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8947 commits 44 branches 180 tags 166 MiB
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288 commits

Author SHA1 Message Date
Anton Ignatov
33497d11a3 Merge branch 'activestorage_migration' 2019-10-01 10:36:05 +02:00
Anton Ignatov
5a1efb84c6 Fix error on archived experiment page 2019-09-18 15:23:45 +02:00
Mojca Lorber
47ccf38662 Redesign of sorting button for projects/experiments cards 2019-09-16 14:43:12 +02:00
Oleksii Kriuchykhin
3509543e7b Merge branch 'master' into ok_SCI_3881 2019-09-16 11:56:49 +02:00
Luka Murn
2db39c049e Remove projects archive page 2019-08-21 13:10:54 +02:00
Anton Ignatov
a4b2825258 Fix tests for active storage 2019-07-26 15:58:51 +02:00
Luka Murn
83bb89fdf5 Cherry-picked commit from ZZ (and LM)'s various changes 2019-07-26 10:13:14 +02:00
Oleksii Kriuchykhin
c0c8e0e1a3 Refactor Experiment workflow images [SCI-3539] 2019-07-04 09:33:12 +02:00
aignatov-bio
d207cf5dce
Refactored comments over SciNote [SCI-3505] (#1808) 
* Preparing helpers for comments

* Refactored comments over scinote

* Update events
 2019-06-04 14:40:21 +02:00
Oleksii Kriuchykhin
1128fedc51 Refactor title inline editing permission checking [SCI-3471] 2019-05-20 13:13:31 +02:00
Oleksii Kriuchykhin
2ef926e795 Add permission checking to inline editor fields [SCI-3468] 2019-05-15 17:47:09 +02:00
aignatov-bio
60296419e8
Update project card due date dropdown (#1716) 2019-04-30 13:30:09 +02:00
Anton Ignatov
aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
aignatov-bio
8ba0555922
Add check for tasks complete in project notifications (#1657) 2019-04-12 09:17:34 +02:00
aignatov-bio
e93b0c3109
Adding preload filters for global activities [SCI-3254] (#1619) 
* Adding preload filter for global activities

* Adding link to task activities
 2019-04-02 11:14:36 +02:00
aignatov-bio
b1df8c9aa7
Adding inline editing to experiment title, project title and task title [SCI-3059] (#1524) 
* Adding inline editing to experiment title, project title and task title
 2019-03-06 09:17:34 +01:00
Mojca Lorber
089ec64398 fix experiment card look on Matejs request 2019-01-28 16:59:40 +01:00
mlorb
7fdef4d3ec Change experiment cards look and feel 2019-01-18 15:57:44 +01:00
Oleksii Kriuchykhin
1861f86b2c Improve export all modal messages in case of unlimited exports [SCI-2965] 2019-01-17 17:27:32 +01:00
Oleksii Kriuchykhin
311189a2e9 Replace reports materialized view with normal queries and re-enable fragment caching [SCI-2894] 2018-12-13 11:18:09 +01:00
Alex Kriuchykhin
37db41e18e
Merge pull request #1405 from okriuchykhin/ok_SCI_2881 
Refresh sidebar when project is archived/restored [SCI-2881]
 2018-12-10 14:11:34 +01:00
Alex Kriuchykhin
51ba74cbab
Merge pull request #1403 from okriuchykhin/ok_SCI_2757 
Enable caching for navigation sidebar [SCI-2757]
 2018-12-10 14:11:05 +01:00
Oleksii Kriuchykhin
e43b366cdb Disable fragment caching 2018-11-29 18:07:31 +01:00
Oleksii Kriuchykhin
2c96f08b98 Refresh sidebar when project is archived/restored [SCI-2881] 2018-11-29 14:20:20 +01:00
Oleksii Kriuchykhin
60a19734b2 Enable caching for navigation sidebar [SCI-2757] 2018-11-29 11:28:36 +01:00
mz3944
4d460d14ea
Merge pull request #1378 from mz3944/mz-SCI-2861 
All users in smart annotation have removed in brackets [SCI-2861]
 2018-11-20 21:22:23 +01:00
mlorb
3b96a60938
Merge pull request #1374 from mlorb/ml-sci-2842 
Update the Export all confirmation modal and export interaction [SCI-2842]
 2018-11-19 11:36:08 +01:00
Alex Kriuchykhin
d524a1d508
Merge pull request #1364 from okriuchykhin/ok_SCI_2778 
Add time format selection to settings [SCI-2778]
 2018-11-19 10:17:09 +01:00
Matej Zrimšek
c144d599fc Fix user smart annotation showing as if the user is removed from team [SCI-2861] 2018-11-19 08:02:25 +01:00
mlorb
4b540958bd change close/cancel button and refactor export_project_modal endpoint 2018-11-16 13:37:32 +01:00
mlorb
6453ab6fb1 update the Export all confirmation modal and export interaction 2018-11-15 15:53:58 +01:00
Oleksii Kriuchykhin
3fd687161f Remove unused variables from activities controller [SCI-2778] 2018-11-14 13:17:38 +01:00
Oleksii Kriuchykhin
537de596a7 Merge latest master [SCI-2778] 2018-11-14 13:05:57 +01:00
Luka Murn
98a39ecd72 Fix visual bug (everything bold) on projects index page 
Bug was introduced in projects absent section, there was no
closing </strong> tag.
