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Author SHA1 Message Date
Jure Grabnar bc4b07cc0f Refactor hardcoded protocol_source in SearchService 2019-06-28 02:26:31 +02:00
Jure Grabnar 0a77cedaf8 Fix sorting of external protocols and start showing results 2019-06-27 22:48:56 +02:00
Urban Rotnik 9cb4454537 New implementation for attachments creation 2019-06-27 17:02:06 +02:00
Urban Rotnik 2761079479 Add modal for import 2019-06-27 16:46:02 +02:00
Jure Grabnar 06b8d1fda7 Update ApiClient tests 
Closes SCI-3434
 2019-06-27 14:54:19 +02:00
Jure Grabnar d31f978e55 DRY up protocols importer services errors 2019-06-27 10:11:36 +02:00
Mojca Lorber 9fd83d54a0 Put network error handeling into api and refactor errors 2019-06-26 14:04:03 +02:00
Mojca Lorber ebcaa4b014 Implement protocols.io error handling for api client and normalizer 2019-06-18 14:01:57 +02:00
Urban Rotnik c691ad80b5 Add fields to query params for ApiClient 2019-06-17 12:24:16 +02:00
Urban Rotnik 88d96c0938 Use service in controller 2019-06-17 12:24:15 +02:00
Urban Rotnik 7fad5fc594 Add search service and normalizer for list 2019-06-17 12:24:15 +02:00
Jure Grabnar eb0d677a36 Refactor pio_protocol -> built_protocol 2019-06-17 12:24:13 +02:00
Urban Rotnik 0d43ecdfab Import protocol service after object is built 2019-06-17 12:24:11 +02:00
Jure Grabnar eb275c4d12 Add tests for BuildProtocolService and fix bugs 2019-06-17 12:24:11 +02:00
Jure Grabnar 362b0cd45d Hound fixes 2019-06-17 12:24:11 +02:00
Jure Grabnar 640f6c1211 Fix tests after BuildProtocolFromClientService refactor 
Closes SCI-3544
 2019-06-17 12:24:11 +02:00
Jure Grabnar 1e8627c450 Refactor ImportProtocol service to BuildProtocolService 
Closes SCI-3544
 2019-06-17 12:24:10 +02:00
Urban Rotnik a15596a126 Add ImportProtocolService 2019-06-17 12:24:10 +02:00
Oleksii Kriuchykhin 8920d38a02 Make repositories more extendable [SCI-3528] 2019-06-06 17:28:59 +02:00
Alex Kriuchykhin 36255f82ed
Merge pull request #1817 from okriuchykhin/ok_SCI_3522 
Add system notifications service to health check endpoint [SCI-3522]
 2019-06-04 14:41:43 +02:00
Oleksii Kriuchykhin 552f69b9b1 Add system notifications service to health check endpoint [SCI-3522] 2019-05-31 15:52:47 +02:00
Luka Murn b21bdddf15 Rename permision_eval - permission_eval 
Hopefully this will help with getting rid of all the errors
that we've been receiving for PermissionEval.

Closes SCI-2991.
