Alex Kriuchykhin
1bde37db78
Merge branch 'develop' into ok_SCI_5579
2021-10-28 13:26:27 +02:00
Oleksii Kriuchykhin
2fb71aa312
Add API endpoint for Cloning Experiments [SCI-6088]
2021-10-28 12:28:46 +02:00
aignatov-bio
9e3d64bbb6
Fix projects list in clone experiment dropdowns [SCI-6139] ( #3592 )
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Co-authored-by: Anton <anton@scinote.net>
2021-10-27 13:55:49 +02:00
aignatov-bio
22034089a6
Update experiment move service [SCI-6149] ( #3599 )
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* Update experiment move service [SCI-6149]
* Move permission check to helper [SCI-6149]
Co-authored-by: Anton <anton@scinote.net>
2021-10-27 13:48:52 +02:00
Alex Kriuchykhin
f6a30cac6c
Merge pull request #3593 from okriuchykhin/ok_SCI_6134
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Change Dashboard::RecentWorkService to use new user roles [SCI-6134]
2021-10-26 11:43:54 +02:00
aignatov-bio
aa4b765407
Update assign/unassign rows to task [SCI-6150] ( #3604 )
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Co-authored-by: Anton <anton@scinote.net>
2021-10-26 11:41:08 +02:00
aignatov-bio
edb09dd099
Update copy experiment permission checks [SCI-6147] ( #3598 )
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Co-authored-by: Anton <anton@scinote.net>
2021-10-26 11:40:54 +02:00
Alex Kriuchykhin
ac176f6c9e
Merge pull request #3596 from okriuchykhin/ok_SCI_6113
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Add user roles to team importer/exporter [SCI-6113]
2021-10-25 14:06:17 +02:00
Oleksii Kriuchykhin
b10a6c8b7d
Add user roles to team importer/exporter [SCI-6113]
2021-10-14 13:21:36 +02:00
artoscinote
c63090da8c
Fixed scopes and added permission checks to quick create services [SCI-6135] ( #3584 )
2021-10-14 13:13:29 +02:00
Oleksii Kriuchykhin
bc806f0c86
Change Dashboard::RecentWorkService to use new user roles [SCI-6134]
2021-10-13 14:12:24 +02:00
artoscinote
75d6a17cb7
Fix ProjectOverviewService and automatic project assignment [SCI_6117] ( #3572 )
2021-10-04 11:20:47 +02:00
aignatov-bio
3eb2c98cce
Update render permission for smart annotation [SCI-6112] ( #3571 )
2021-10-01 14:23:29 +02:00
artoscinote
63923f0e63
Skip inaccessible elements when generating reports [SCI-6109] ( #3569 )
2021-10-01 14:18:40 +02:00
artoscinote
f68d724202
Rework experiment permissions [SCI-6054] ( #3538 )
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* Rework experiment permissions [SCI-6054]
2021-09-30 11:32:11 +02:00
Martin Artnik
49b9ee37cc
Merge branch 'develop' into features/bmt-search
2021-09-24 11:01:27 +02:00
aignatov-bio
4472eb1023
Fix docx preview render [SCI-6035] ( #3559 )
2021-09-24 10:01:55 +02:00
Alex Kriuchykhin
0db9bf46ff
Merge pull request #3528 from okriuchykhin/ok_SCI_6036
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Prevent creation of duplicated repository cells [SCI-6036]
2021-09-17 16:37:48 +02:00
Oleksii Kriuchykhin
e8e1ee3011
Prevent creation of duplicated repository cells [SCI-6036]
2021-09-09 14:24:35 +02:00
Oleksii Kriuchykhin
7041cc19af
Fix BMT base URL path in requests [SCI-6010]
2021-09-07 16:28:14 +02:00
Oleksii Kriuchykhin
3cab5751e7
Add rake task for creation and syncing structure of BMT inventory [SCI-6010]
2021-09-07 12:17:09 +02:00
Martin Artnik
7e6ca3be8a
Merge branch 'develop' into features/new_permissions
2021-09-06 10:33:32 +02:00
Oleksii Kriuchykhin
b32477a933
Add error message in report in case of file preview generation failure [SCI-5848]
2021-08-30 14:18:31 +02:00