 2018-11-14 11:33:27 +01:00
Luka Murn
84df2c81f9 Merge branch 'features/export-all' 
Conflicts:
	app/controllers/experiments_controller.rb
	app/controllers/my_modules_controller.rb
	db/schema.rb
 2018-11-13 09:14:02 +01:00
Oleksii Kriuchykhin
98d1ea8542 Improve Export All button behaviour [SCI-2839] 2018-11-12 15:51:03 +01:00
Oleksii Kriuchykhin
e89d60785f Fix dates on activities and experiments [SCI-2778] 2018-11-12 10:26:48 +01:00
mlorb
4d156080ac fix empty projects page bug and projects tree bug 2018-11-07 13:45:46 +01:00
mlorb
63e039e235 fix bug with new project button not working 2018-11-06 11:38:31 +01:00
Alex Kriuchykhin
c1d853f7bd
Merge pull request #1344 from okriuchykhin/ok_SCI_2783 
Fix issue with project dropdown caching [SCI-2783]
 2018-10-29 10:56:02 +01:00
Oleksii Kriuchykhin
641d74829a Fix issue with project dropdown caching [SCI-2783] 2018-10-24 17:52:40 +02:00
Matej Zrimšek
c89488e105 Fix displaying projects when all are archived [SCI-2787] 2018-10-24 03:34:13 +02:00
Matej Zrimšek
43fdab561f Fix project archiving and restoring edge case [SCI-2787] 2018-10-24 01:37:57 +02:00
Oleksii Kriuchykhin
02f536cd08 Merge latest features/export-all [SCI-2733] 2018-10-16 17:20:19 +02:00
Jure Grabnar
ed16e8d479 Fix reviewers errors 2018-10-16 11:00:38 +02:00
Jure Grabnar
26df1e5a98 Add export project modal 
Closes [SCI-2645]
 2018-10-16 11:00:38 +02:00
Oleksii Kriuchykhin
af02f29fb5 Implement user state saving for projects overview [SCI-2733] 2018-10-10 16:15:31 +02:00
Oleksii Kriuchykhin
7a591273a3 Remove unused variables [SCI-2731] 2018-10-08 13:45:26 +02:00
Oleksii Kriuchykhin
ba58eec2e2 Merge latest features/export-all [SCI-2731] 2018-10-03 11:04:44 +02:00
Oleksii Kriuchykhin
7d995189bd Fixies after code review [SCI-2730] 2018-10-02 14:24:44 +02:00
Oleksii Kriuchykhin
492a5de19e Add Projects view - list/table view [SCI-2731] 2018-10-01 15:39:42 +02:00
Oleksii Kriuchykhin
2508394924 Refactor Projects view - cards view [SCI-2730] 2018-09-27 10:43:44 +02:00
Oleksii Kriuchykhin
f8388d4bcd Merge branch 'ok_SCI_2729' into ok_SCI_2730 2018-09-25 10:26:46 +02:00
Oleksii Kriuchykhin
80e73bfb97 Implement Projects view - navigation bar (tabs) [SCI-2729] 2018-09-24 16:25:04 +02:00
Oleksii Kriuchykhin
84428b37c2 Add project view JSON endpoints [SCI-2728] 2018-09-21 10:39:20 +02:00
Zanz2
22a565a684 Made fixes according to review 2018-09-14 13:07:09 +02:00
Zanz2
2d1d4c78bc
Merge branch 'master' into zz_in_app_tooltips_help_sci2662 2018-08-21 11:27:01 +02:00
Zanz2
8c492e1491 started implementing tooltips, and upgraded behaviour, also trying to fix some bugs with data content attribute 2018-08-17 16:03:49 +02:00
Oleksii Kriuchykhin
b2bd1cb849 Upgrade to Turbolinks 5 [SCI-2253] 2018-07-27 17:26:46 +02:00
Oleksii Kriuchykhin
6669beaf0e Change icons throughout the rest of application [SCI-2445] 2018-07-27 15:27:08 +02:00
Luka Murn
9a4fdd166e Merge branch 'lm-sci-2431-fix' of https://github.com/Ducz0r/scinote-web into Ducz0r-lm-sci-2431-fix 
Conflicts:
	app/views/projects/index.html.erb
 2018-06-12 17:44:42 +02:00
Zmago Devetak
6ba5c587f7
Merge pull request #1189 from ZmagoD/zd_SCI_2211 
add data-hook, refactor add user to project modal to support addons
