scinote-eln/scinote-web
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1761 commits 43 branches 185 tags 169 MiB
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373 commits

Author SHA1 Message Date
Oleksii Kriuchykhin
d1e69438de Add config option to enable/disable users registration [SCI-935] 2017-01-30 15:04:02 +01:00
zmagod
e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
Luka Murn
b2d2f56bdd Version bump to 1.7.1 2017-01-26 17:00:54 +01:00
Luka Murn
042a85af45 Bump version to 1.7.0 2017-01-25 18:22:11 +01:00
Mojca Lorber
d669f006b1 fix tables in reports 2017-01-25 15:15:26 +01:00
zmagod
1220466035 fixing hound 2017-01-25 15:00:14 +01:00
zmagod
f04a2f663a renamed organizations in config/ 2017-01-25 12:30:11 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
zmagod
6e7fa21dd3 adds smart annotation in task comments, refactor smart_annotation_parser method, fix the user popover description [fixes SCI-924] 2017-01-24 10:51:12 +01:00
Zmago Devetak
7bd368e002 Merge pull request #431 from ZmagoD/zd_add_code_highlight 
Fixes code highlight and smart annotations experiments bug
 2017-01-20 12:59:21 +01:00
zmagod
9550c6dd35 fixes highlight.js 2017-01-19 17:09:25 +01:00
Mojca Lorber
6653f0d4c1 small fixes 2017-01-19 16:42:14 +01:00
Oleksii Kriuchykhin
890c5e3c3d Add “no results found” message in smart annotation [SCI-886] 2017-01-19 13:42:58 +01:00
Mojca Lorber
dde9854bf1 update protocol import/export and clone 2017-01-18 14:22:19 +01:00
Mojca Lorber
3b92ab9f36 add names to tables from protocol steps in reports 2017-01-18 14:22:19 +01:00
Mojca Lorber
b3c423c582 add table name in protocol step 2017-01-18 14:22:18 +01:00
Luka Murn
cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
okriuchykhin
02bfd19d1c Merge pull request #385 from okriuchykhin/ok_SCI_102 
Fix XSS on activites and throghout the rest of app [SCI-102]
 2017-01-16 11:41:38 +01:00
zmagod
1b2fa78e42 adds user preview to user smart annotation [fixes SCI-832] 2017-01-13 11:34:10 +01:00
Matej Zrimšek
93a8e0bdae Fixes sample deletion when coming from experiment page and having modules attached. [SCI-848] 2017-01-12 14:08:29 +01:00
Oleksii Kriuchykhin
0546716a0b Improve user input sanitization, fix bugs [SCI-102] 2017-01-11 15:50:11 +01:00
zmagod
a4aa933151 refactor smart annotation parser helper 2017-01-11 10:34:14 +01:00
zmagod
fc76a4ae6d Merge branch 'smart-annotations' of https://github.com/biosistemika/scinote-web into zd_SCI_834 2017-01-10 14:22:04 +01:00
zmagod
6efcf49927 working version of dropdown filter 2017-01-10 14:14:21 +01:00
zmagod
53d20df449 added xregexp 2017-01-10 14:14:21 +01:00
zmagod
94262b56ef prepare data for atwho 2017-01-10 14:14:21 +01:00
mz3944
ef431da2db Merge pull request #389 from mz3944/mz-sci-848 
Unable to delete samples [SCI-848]
 2017-01-09 11:57:48 +01:00
okriuchykhin
3c47d17019 Merge pull request #386 from okriuchykhin/ok_SCI_815 
Improve error message when importing CSV files with incorrect character encoding [SCI-815]
 2017-01-09 11:54:28 +01:00
Oleksii Kriuchykhin
aa2b573278 Enable image preview while editing steps and code style improvements [SCI-694] 2017-01-06 15:58:23 +01:00
Matej Zrimšek
5d104981fd Fixed sample deletion on experiments level. Minor refactoring. [SCI-848] 2017-01-06 14:23:20 +01:00
Luka Murn
3cdd375a2d Merge pull request #388 from biosistemika/hotfix-1.6.1 
Hotfix 1.6.1
 2017-01-06 11:23:16 +01:00
Oleksii Kriuchykhin
cba064dfcc Improve error message whan importing CSV files with incorrect character encoding [SCI-815] 2017-01-05 17:00:21 +01:00
Oleksii Kriuchykhin
4fe3030ad4 Freeze WHITELISTED_ATTRIBUTES constatnt [SCI-102] 2017-01-05 16:13:00 +01:00
Oleksii Kriuchykhin
1009347026 Add list of whitelisted attributes [SCI-102] 2017-01-05 15:33:41 +01:00
Luka Murn
ef688feb4e Hotfix 1.6.1 
Set confirmed_at to created_at when using no
email confirmations and users sign up by themselves.