Martin Artnik
896f0ce1e3
Implemented applying BMT filters [SCI-5980]
2021-08-30 10:49:15 +02:00
Oleksii Kriuchykhin
d4ef2b1bd4
Add BMT inventory model [SCI-6009]
2021-08-30 10:49:15 +02:00
Oleksii Kriuchykhin
0b74f34de7
Add external IDs to repositories [SCI-5990]
2021-08-30 10:49:14 +02:00
Martin Artnik
1b26a4f65a
Added access token to protocols.io requests [SCI-5968]
2021-08-26 15:26:35 +02:00
Martin Artnik
56576960b0
Rework molecule registration activities [SCI-5999]
2021-08-13 15:15:45 +02:00
Martin Artnik
861be4bb35
Fix issues with BioEddie integration [SCI-5982]
2021-08-11 09:50:00 +02:00
Martin Artnik
8f3f39f7c7
Fixed handling of activity subject parents when matching activity filters [SCI-5973]
2021-08-06 13:43:30 +02:00
Martin Artnik
57d5e6c2a7
Merge branch 'develop' into features/barcodes
2021-08-03 13:36:36 +02:00
artoscinote
f839cb5256
Merge pull request #3464 from biosistemika/features/bioeddie-integration
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Features/bioeddie integration
2021-08-03 13:32:53 +02:00
artoscinote
c41247a5fd
Merge pull request #3439 from artoscinote/ma_SCI_5879
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Implement Save & Register molecule [SCI-5879]
2021-08-03 12:15:46 +02:00
Martin Artnik
a82af505eb
Merge branch 'develop' into features/webhooks
2021-08-02 16:22:52 +02:00
Martin Artnik
0f417f9730
Merge branch 'develop' into features/barcodes
2021-07-29 13:32:17 +02:00
Martin Artnik
67f4e81a3a
Merge branch 'develop' into features/new_permissions
2021-07-28 15:16:47 +02:00
Martin Artnik
e57132dbd0
Added print job queue system, job status endpoint [SCI-5903]
2021-07-27 15:26:18 +02:00
Martin Artnik
53e072f79e
Added error handling to API wrapper [SCI-5939]
2021-07-27 10:36:06 +02:00
Martin Artnik
61919e81b6
Remove FLUICS API client hack [SCI-5939]
2021-07-27 09:41:51 +02:00
Martin Artnik
b32b207f3d
Added FLUICS API client [SCI-5939]
2021-07-23 13:52:28 +02:00
Oleksii Kriuchykhin
c26dcf4b23
Replace empty? with blank? [SCI-5579]
2021-07-23 11:56:28 +02:00
Martin Artnik
662370d2bd
Removed auto-disable, fixed ActiveJob + DelayedJob retry handling [SCI-5800]
2021-07-22 13:43:36 +02:00
Martin Artnik
4bb080c25b
Merge migrations, code fixes [SCI-5800]
2021-07-22 10:51:03 +02:00
Martin Artnik
04b94d504d
Moved activity logging to controller [SCI-5879]
2021-07-22 09:52:04 +02:00
Alex Kriuchykhin
dfa2a7775d
Merge pull request #3422 from okriuchykhin/ok_SCI_5847
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Fix repository cell joining and preloading [SCI-5847]
2021-07-21 13:18:21 +02:00
Alex Kriuchykhin
dbc54278b2
Merge pull request #3211 from okriuchykhin/ok_SCI_5531
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Add basic API client for BMT [SCI-5531]
2021-07-21 13:13:52 +02:00
Oleksii Kriuchykhin
36708b47cf
Fix code styling [SCI-5531]
2021-07-21 13:10:30 +02:00
artoscinote
888131a465
Merge branch 'features/bioeddie-integration' into ma_SCI_5879
2021-07-20 09:48:13 +02:00
aignatov-bio
53456988ba
Add bioEddie activities and user licenses [SCI-5845][SCI-5842] ( #3411 )
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* Add bio eddie licens to users [SCI-5845]
* Add activities for BioEddie [SCI-5842]
2021-07-19 21:33:28 +02:00
artoscinote
5f9c04844f
Added prefixed IDs to repository rows (items) [SCI-5909] ( #3441 )
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* Added prefixed IDs to repository rows (items) [SCI-5909]
* Fix prefixed id queries to work with joins, use subquery in repository search [SCI-5909]