 2018-06-08 15:23:26 +02:00
zmagod
43a60b632a adds datahook to experiment card [fixes SCI-2373] 2018-06-06 17:28:04 +02:00
Luka Murn
c07fa5adc2 Update blank page for projects 2018-06-06 17:23:22 +02:00
zmagod
9b9143f145 add hook to tab pane 2018-06-01 16:46:27 +02:00
zmagod
84170f6de0 add data-hook, refactor add user to project modal to support addons 2018-06-01 16:13:22 +02:00
Oleksii Kriuchykhin
58d8414f92 Code fixes for sidebar [SCI-2478] 2018-06-01 15:05:12 +02:00
Oleksii Kriuchykhin
2ddc0fb561 Improve sidebar rendering performance [SCI-2478] 2018-06-01 13:49:02 +02:00
mlorb
f791234ec7 changes on Zmago's request 2018-05-28 11:36:37 +02:00
mlorb
f02363dfce fix error if user is not assigned to any teams 2018-05-25 17:14:22 +02:00
mlorb
c4ecfc4d38 Change icons throughout sciNote - navigation, project, task cards 2018-05-22 16:55:58 +02:00
mlorb
dfe65ccaed UI/UX restyle - fixes throughout application - part 2 2018-05-14 18:33:57 +02:00
mlorb
ed27a7a62a some extra restyling/unifying off app 2018-05-11 18:02:17 +02:00
mlorb
7df40e56c7 UI/UX restyle - fixes throughout application part one 2018-05-08 16:33:42 +02:00
mlorb
d2c0ae241e
Merge pull request #1121 from mlorb/ml-sci-2244 
Update buttons positions and wording throughout app [SCI-2244]
 2018-05-03 11:05:15 +02:00
zmagod
e9642cadad Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2304 2018-04-26 14:26:30 +02:00
mlorb
88d5ba369d
Merge branch 'ux-release-1' into ml-sci-2244 2018-04-26 14:07:03 +02:00
Luka Murn
cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
mlorb
9e11f3b220 update buttons positions and wording throughout app 2018-04-25 13:57:12 +02:00
zmagod
503ad1ba20 removes samples from views [fixes SCI-2304] 2018-04-24 08:26:55 +02:00
mlorb
600ec99c82 fix project navigation to work with archived pages and correct current team 2018-04-17 13:52:43 +02:00
Oleksii Kriuchykhin
f656ad1561 Fix fa icons [SCI-2217] 2018-03-30 17:03:44 +02:00
mlorb
bc06542ed7 refactor project navigation 2018-03-22 11:41:33 +01:00
zmagod
3131ed0948 adds permission check to archived project actions dropdown [fixes SCI-2194] 2018-03-16 17:30:49 +01:00
Oleksii Kriuchykhin
ca66858063 Fix edit project's users modal [SCI-2130] 2018-03-06 15:49:30 +01:00
Matej Zrimšek
b8b9707c06 Fixed protocol and archive permission calls, fixed result permissions; module group managing is now also allowed on newly created groups; other permission call fixes and some refactoring. 2018-02-19 14:51:14 +01:00
Matej Zrimšek
6ba226d514 Added missing '?' to the canaid permission calls that were missing it. 2018-02-16 11:12:30 +01:00
Matej Zrimšek
5bda53eebf Overall refactoring of all canaid permissions and code related to their calls. 2018-02-16 10:54:06 +01:00
Matej Zrimšek
854333b0e6 Grouped permissions for experiment with canaid gem (WIP). 2018-02-14 14:19:00 +01:00
Matej Zrimšek
d058c371d4 Readded project archive permission. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
900446557b Fixed mistyped permission checker. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
93536afcd5 Renamed permission 'update_project' to 'manage_project'. Some permissions fixes; added them in some places where they were missing. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
