from biosistemika/add-deface-hotfix 
Merge hotfix 1.3.1 into master
 2016-10-07 18:26:13 +02:00
Luka Murn 860c3f9bf1 Bump version to 1.3.1 2016-10-07 15:57:01 +02:00
Oleksii Kriuchykhin 4e2ad1d5e6 Fix the issues after code review [SCI-442] 2016-10-05 15:54:31 +02:00
Oleksii Kriuchykhin 8907e54b49 Global notifications index page added [SCI-442] 2016-10-05 15:51:11 +02:00
Zmago Devetak 91c7d8a952 Merge pull request #176 from ZmagoD/zd_SCI_474 
Unify the comments
 2016-10-03 15:26:17 +02:00
Luka Murn 49c5474219 Merge pull request #178 from mz3944/mz_help_button_SCI_13_v2 
Fixed wrong CSS formatting and added release notes link to help link.
 2016-09-30 08:27:57 +02:00
Matej Zrimšek a6324d61c5 Fixed wrong CSS formatting, added release notes link to help links, and links now open in new tab. 2016-09-29 14:27:26 +02:00
Luka Murn f994469cb5 Bump version to 1.3 2016-09-29 13:04:28 +02:00
zmagod 1eb9f772f4 refactor sciNote comments js and unified all comments behavior [fixes SCI-474] 2016-09-27 10:30:48 +02:00
zmagod 02bfa1949e fixed project comments 2016-09-27 09:00:02 +02:00
mz3944 1c1a7c231e Merge pull request #169 from mz3944/mz_help_button_SCI_13 
Added help dropdown. [SCI-13]
 2016-09-23 13:04:38 +02:00
Matej Zrimšek fc86b7b1fd Added help dropdown. [SCI-13] 2016-09-23 12:52:38 +02:00
Oleksii Kriuchykhin e8ac754829 Fix issue with long tags in dropdown list [fixes SCI-470] 2016-09-23 11:05:17 +02:00
Matej Zrimšek c6a23aab98 Added missing validations for text fields. Added text trimming, which removes spaces from beginning and ending of text. [fixes SCI-408] 2016-09-21 19:37:36 +02:00
zmagod 06b1992e94 Merge branch 'zd_SCI_436' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_436 2016-09-21 19:20:55 +02:00
zmagod 9f56df02d2 removes comment tab and add comment in the info tab [fixes SCI-436] 2016-09-20 18:53:51 +02:00
Matej Zrimšek c2f0106993 Replaced hardcoded values with unified constants. Minor refactoring. Also front-end error handling was updated accordingly. [fixes SCI-408] 2016-09-16 15:56:44 +02:00
zmagod e3ae22763e removed comments tab in protocol step 2016-09-15 08:46:14 +02:00
Jure Grabnar e07d73420d Remove spaces inside percent literal delimiters 
I mean cmon, even dogs are now barking we shouldn't be using them,
hello?!
 2016-09-13 09:54:40 +02:00
Jure Grabnar 6519e8dbb1 Add e-notation preprocessing to formulas 
SCI-350 #close
 2016-09-13 09:46:22 +02:00
Jure Grabnar e5b2f29b42 Add libraries for HoT formulas 2016-09-13 09:44:17 +02:00
Luka Murn ed72996523 Bump version to 1.2.3 2016-09-08 15:37:32 +02:00
Matej Zrimšek 40355dcc97 If file is recognized as office file, it's allowed to be any office file type. 2016-09-07 14:04:11 +02:00
Matej Zrimšek f4d4977457 Removed header checking and added office file types grouping exceptions when checking file spoofing [fixes SCI-418] 2016-09-07 13:04:18 +02:00
Luka Murn 77f00bf3a7 Bump version to 1.2.2 2016-09-01 11:34:28 +02:00
Luka Murn 9ceea255b2 Bump version to 1.2.1 2016-08-31 14:29:27 +02:00
Luka Murn ae9959dc3c Bump version to 1.2.0 2016-08-31 11:22:03 +02:00
Matej Zrimšek e3a7f45fdf Merge branch 'master' into mz_file_upload_and_client_side_upgrade 
Conflicts:
	app/assets/javascripts/application.js
	app/views/results/_result_asset.html.erb
	app/views/steps/_step.html.erb
 2016-08-26 11:13:40 +02:00
Zmago Devetak 0cfc758f43 Merge pull request #102 from ZmagoD/zd_SCI_336 
implement first time popup logic
 2016-08-26 09:19:36 +02:00
Matej Zrimšek 04d9163ff6 Paperclip file spoofing corrected/modified. 2016-08-25 18:57:06 +02:00
Luka Murn 15c0baeee8 Add delete project comment functionality 
This commit also removes the old code from @bberic.
 2016-08-25 13:51:30 +02:00
zmagod 5fabe06b8d implement first time popup logic 2016-08-25 11:44:49 +02:00
zmagod cac5033eba set ajax for workflow img 2016-08-19 15:36:12 +02:00
Matej Zrimšek 27a9dac412 File permissions corrected, with some refactoring. 2016-08-17 18:23:24 +02:00
Matej Zrimšek 951cf67b3d A lot of file uploading edge cases considered. File uploading is now actually redirected to S3 server, as before was not. Error functions changed and error output format specified, which should be used consistently throughout the application. Some other refactoring. 2016-08-17 18:08:21 +02:00
Jure Grabnar 555ed05ae6 Refactor/DRY dropdown actions code for experiment 2016-08-12 10:18:35 +02:00
zmagod a4ec558596 start to implement project overview page 2016-08-04 12:57:33 +02:00
zmagod 352944fc33 added new/edit experiment modals 2016-07-28 14:44:44 +02:00
Luka Murn 076b67620f Migration GitLab -> GitHub 2016-07-21 13:11:15 +02:00
Luka Murn 055298fee8 Initial commit. 2016-02-12 16:52:43 +01:00