* Fixed accessing repository_row parent code [SCI-5909]
* Better handling of repository_row code display [SCI-5909]
* Fix index warning for id prefixed models issue setting up project [SCI-5909]
2021-07-19 14:23:36 +02:00
Martin Artnik
96a5b97bdb
Implement Save & Register molecule [SCI-5879]
2021-07-15 12:37:04 +02:00
Oleksii Kriuchykhin
549fc8e5a0
Fix repository cell joining and preloading [SCI-5847]
2021-07-07 17:43:51 +02:00
Oleksii Kriuchykhin
d1208bad0b
Merge branch 'develop' into features/new_permissions
2021-07-07 13:44:36 +02:00
Martin Artnik
3662365cac
Small code style tweak SCI-5800
2021-06-30 13:15:08 +02:00
Martin Artnik
618f5cfb53
Code style fixes [SCI-5800]
2021-06-30 13:08:16 +02:00
artoscinote
723b594632
Merge pull request #3398 from artoscinote/ma_SCI_5828
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Expose experiment IDs in interface and reports [SCI-5828]
2021-06-30 12:58:25 +02:00
Martin Artnik
b623e2f40f
Report generation fixes [SCI-5851]
2021-06-29 13:46:45 +02:00
aignatov-bio
786e74e4de
Add BioEddie integration [SCI-5654][SCI-5657][SCI-5658][SCI-5670] ( #3391 )
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* Add backend for bioeddie [SCI-5654]
* Add modal for bioeddie [SCI-5654]
* Add bio eddie editor to steps and results [SCI-5654]
* Fix markup and code styling
2021-06-23 19:48:44 +02:00
Martin Artnik
d67d53b926
Code style fixes
2021-06-22 13:27:03 +02:00
Martin Artnik
66d2e65114
Fixed report docx generation [SCI-5837]
2021-06-21 12:52:12 +02:00
Martin Artnik
879cf5081d
Added experiment code to experiment cards filter [SCI-5829]
2021-06-18 14:38:07 +02:00
Martin Artnik
afc1b2d8b6
Added experiment code to PDF and DOCX [SCI-5830]
2021-06-18 14:14:02 +02:00
Oleksii Kriuchykhin
bb458abec6
Remove old reports code [SCI-5650]
2021-06-18 10:40:00 +02:00
Martin Artnik
c6648111f3
Code style fixes [SCI-5800]
2021-06-17 22:00:13 +02:00
Oleksii Kriuchykhin
1e3197875c
Fix repositories selection in report wizard and deleted repositories handling [SCI-5831]
2021-06-17 16:23:27 +02:00
Martin Artnik
47071e23a1
Added specs for webhooks
2021-06-17 14:54:30 +02:00
Alex Kriuchykhin
4caa5f9ac1
Merge pull request #3394 from okriuchykhin/ok_SCI_5776_v2
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Fix repository snapshots for export all [SCI-5776]
2021-06-17 11:35:16 +02:00
Martin Artnik
4ee50f87d5
Implement webhook service and scheduling jobs [SCI-5801, SCI-5802]
2021-06-17 09:19:04 +02:00
Oleksii Kriuchykhin
85a5cca98a
Fix repository snapshots for export all [SCI-5776]
2021-06-16 16:17:12 +02:00
aignatov-bio
12d8b84cfd
Fix snapshots for deleted inventory [SCI-5826] ( #3393 )
2021-06-16 15:23:34 +02:00
aignatov-bio
7313b5fa16
Add archived and deleted repositories to reports [SCI-5781] ( #3387 )
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* Add archived and deleted repositories to reports [SCI-5781]
* Small markup fix [SCI-5781]
2021-06-16 10:56:08 +02:00
Martin Artnik
6cf9ea5bc0
Implement Activity -> ActivityFilter matching service [SCI-5800]
2021-06-15 16:13:28 +02:00
aignatov-bio
9103fcf356
Add project header to reports [SCI-5798] ( #3380 )
2021-06-14 12:42:18 +02:00
aignatov-bio
0e87c44c4f
Fix empty elements in docx rtf table [SCI-5659] ( #3382 )
2021-06-14 12:41:34 +02:00
zmagoD
25802d7043
adopt move/clone my module logic to work with new user assignments (SCI-5805)
2021-06-12 18:51:55 +02:00
Martin Artnik
c17192730e
Lock repository_row before inserting RepositoryCell in SavePdfToInventoryItem [SCI-5794]
