Commit graph

6090 commits

Author SHA1 Message Date
aignatov-bio
4ddcbe5d75 Fix user permission for recent protocols (#1843) 2019-06-19 14:06:02 +02:00
aignatov-bio
9653f16196
Convert image to base64 in PDF reports [SCI-3557] (#1835)
* Convert image to base64 in PDF reports

* Fix typo error
2019-06-19 13:57:04 +02:00
aignatov-bio
81d10c8ce4
Remove recent protocol button on new step (#1841) 2019-06-19 12:49:22 +02:00
Urban Rotnik
3bad945e97
Merge pull request #1848 from urbanrotnik/ur-sci-3541-fixing-wrong-imports
Required fields not imported  [SCI-3541]
2019-06-19 11:24:55 +02:00
Urban Rotnik
bf6041e13d Update sanitization of html descriptions 2019-06-19 11:05:22 +02:00
Urban Rotnik
7e69375016 Drop header column and row when extract tables 2019-06-19 10:47:38 +02:00
Urban Rotnik
805f98374c
Merge pull request #1846 from urbanrotnik/ur-sci-3548-additional-fields
Add Warnings, Before start and Guidelines to protocol description [SCI-3548]
2019-06-19 09:22:26 +02:00
Urban Rotnik
2a579f2240 Add Warnings, Before start and Guidelinese to protocol description 2019-06-19 09:02:42 +02:00
Mojca Lorber
ebcaa4b014 Implement protocols.io error handling for api client and normalizer 2019-06-18 14:01:57 +02:00
Urban Rotnik
c691ad80b5 Add fields to query params for ApiClient 2019-06-17 12:24:16 +02:00
Urban Rotnik
88d96c0938 Use service in controller 2019-06-17 12:24:15 +02:00
Urban Rotnik
7fad5fc594 Add search service and normalizer for list 2019-06-17 12:24:15 +02:00
Jure Grabnar
4f6397b5b9 Add form to external_sources#new action
Closes SCI-3532
2019-06-17 12:24:15 +02:00
Jure Grabnar
c8b8bcffdb Add external_protocols#show action 2019-06-17 12:24:14 +02:00
Jure Grabnar
f7c6f78925 Add external_protocols#index action 2019-06-17 12:24:14 +02:00
Jure Grabnar
2a61075156 Add ExternalProtocols#create action and tests 2019-06-17 12:24:14 +02:00
Jure Grabnar
9baa66c998 Refactor OnlineSources -> ExternalProtocols 2019-06-17 12:24:13 +02:00
Jure Grabnar
eb0d677a36 Refactor pio_protocol -> built_protocol 2019-06-17 12:24:13 +02:00
Jure Grabnar
94e7fe1e6c OnlineSourcesController skeleton and #new action tested 2019-06-17 12:24:13 +02:00
Jure Grabnar
7adef9cc9e Change sort buttons positions
Closes SCI-3534
2019-06-17 12:24:13 +02:00
Jure Grabnar
218cf84775 Hound fixes 2019-06-17 12:24:12 +02:00
Jure Grabnar
d103f8ffec Finish external protocols screen
Closes SCI-3534
2019-06-17 12:24:12 +02:00
Jure Grabnar
0b60da9b4c Add ExternalProtocols skeleton tab 2019-06-17 12:24:12 +02:00
Urban Rotnik
0d43ecdfab Import protocol service after object is built 2019-06-17 12:24:11 +02:00
Jure Grabnar
eb275c4d12 Add tests for BuildProtocolService and fix bugs 2019-06-17 12:24:11 +02:00
Jure Grabnar
362b0cd45d Hound fixes 2019-06-17 12:24:11 +02:00
Jure Grabnar
640f6c1211 Fix tests after BuildProtocolFromClientService refactor
Closes SCI-3544
2019-06-17 12:24:11 +02:00
Jure Grabnar
1e8627c450 Refactor ImportProtocol service to BuildProtocolService
Closes SCI-3544
2019-06-17 12:24:10 +02:00
Urban Rotnik
92c24451d9 Moved normalized_single_protocol.json 2019-06-17 12:24:10 +02:00
Urban Rotnik
a15596a126 Add ImportProtocolService 2019-06-17 12:24:10 +02:00
Urban Rotnik
2bb4f558b7 View rendering simplified, small improvements 2019-06-17 12:24:09 +02:00
Urban Rotnik
807104035c Add StepBuilder, TableBuilder, AssetBuilder for PIO, normalized updated 2019-06-17 12:24:09 +02:00
Urban Rotnik
6a4deb0201 Add ProtocolIntermediateObject 2019-06-17 12:24:09 +02:00
Urban Rotnik
aadf2eecb4 Basic data normalizer for ProtocolIO 2019-06-17 12:24:08 +02:00
Urban Rotnik
ec49388283 Add protocol base normalizer class 2019-06-17 12:24:08 +02:00
Jure Grabnar
c1cee07a63 Extract API client constants to constants.rb 2019-06-17 12:24:08 +02:00
Jure Grabnar
a15b1f6dfa Add logging for ApiClient and fix hound formatting 2019-06-17 12:24:08 +02:00
Jure Grabnar
5685709f48 Implement API client for protocols.io
Closes SCI-3357
2019-06-17 12:24:07 +02:00
aignatov-bio
fb3b7918af
Fix handson table issue (#1827) 2019-06-14 16:21:27 +02:00
aignatov-bio
2dfbdacfa3
Change restore button background (#1829) 2019-06-14 16:21:01 +02:00
aignatov-bio
da8d748c49
Fix small comments bugs (#1832) 2019-06-14 16:20:47 +02:00
aignatov-bio
68937dd192
Fix RTE import for protocol repository (#1833) 2019-06-14 16:20:27 +02:00
aignatov-bio
7a3eedf461
Adding missing avatars to comments (#1838) 2019-06-14 16:20:13 +02:00
Anton Ignatov
f480c0eb8d Adding new activtiies for image editing 2019-06-14 16:15:30 +02:00
aignatov-bio
52a2f5cd0e
Add recent protocols dropdown to task page [SCI-3417] (#1800)
* Add recent protocols dropdown to task page
2019-06-13 15:47:29 +02:00
Oleksii Kriuchykhin
097639e71e Fix view state validation [SCI-3436] 2019-06-13 14:28:46 +02:00
Oleksii Kriuchykhin
109793c7fb Upgrade to Rails 5.2.3 and add ActiveStorage [SCI-3539] 2019-06-13 12:10:44 +02:00
Jure Grabnar
0f359e98d8
Rename default libreoffice to soffice binary (#1834)
Rename default libreoffice to soffice binary
2019-06-13 11:49:52 +02:00
Jure Grabnar
5cb517e021 Rename default libreoffice to soffice binary 2019-06-13 11:32:11 +02:00
Alex Kriuchykhin
599274eb13
Merge pull request #1830 from okriuchykhin/ok_SCI_3528
Make repositories more extendable [SCI-3528]
2019-06-13 09:45:18 +02:00