 2019-05-31 09:56:54 +02:00
Oleksii Kriuchykhin 5a9640c5d1 Add aditional checks for inventory state objects [SCI-3412] 2019-05-27 17:32:21 +02:00
Mojca Lorber 5c847d5b5d Change author of copied inventory item 2019-05-13 15:37:36 +02:00
Anton Ignatov 652fba0e23 Merge branch 'master-with-note-section' 2019-05-13 11:08:11 +02:00
Urban Rotnik 2364c2653f Add bulk insert for UserSystemNotifications, New service for sending emails 2019-05-08 08:38:10 +02:00
Anton Ignatov 7f296b35fa Update team exporter for new tinymce images 2019-05-07 13:22:55 +02:00
Oleksii Kriuchykhin 3c1774d330 Fix sorting by user name with search parameter in inventories [SCI-3391] 2019-04-25 16:29:41 +02:00
aignatov-bio 6968060078
Fix user order bug (#1687) 2019-04-19 15:24:13 +02:00
Alex Kriuchykhin 8fa6bbc0ab
Merge pull request #1679 from okriuchykhin/ok_SCI_3177 
Improve experiment preview image generation [SCI-3177]
 2019-04-17 20:35:29 +02:00
Alex Kriuchykhin b4cf665c21
Merge pull request #1673 from okriuchykhin/ok_SCI_3294 
Fix team export/import for new activities [SCI-3294]
 2019-04-17 12:49:45 +02:00
Oleksii Kriuchykhin f9832013b0 Improve experiment preview image generation [SCI-3177] 2019-04-17 12:06:46 +02:00
Oleksii Kriuchykhin 2320941b5d Fix team export/import for new activities [SCI-3294] 2019-04-15 15:13:10 +02:00
Alex Kriuchykhin 3250ab70f4
Merge pull request #1668 from okriuchykhin/ok_SCI_3292_v2 
Switch to kaminari pagination in global activities [SCI-3292]
 2019-04-12 16:04:48 +02:00
Oleksii Kriuchykhin 231106e131 Switch to kaminari pagination in global activities [SCI-3292] 2019-04-12 15:37:45 +02:00
aignatov-bio 8ba0555922
Add check for tasks complete in project notifications (#1657) 2019-04-12 09:17:34 +02:00
Oleksii Kriuchykhin d378e33038 Improve global activities pagination and fetching [SCI-3292] 2019-04-10 15:45:17 +02:00
Oleksii Kriuchykhin 01ffb43c23 Include old activites assigned to the task [SCI-3285] 2019-04-02 18:37:55 +02:00
Urban Rotnik 86ddbc68b6 fixup! Show date actual value without link 2019-04-02 14:21:06 +02:00
Urban Rotnik 8eaeeee9f8 Show date actual value without link 2019-04-02 13:15:34 +02:00
Urban Rotnik 6ec22c0b3b
Merge pull request #1618 from urbanrotnik/ur-sci-3240-missing-activities-of-intentory 
Missing activities, fix for showing report name, add step positions, fixed links [SCI-3240] [SCI-3246]
 2019-04-02 11:02:57 +02:00
aignatov-bio daaa6a367b
Adding custom scrollbar to global activities [SCI-3206] (#1623) 
* Adding custom scrollbar to global activities
 2019-04-02 09:56:50 +02:00
Urban Rotnik b91f08fe99 Add activity for copying Inventory and Invetory item 2019-04-01 15:40:00 +02:00
Alex Kriuchykhin b3aa6be23d
Merge pull request #1621 from okriuchykhin/ok_SCI_3255 
Add global activities to reports [SCI-3255]
 2019-04-01 15:07:06 +02:00
Jure Grabnar e165459ef5
Merge pull request #1574 from jbargu/jg_sci_3149_3163 
Valid smart annotation links of smart annotation imported within protocol [SCI-3149, 3163]
 2019-04-01 14:32:54 +02:00
Jure Grabnar 83130426e2
Merge pull request #1617 from jbargu/jg_3244 
Duplicated activity, report activity ... [SCI-3244]