e5799ee6dc Some permission fixes. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
d423700e84 Used permissions where they were missing. 2018-02-14 13:16:32 +01:00
Matej Zrimšek
321ddc2916 Grouped existing project permissions and used 'canaid' gem. 2018-02-14 13:09:45 +01:00
zmagod
f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
Oleksii Kriuchykhin
917c2cf28e Fix experiment workflow image update indicator [SCI-1872] 2017-12-22 13:12:52 +01:00
Luka Murn
9f60ece25f Merge branch 'master' into rails-5.1 
Conflicts:
	app/models/repository.rb
	app/models/repository_row.rb
	app/views/projects/index.html.erb
	app/views/shared/_secondary_navigation.html.erb
 2017-07-06 15:12:15 +02:00
Mojca Lorber
a3514bdaf0 fix restore action from archives pages 2017-06-29 16:14:25 +02:00
Mojca Lorber
d03be76f35 add tooltips to archive buttons 2017-06-27 14:48:45 +02:00
Oleksii Kriuchykhin
a5926726ce Add notifications counter badge to project card [SCI-1253] 2017-05-10 17:28:37 +02:00
Oleksii Kriuchykhin
344b9c290a Add counters for users and comments on canvas [SCI-152] 2017-05-08 17:32:55 +02:00
Matej Zrimšek
a5cffd06f3 Removed all tutorial data from ERB, so that all tutorial code is in JS. [needed for fixing SCI-719] 2017-04-25 16:03:50 +02:00
Mojca Lorber
ac0988ef32 add data-hooks for remove manage teams button 2017-02-21 15:39:08 +01:00
Mojca Lorber
0fd41e8a6d remove changes on user has no teams view 2017-02-21 15:12:58 +01:00
Mojca Lorber
90864a45a0 fix user has no teams view 2017-02-21 13:08:06 +01:00
Oleksii Kriuchykhin
c119b7c014 Make sciNote work for users without any teams [SCI_934] 2017-02-01 14:16:26 +01:00
zmagod
e59b2e039a Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_939 2017-01-27 11:15:31 +01:00
Oleksii Kriuchykhin
310d8c1920 Refactor smart annotation/auto_link/simple_format rendering [SCI-940] 2017-01-25 17:18:19 +01:00
zmagod
afd8328e9c rename ortanizations -> teams 2017-01-25 14:22:06 +01:00
zmagod
72e13beee3 renamed organizations in views 2017-01-25 12:01:23 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
okriuchykhin
02bfd19d1c Merge pull request #385 from okriuchykhin/ok_SCI_102 
Fix XSS on activites and throghout the rest of app [SCI-102]
 2017-01-16 11:41:38 +01:00
zmagod
1b2fa78e42 adds user preview to user smart annotation [fixes SCI-832] 2017-01-13 11:34:10 +01:00
Oleksii Kriuchykhin
75031e17b9 Remove double sanitization from views [SCI-102] 2017-01-12 16:54:15 +01:00
Oleksii Kriuchykhin
0350f2f792 Add html escaping to name filelds in the views [SCI-102] 2017-01-12 11:03:14 +01:00
Oleksii Kriuchykhin
d05c16b0ba Added auto_link wrapper with custom sanitization [SCI-102] 2017-01-11 17:02:17 +01:00
Oleksii Kriuchykhin
0546716a0b Improve user input sanitization, fix bugs [SCI-102] 2017-01-11 15:50:11 +01:00
zmagod
a4aa933151 refactor smart annotation parser helper 2017-01-11 10:34:14 +01:00
zmagod
89e8946a47 expand smart annotation 2017-01-10 14:14:21 +01:00
Matej Zrimšek
4b0f47675a Fixes experiment button not being clicable in project overview page. [SCI-849] 2017-01-05 14:42:52 +01:00
Oleksii Kriuchykhin
4d3e002c81 Add sorting to Project's experiments overview [SCI-361] 2016-12-23 15:40:01 +01:00