2021-06-09 15:44:38 +02:00
Miha Mencin
46e2adf2e3
Merge pull request #3334 from okriuchykhin/ok_SCI_5730
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Improve filtering for inventories [SCI-5730]
2021-06-09 09:50:56 +02:00
Oleksii Kriuchykhin
16bad9eb9c
Fix export all functionality [SCI-5776]
2021-06-08 14:21:34 +02:00
Miha Mencin
ef77c9d67d
Merge pull request #3363 from okriuchykhin/ok_SCI_5774
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Fix dates formatting in report templates [SCI-5774]
2021-05-31 14:23:19 +02:00
Oleksii Kriuchykhin
92821d7f1e
Fix dates formatting in report templates [SCI-5774]
2021-05-31 11:51:04 +02:00
Alex Kriuchykhin
cdbcbd0409
Merge pull request #3357 from okriuchykhin/ok_SCI_5751
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Fix deletion of old reports [SCI-5751]
2021-05-28 13:59:36 +02:00
Oleksii Kriuchykhin
70f0535dbd
Fix deletion of old reports [SCI-5751]
2021-05-27 16:31:58 +02:00
aignatov-bio
24f4f6cbb2
Fix report experiments sorting [SCI-5762]
2021-05-27 12:44:45 +02:00
Miha Mencin
30a116fc83
Merge pull request #3346 from okriuchykhin/ok_SCI_5735
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Refactor DOCX report generator [SCI-5735]
2021-05-24 11:25:13 +02:00
aignatov-bio
f576af078e
Fix repository selection in report wizard [SCI-5749]
2021-05-24 09:40:50 +02:00
Oleksii Kriuchykhin
64ce35c8da
Refactor DOCX report generator [SCI-5735]
2021-05-21 16:40:38 +02:00
Oleksii Kriuchykhin
29c83ffbb1
Merge branch 'develop' into features/new-reports
2021-05-21 11:04:17 +02:00
Oleksii Kriuchykhin
0ff1277dbf
Improve filtering for inventories [SCI-5730]
2021-05-19 22:48:52 +02:00
zmagoD
c23c01c01c
remove user projects enpoints, fix the role name display
2021-05-16 12:03:16 +02:00
Oleksii Kriuchykhin
c0ef2eef3c
Improve report saving performance and error handling [SCI-5614]
2021-05-06 10:53:40 +02:00
Oleksii Kriuchykhin
1abc0dc1eb
Fix tests [SCI-5636]
2021-05-03 13:03:26 +02:00
Oleksii Kriuchykhin
bca88188de
Limit created report relations depth to tasks [SCI-5665]
2021-04-28 15:33:30 +02:00
aignatov-bio
7c75f170d0
Add repositories settings to report wizard [SCI-5648] ( #3269 )
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* Add repositories settings to report wizard [SCI-5648]
* Move repositories from report settings to content [SCI-5648]
2021-04-28 09:54:00 +02:00
aignatov-bio
d18a54c874
Update create and update action for reports controller [SCI-5641] ( #3260 )
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Update create and update action [SCI-5641]
2021-04-20 13:35:40 +02:00
Oleksii Kriuchykhin
fe8f006f6e
Fix save report PDF to Inventory [SCI-5613]
2021-04-14 16:06:59 +02:00
Oleksii Kriuchykhin
0a9a656313
Add flash message and notification for generated reports [SCI-5552]
2021-04-14 15:45:51 +02:00
miha
56ebc3dc07
[SCI-5635] add a migration to fix broken steps, fix the api so it sets last_modified_by_id, minor step model refactor
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migration fix
remove the conditoin for set_last_modified_by callback
set the last_modified_by_id in before_save callback (in case it is not set yet)
remove trailing spaces
Set last modified in protocl import service
2021-04-12 09:59:00 +02:00
Oleksii Kriuchykhin
f7c865974d
Switch to graphviz gem [SCI-5596]
2021-03-25 17:42:57 +01:00
Oleksii Kriuchykhin
ab9fd65a19
Add basic API client for BMT [SCI-5531]
2021-03-12 10:53:10 +01:00
aignatov-bio
c6e4d6ef94
Fix activities multiple types selected [SCI-5546]
2021-03-10 12:59:02 +01:00