 2019-04-01 14:31:53 +02:00
Jure Grabnar 111b0e2b7f
Merge pull request #1615 from jbargu/jg_sci_3252 
Change breadcrumbs for copy as template experiment, missing activity for move workflow [SCI-3252]
 2019-04-01 12:30:48 +02:00
Oleksii Kriuchykhin 98e58ff7eb Add global activities to reports [SCI-3255] 2019-04-01 11:26:51 +02:00
Jure Grabnar 3a79f7ca01 Add activity to save_pdf_to_inventory_item 2019-03-29 16:01:36 +01:00
Jure Grabnar 8bc10e1ca7 Change breadcrumbs for cloning experiment to destination project 2019-03-29 09:52:07 +01:00
aignatov-bio b51dcc9d75
Adding children selector to global activities subjects [SCI-3247] (#1605) 
* Adding children selector to global activities subjects

* Fix naming, add seperate check for project id
 2019-03-29 09:26:27 +01:00
Oleksii Kriuchykhin d7d45bec70 Fix links for archived objects in global activities [SCI-3229] 2019-03-28 13:43:50 +01:00
Matej Zrimšek 318c322a1c Fix sorting of custom columns on repository datatables 2019-03-27 12:58:55 +01:00
Matej Zrimšek 632835cf30 Fix fetching assigned repository rows when using filter & refactor it 2019-03-27 12:58:55 +01:00
Oleksii Kriuchykhin 2ff43a3320 Change filtering logic when no filters are selected [SCI-3223] 2019-03-26 16:04:03 +01:00
Alex Kriuchykhin 935e3a65cf
Merge pull request #1586 from okriuchykhin/ok_SCI_3199 
Fix multiple bugs in global activities [SCI-3197][SCI-3199][SCI-3213][SCI-3225]
 2019-03-26 16:02:44 +01:00
Miha Mencin 9a30d7be9d SCI-3232 renaming the attribute name so it doesnt get 'constantized' 2019-03-26 11:39:54 +01:00
Oleksii Kriuchykhin e3a3ec4491 Fix multiple bugs in global activities [SCI-3197][SCI-3199][SCI-3213][3225] 2019-03-25 17:38:13 +01:00
Miha Mencin 4a87216a3d
Merge branch 'master' into features/global-activities 2019-03-25 14:35:24 +01:00
Jure Grabnar 5de51f9c58 Prevent smart annotations accessing other teams when importing protocol 
Closes SCI-3163
 2019-03-20 12:58:22 +01:00
Mojca Lorber 4f9814b884 Merge branch 'features/global-activities' of github.com:biosistemika/scinote-web into ml-sci-3021 2019-03-20 11:03:00 +01:00
Anton Ignatov 29b67be127 Fix team selection in global activities and add link from navbar 2019-03-20 10:33:22 +01:00
Mojca Lorber 70eebca5ee experiment activities refactoring 2019-03-19 15:33:57 +01:00
Urban Rotnik 1017836c0e Activities service fix 2019-03-19 14:12:39 +01:00
Urban Rotnik fe35c805b7 Add model breadcrumbs, update activities_helper 2019-03-19 14:01:06 +01:00
Anton Ignatov 87280f083a [SCI-3166] Finalize global activities front end 2019-03-19 13:50:55 +01:00
Oleksii Kriuchykhin 0c71493fdb Add viewing permissions for global activities [SCI-2997] 2019-03-18 15:38:19 +01:00
Urban Rotnik b8e84b5685 Add logic for saving message items values and types 2019-03-11 08:37:22 +01:00
Urban Rotnik 117944117b Add service for activity creation 2019-03-11 08:36:15 +01:00
Miha Mencin 6deaff6382 fixing hound errors 2019-03-04 18:36:32 +01:00
Miha Mencin 844303ae7c SCI-3119 schedule the creaton of template 2019-03-01 17:47:04 +01:00
aignatov-bio 9a007b5d75
Merge pull request #1542 from aignatov-bio/ai-sci-3108-missing-user-name-in-activity 