 2017-01-05 15:27:18 +01:00
Oleksii Kriuchykhin
6487bd788a Add additional whitelisted tags [SCI-102] 2017-01-05 14:40:38 +01:00
Luka Murn
b614ce714b Restyle atwho dropdown 2017-01-05 14:06:48 +01:00
Oleksii Kriuchykhin
9c4191a1e0 Initial code commit [SCI-102] 2017-01-05 13:04:19 +01:00
Luka Murn
09ef3b3ad5 Merge pull request #378 from Ducz0r/lm-sci-802-fix 
Add tooltips to samples column dropdown [SCI-802]
 2017-01-04 11:30:04 +01:00
Luka Murn
2c5b27ce81 Change "Update" to "Save" 
Closes SCI-802.
 2017-01-04 11:29:34 +01:00
mlorb
59751ec41e Merge pull request #373 from mlorb/ml_sci_709 
Add Protocol Preview to Protocol repository [SCI-709]
 2017-01-04 11:28:55 +01:00
Luka Murn
3bee9d2e12 Save an (yet unworking) version of user smart annotations 
Used so other devs can start working on smart annotations.
 2017-01-04 10:54:02 +01:00
Luka Murn
cedc6c5074 Merge pull request #382 from Ducz0r/lm-sci-166-fix 
Re-add tags index controller action to render tags [SCI-166]
 2017-01-04 10:48:09 +01:00
Luka Murn
37cd6417c8 Merge pull request #374 from Ducz0r/lm-sci-808-814-fix 
Fix some bugs on sample groups & types page [SCI-808, SCI-814]
 2017-01-04 09:50:26 +01:00
zmagod
a434649f42 Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-01-03 16:35:25 +01:00
Mojca Lorber
c476faca30 fix hound 2017-01-03 11:04:09 +01:00
zmagod
01c086b667 fixes routes.rb indentation 2017-01-03 09:49:18 +01:00
Luka Murn
af9e272b2a Re-add tags index controller action to render tags 
Closes SCI-166.
 2017-01-03 09:39:41 +01:00
Oleksii Kriuchykhin
d898f8993f Add description to Clone actions [SCI-766] 2016-12-29 15:33:49 +01:00
Luka Murn
2304742d87 Add tooltips to samples column dropdown 
Closes SCI-802.
 2016-12-27 08:45:23 +01:00
Luka Murn
3922be2b17 Change String in sample types & groups 
Closes SCI-808.
 2016-12-23 11:48:57 +01:00
Luka Murn
e16c826bb1 Version bump to 1.6.0 2016-12-22 11:43:52 +01:00
Mojca Lorber
40e3240a99 add content to preview modal 2016-12-22 11:43:11 +01:00
Oleksii Kriuchykhin
cbef971d85 Fix timeouts when fetching images from S3 [SCI-694] 2016-12-20 15:36:07 +01:00
Oleksii Kriuchykhin
b537feb8a0 Added large preview [SCI-694] 2016-12-16 17:07:08 +01:00
Oleksii Kriuchykhin
0541253ffa Added modal for images preview [SCI-694] 2016-12-16 15:53:16 +01:00
Zmago Devetak
90a115fff3 Merge pull request #342 from ZmagoD/zd_SCI_758 
Generate png preview images for uploaded TIFF images
 2016-12-16 15:39:07 +01:00
Zmago Devetak
c8631077df Merge pull request #361 from biosistemika/improved-sample-table 
Improved sample table
 2016-12-16 15:37:54 +01:00
zmagod
6d2fb3b02c Merge branch 'improved-sample-table' of https://github.com/biosistemika/scinote-web into zd_SCI_790 2016-12-14 17:05:00 +01:00
zmagod
2426539715 fixes long names in columns dropdown [fixes SCI-784] 2016-12-13 14:54:37 +01:00
Mojca Lorber
2cfcba0ceb add protocol preview modal 2016-12-13 10:39:18 +01:00
Zmago Devetak
d54007f69c Merge pull request #337 from ZmagoD/zd_SCI_740 
limits max size of all uploaded files at the one time
 2016-12-13 09:04:14 +01:00
zmagod
8dd8a7e7cd Merge branch 'improved-sample-table' of https://github.com/biosistemika/scinote-web into zd_improved_samples_table_SCI_774_775_778_777 2016-12-12 15:52:25 +01:00
zmagod
5176f8b459 clean unneeded code [fixes SCI-778] refactor js 2016-12-12 15:40:13 +01:00
zmagod
d9025a9601 changes create/edit mode buttons [fixes SCI-777] 2016-12-12 14:42:06 +01:00
Luka Murn
d30a9780f4 Merge branch 'lm-sci-711-fix' of https://github.com/Ducz0r/scinote-web into Ducz0r-lm-sci-711-fix 
Conflicts:
	app/assets/javascripts/samples/sample_datatable.js
 2016-12-12 09:57:37 +01:00
Luka Murn
1a8b141b95 Add delete custom field functionality 2016-12-09 13:49:19 +01:00
Luka Murn
754c90b612 Edit functionality now works 2016-12-09 13:18:59 +01:00
Matej Zrimšek