zmagod
fafecce264 adds autolink to comments, tast desc., step desc., experiment desc., samples table 'only custom fields', checklists [fixes SCI-643] 2016-11-23 14:18:50 +01:00
Matej Zrimšek
f13cc5be0e Added additional tutorial step for showing protocol link. Tutorial steps 1-3 are now completelly handled in JS and not in HTML (preferred way). 2016-11-17 18:03:49 +01:00
Zmago Devetak
4f5b7ad8ad Merge pull request #228 from ZmagoD/zd_SCI_585 
Removes archived projects from index page [fixes SCI-585]
 2016-10-21 11:33:01 +02:00
zmagod
db806f3c10 hide private projects 2016-10-21 09:06:19 +02:00
zmagod
4c086a6fc1 removes archived projects from index page [fixes SCI-585] 2016-10-20 13:13:44 +02:00
zmagod
8aaf58f75f removes org selector form project archive [fixes SCI-587] 2016-10-20 12:50:55 +02:00
zmagod
54a3237994 displays org name on the project index page if no project 2016-10-17 15:21:19 +02:00
zmagod
a116feac9c fixed typos and added truncation to org name 2016-10-17 15:21:19 +02:00
zmagod
1614cbc2b2 fixes repeat tutorial button and localization typos 2016-10-17 15:16:22 +02:00
zmagod
fa36488397 fixed new project form 2016-10-17 15:10:26 +02:00
zmagod
d7f514db09 fixes search 2016-10-17 15:10:26 +02:00
Matej Zrimšek
a6a2a237aa Removed unneeded ERB tags, which caused error. Minor refactoring. 2016-10-17 11:57:47 +02:00
Matej Zrimšek
ece89da391 Removed ruby constants duplicates in JS, because of caching problems. 2016-10-17 11:57:47 +02:00
Matej Zrimšek
0780bd2416 Ruby constants are now automatically available in JS. Refactoring was needed. 2016-10-17 11:57:37 +02:00
Matej Zrimšek
a3dfb59558 Added remaining constants. 2016-10-17 11:30:05 +02:00
zmagod
42a30576e3 removed introductory popup [fixes SCI-534] 2016-10-11 08:33:50 +02:00
Luka Murn
f1b74f1906 Fix image names in introductory popup 
This will make sure browsers don't display old, cached images to clients.
 2016-09-29 13:44:38 +02:00
zmagod
2a86aaf7e4 changed popout content [fixes SCI-520] 2016-09-28 15:12:30 +02:00
okriuchykhin
b5c861583d Merge pull request #157 from okriuchykhin/ok_SCI_430 
Fixes issue with unneeded sort icon [fixes SCI-430]
 2016-09-22 16:39:26 +02:00
Matej Zrimšek
234918a76d Word wrapping and truncating added to whole application [fixes SCI-458]. Fixed some bugs which were related to long/too long text and validations. Modified parts of application to accomodate for longer text limits. 2016-09-21 19:48:18 +02:00
Oleksii Kriuchykhin
411ee4ee77 Fixes issue with unneeded sort icon [fixes SCI-430] 2016-09-20 11:30:11 +02:00
Luka Murn
0c1759c15a Merge pull request #135 from Ducz0r/lm-sci-397 
Resize archived experiment panels
 2016-09-07 11:14:53 +02:00
Luka Murn
bda5120548 Resize archived experiment panels 
Closes SCI-397.
 2016-09-06 10:55:05 +02:00
Mojca Lorber
47983812e7 minimize buttons on mobile phone 2016-09-06 10:10:49 +02:00
zmagod
eb39eedfdf [fixes SCI-398] again 2016-08-31 08:46:51 +02:00
zmagod
2ac20d1af1 adds new image + new panel title [fixes SCI-336] 2016-08-29 09:28:29 +02:00
Luka Murn
a0311970f8 Add missing commits for showing image and not able to preview 2016-08-26 16:49:32 +02:00
zmagod
d886d05ccb Merge branch 'zd_SCI_338' 2016-08-26 16:32:49 +02:00