Fix missing user name in activty, when moving experiment [SCI-3108]
 2019-03-01 14:16:59 +01:00
Alex Kriuchykhin 985820a97c
Merge pull request #1527 from okriuchykhin/ok_SCI_3101 
Move templates project creation for new team to delayed job [SCI-3101]
 2019-03-01 13:55:49 +01:00
Oleksii Kriuchykhin 1fedb4c91e Improve speed of index query in projects overview service [SCI-3107] 2019-02-28 17:46:34 +01:00
Anton Ignatov 9e472c0ccf Fix missing user name in activty, when moving experiment 2019-02-28 16:06:23 +01:00
Oleksii Kriuchykhin 0266f6bd3c Change search on subject query constaruction logic [SCI-3014] 2019-02-27 13:21:05 +01:00
Anton Ignatov 978c4bcb69 Fixed, trying to save object instead name 2019-02-27 10:43:46 +01:00
Oleksii Kriuchykhin 74a60d443d Merge branch 'features/global-activities' into ok_SCI_3014_v2 2019-02-26 13:46:25 +01:00
Oleksii Kriuchykhin a0d2f7c676 Move templates project creation for new team to delayed job [SCI-3101] 2019-02-26 13:32:00 +01:00
Oleksii Kriuchykhin 61147b480c Add main global activities bussiness logic [SCI-3014] 2019-02-26 11:01:15 +01:00
Urban Rotnik 5a123d26ac Activity model update 2019-02-26 07:15:05 +01:00
Urban Rotnik 3ad6cee766 Fix tests, remove nullable field 2019-02-25 16:50:38 +01:00
Urban Rotnik 7b6c6c414d Merge branch 'master' into features/templates 2019-02-19 14:46:15 +01:00
aignatov-bio fcdb4e7a92
Merge pull request #1500 from biosistemika/features/system-notifications 
Features/system notifications
 2019-02-19 13:51:18 +01:00
Urban Rotnik f63eaaefe7 Add user_system_notification records when syncing notifications, update email sending 2019-02-19 11:22:58 +01:00
Oleksii Kriuchykhin c186498a5e Merge branch 'features/templates' into ok_SCI_3037 2019-02-15 10:47:38 +01:00
Alex Kriuchykhin 185e3b4832
Merge pull request #1495 from okriuchykhin/ok_SCI_3039 
Create templates project when syncing templates if team doesn't have it [SCI-3039]
 2019-02-14 17:40:01 +01:00
Mojca Lorber 343a46584f Rename scope 2019-02-14 14:54:04 +01:00
Mojca Lorber 0e14c126e5 Add scope instead of method for active my_module_group 2019-02-14 10:53:48 +01:00
Urban Rotnik 5b55860dea Add scheduler 2019-02-13 15:48:15 +01:00
Urban Rotnik 9f3187abdf Add service for sync system notifications 2019-02-13 15:48:15 +01:00
Oleksii Kriuchykhin da30d187a6 Create templates project when syncing templates if team doesn't have it [SCI-3039] 2019-02-13 15:17:33 +01:00
Oleksii Kriuchykhin f3ad4f7fc9 Fix failing test [SCI-3037] 2019-02-12 13:39:38 +01:00
Mojca Lorber d706a18e2d Add flag for archived tasks to experiment exporter 2019-02-12 13:29:48 +01:00
Oleksii Kriuchykhin 7854b9d281 Merge branch 'features/templates' into ok_SCI_3037 2019-02-12 11:18:31 +01:00
Oleksii Kriuchykhin 445098fe45 Fix protocols in team export service [SCI-3037] 2019-02-12 10:56:15 +01:00
Alex Kriuchykhin b71c9d96a2
Merge pull request #1476 from okriuchykhin/ok_SCI_2944 
Add test for templates service [SCI-2944]
 2019-02-12 09:39:03 +01:00
Jure Grabnar 0fa403d6b0 Refactor tests fro experiment import 
Closes [SCI-2946]
 2019-02-06 14:27:43 +01:00