aea679ec11 Added links for creating new sample type and group when creating new sample. [fixes SCI-701] 2016-12-09 11:39:12 +01:00
Mojca Lorber
0e3526c9ad Merge branch 'mlorb-ml-sci-696' into improved-sample-table 
Conflicts:
	app/assets/javascripts/samples/sample_datatable.js
 2016-12-08 15:44:50 +01:00
zmagod
40fdfef67f setup delayed_paperclip gem 2016-12-08 15:24:14 +01:00
zmagod
ac52e643be cleanup direct upload 2016-12-08 11:26:13 +01:00
Mojca Lorber
195055f9cf change SAMPLES_TABLE_DEFAULT_STATE 2016-12-07 14:51:34 +01:00
Mojca Lorber
39b6fa66fe add SamplesTable for new users 2016-12-07 14:14:32 +01:00
zmagod
9f1e436623 limits max size of all uploaded files at the one time [fixes SCI-740] 2016-12-07 09:02:04 +01:00
okriuchykhin
cb2abfa7a9 Merge pull request #325 from okriuchykhin/ok_SCI_712 
Added form for adding new columns to samples table into dropdown [SCI-712]
 2016-12-06 15:00:01 +01:00
zmagod
8ca7151df4 added constant to load_from_file_size_error local 2016-12-06 13:52:07 +01:00
Oleksii Kriuchykhin
f6dd64772a Add columns to samples table without page reload [SCI-712] 2016-12-06 13:22:26 +01:00
Oleksii Kriuchykhin
22dabd2177 Added form for adding new columns to samples table into dropdown [SCI-712] 2016-12-06 13:17:05 +01:00
Oleksii Kriuchykhin
94866e8994 Initial code commit for samples columns dropdown [SCI-712] 2016-12-06 13:16:05 +01:00
Mojca Lorber
849f78b4df implement reordering of columns in the samples table and change from local to database storage 2016-12-05 11:34:36 +01:00
zmagod
ef2471d3f7 fixes inport eln error message and spinner [fixes SCI-752] 2016-12-05 10:44:58 +01:00
zmagod
83aae59eed adds sample groups index page 2016-12-02 09:33:09 +01:00
Luka Murn
7309da9d92 Version bump to 1.5.1 2016-12-01 15:54:08 +01:00
Matej Zrimšek
3bdaa4bcef Some token authentication refactoring and error handilng fixes. [closes SCI-689] 2016-12-01 15:38:56 +01:00
Matej Zrimšek
46465060d0 Added automatic sign in with token authentication, needed when signing in from different webpage. [closes SCI-689] 2016-11-30 16:56:56 +01:00
Nejc Bernot
495c648f41 Added subdomain based routing constraints 
Non-wopi routes will only work with the subdomain set by the env variable USER_SUBDOMAIN (if it is set). Likewise, wopi routes will only work with the WOPI_SUBDOMAIN if it is set, but they also require the WOPI_ENABLED to be true.
 2016-11-30 16:43:33 +01:00
Luka Murn
f138a39508 Merge pull request #324 from Ducz0r/lm-sci-718-fix 
Fix intro tutorial string
 2016-11-30 09:50:40 +01:00
zmagod
1859df0319 fix hound 2016-11-30 09:44:49 +01:00
Luka Murn
76ec77fce4 Merge pull request #329 from biosistemika/simplify-signup 
Merge simplify-signup into master
 2016-11-30 09:41:20 +01:00
zmagod
12848f15fa adds sample_type index view with all crud actions 2016-11-29 17:15:54 +01:00
zmagod
5c0b2d7b24 init sample_types page 2016-11-29 08:57:12 +01:00
Luka Murn
48a1c98f16 Fix intro tutorial string 
Closes SCI-718.
 2016-11-28 17:28:04 +01:00
Zmago Devetak
1e870a6e7c Merge pull request #320 from ZmagoD/zd_SCI_698 
adds new samples columns dropdown [fixes SCI-698]
 2016-11-28 16:30:16 +01:00
okriuchykhin
f9c8223fe5 Merge pull request #321 from okriuchykhin/ok_SCI_736 
Improve regexp for image whitelisting [SCI-736]
 2016-11-28 15:46:54 +01:00
Oleksii Kriuchykhin
d8f8e01a46 Code cleanup, added new image types to whitelist [SCI-736] 2016-11-28 11:13:20 +01:00
okriuchykhin
31f6379866 Merge pull request #318 from okriuchykhin/ok_SCI_736 
Add whitelisting of supported image types [SCI-736]
 2016-11-28 09:32:49 +01:00
Luka Murn
d0b86de3a4 Use Rails's email regex 2016-11-25 17:37:27 +01:00
zmagod
9d91d2ce28 adds new samples columns dropdown [fixes SCI-698] 2016-11-25 17:29:30 +01:00
Oleksii Kriuchykhin
74f6455a8f Add whitelisting of supported image types [SCI-736] 2016-11-25 16:12:43 +01:00