Matej Zrimšek f68adf1e5e Fix workflow image loading for moved experiments [SCI-3003] 2019-02-06 07:51:43 +01:00
Oleksii Kriuchykhin 19f1585352 Add test for templates service [SCI-2944] 2019-02-01 18:06:36 +01:00
Urban Rotnik 6f7fcb0831 Refactor method clone_experiment_as_template into service object 
[SCI-2925]
 2019-01-31 07:13:40 +01:00
Oleksii Kriuchykhin cc57a8d4ef Fix template project name generation [SCI-2939] 2019-01-30 10:56:22 +01:00
Oleksii Kriuchykhin cc92de3726 Merge latest features/templates [SCI-2939] 2019-01-30 10:43:54 +01:00
Luka Murn 1f7bca485a
Merge pull request #1471 from biosistemika/master 
Merge master into features/templates
 2019-01-29 10:14:09 +01:00
Oleksii Kriuchykhin f7b73c617a Fix code styling [SCI-2939] 2019-01-28 15:37:24 +01:00
Urban Rotnik 4cf12d12d1 Refactor 'move_experiment' method into service object 
Jira Ticket: SCI-2926
 2019-01-28 11:45:36 +01:00
Oleksii Kriuchykhin bd2efa55ac Add templates business logic [SCI-2939] 2019-01-25 10:55:08 +01:00
Urban Rotnik f1d59e65f3 Add module and rename service object 2019-01-18 16:56:33 +01:00
Urban Rotnik 47cc6a9d10 Refactor workflow_image_generation and move to service class 2019-01-18 16:56:33 +01:00
Oleksii Kriuchykhin fdf7db425b Merge branch 'master' into features/templates 2019-01-18 14:41:21 +01:00
Jure Grabnar 761932282b Fix Hound formatting 
Closes SCI-2937
 2019-01-16 16:11:38 +01:00
Jure Grabnar d1f966ee05 Add importing of the experiment templates 2019-01-16 15:54:03 +01:00
Jure Grabnar 5b496a85d3 Experiment exporting works 2019-01-16 08:37:05 +01:00
Jure Grabnar 0184c97c61 Refactor TeamExporter into ModelExporter 2019-01-16 08:00:01 +01:00
Jure Grabnar ff17a7e367 Fix S3_BUCKET not being defined 2019-01-14 16:49:08 +01:00
Alex Kriuchykhin c2b38af91e
Merge pull request #1439 from okriuchykhin/ok_SCI_2888 
Rename CORE_API_V1_PREVIEW env. variable to CORE_API_V1_ENABLED [SCI-2888]
 2019-01-10 11:05:07 +01:00
Oleksii Kriuchykhin 6a64b23f90 Rename CORE_API_V1_PREVIEW env. variable to CORE_API_V1_ENABLED [SCI-2888] 2019-01-04 10:44:38 +01:00
Oleksii Kriuchykhin d5c07fd22a Improve rendering speed of inventory table [SCI-2910] 2018-12-13 16:17:22 +01:00
Luka Murn f56847e44a Refactor team importer to use closed File.open blocks 2018-12-05 18:34:32 +01:00
Alex Kriuchykhin d524a1d508
Merge pull request #1364 from okriuchykhin/ok_SCI_2778 
Add time format selection to settings [SCI-2778]
 2018-11-19 10:17:09 +01:00
Oleksii Kriuchykhin 7642d8d472 Fix sorting on projects table [SCI-2860] 2018-11-15 10:36:37 +01:00
Luka Murn e9c0b34662 Merge branch 'core-api' into 'master' 
Conflicts:
	Gemfile
	app/services/api.rb
	config/initializers/api.rb
	config/initializers/extends.rb
	config/routes.rb
	db/schema.rb
	spec/controllers/api/api_controller_spec.rb
 2018-11-14 16:59:04 +01:00
Oleksii Kriuchykhin 537de596a7 Merge latest master [SCI-2778] 2018-11-14 13:05:57 +01:00
mz3944 056efe170b
Merge pull request #1358 from mz3944/mz-SCI-2646 
Removal of the temporary files for export all [SCI-2646]
 2018-11-13 20:31:04 +01:00
Luka Murn 84df2c81f9 Merge branch 'features/export-all' 
Conflicts:
	app/controllers/experiments_controller.rb
	app/controllers/my_modules_controller.rb
	db/schema.rb
 2018-11-13 09:14:02 +01:00
Oleksii Kriuchykhin 145c66a834 Fix user counters on projects overview page [SCI-2847] 2018-11-12 11:52:38 +01:00
Oleksii Kriuchykhin 8d0dbc7076 Add time format selection to settings [SCI-2778] 2018-11-09 16:19:40 +01:00
Oleksii Kriuchykhin 1feb13c74a Improve counters on projects overview table [SCI-2785] 2018-11-07 22:27:57 +01:00
Matej Zrimšek 8fe0249f45 Fix test for repository ZIP export & return path for ZIP exports [SCI-2646] 2018-11-07 05:04:29 +01:00
Alex Kriuchykhin 2b4ef619c2
Merge pull request #1345 from okriuchykhin/ok_SCI_2785 
Show all experiments and tasks for archived projects [SCI-2785]
 2018-10-29 11:56:38 +01:00
Oleksii Kriuchykhin 04ff5870af Rename user_id to sub in JWT [SCI-2814] 2018-10-28 14:34:51 +01:00
Oleksii Kriuchykhin e9a8826a1e Show all experiments and tasks for archived projects [SCI-2785] 2018-10-24 18:49:59 +02:00
Matej Zrimšek c8d170f9ec Add default page size when it's not in request params when fetching projects 2018-10-23 19:51:50 +02:00
Oleksii Kriuchykhin 02f536cd08 Merge latest features/export-all [SCI-2733] 2018-10-16 17:20:19 +02:00
Jure Grabnar 26df1e5a98 Add export project modal 
Closes [SCI-2645]
 2018-10-16 11:00:38 +02:00
Matej Zrimšek 1bf16537f6 Add PDF content to the export all ZIP [SCI-2641] 2018-10-14 23:56:10 +02:00
Oleksii Kriuchykhin f221d71bbc Fix datatables state restore [SCI-2733] 2018-10-12 15:15:43 +02:00
Oleksii Kriuchykhin 8cf59d8d22 Add request rate throttling for API [SCI-2770] 2018-10-11 09:48:06 +02:00
Oleksii Kriuchykhin af02f29fb5 Implement user state saving for projects overview [SCI-2733] 2018-10-10 16:15:31 +02:00
Alex Kriuchykhin 16b29b50a5
Merge pull request #1321 from okriuchykhin/ok_SCI_2731 
Add Projects view - list/table view [SCI-2731]
 2018-10-08 17:53:35 +02:00
Jure Grabnar d7c875135e
Merge pull request #1304 from jbargu/jg_zipfile_structure 
Create zipfile structure for export all, implement inventory CSV for export [SCI-2640] [SCI-2642] [SCI-2643] [SCI-2644]
 2018-10-05 15:36:56 +02:00
Oleksii Kriuchykhin 492a5de19e Add Projects view - list/table view [SCI-2731] 2018-10-01 15:39:42 +02:00
Jure Grabnar 553ac4c360 Refactor code according to PR review 
PR review: https://github.com/biosistemika/scinote-web/pull/1304

Closes: [SCI-2640], [SCI-2642], [SCI-2643], [SCI-2644].
 2018-09-30 16:37:18 +02:00
Oleksii Kriuchykhin 2508394924 Refactor Projects view - cards view [SCI-2730] 2018-09-27 10:43:44 +02:00
Jure Grabnar a3d7d37081 Format according to Hound bot #2 2018-09-23 11:30:20 +02:00
Jure Grabnar 64a6ed7ffe Format according to houndbot 2018-09-23 11:14:59 +02:00
Oleksii Kriuchykhin 7f7ece2be0 Improve delayed jobs for TempFile deletion and Asset text extraction [SCI-2738] 2018-09-21 17:46:18 +02:00
Oleksii Kriuchykhin 84428b37c2 Add project view JSON endpoints [SCI-2728] 2018-09-21 10:39:20 +02:00
Jure Grabnar d783c34d33 Clean some minor artefacts 2018-09-16 23:52:36 +02:00
Jure Grabnar f8b1db7f72 Fix repository export and relative hyperlinks 2018-09-16 23:01:44 +02:00