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16826 commits 31 branches 181 tags 167 MiB
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250 commits

Author SHA1 Message Date
ajugo
90db2bace9
API endpoint to generate with ELN data for Validaide [SCI-6663][SCI-6798] (#4012) 
* Manuscript JSON data SCI-6663

* Clean code for generate manuscript data [SCI-6663]

* Include project data into json [SCI-6663]

* Fix hound [SCI-6663]

* Fix hound [SCI-6663]

* Remove manuscript naming [SCI-6663]

* Add local storage assets capabilites [SCI-6663]

* Rename project [SCI-6663]

* Enable multple projects and clean input [SCI-6798]

* Fix hound [SCI-6798]
 2022-05-19 09:08:05 +02:00
Oleksii Kriuchykhin
03ec4cb319 Setup user assignments relations for team, inventory and protocol [SCI-6818] 2022-05-17 14:32:14 +02:00
artoscinote
e3cbf5903a
Move list-type column includes to param, unify naming [SCI-6738] (#4036) 
* Add default includes for inventory columns with lists [SCI-6738]

* Move list-type column includes to param, unify naming [SCI-6738]
 2022-04-20 11:07:15 +02:00
ajugo
54474b2bba
API GET repository stock column output fix [SCI-6550] (#4030) 
* Add include stock unit items to Stock column get [SCI-6550]

* Fix stock column test [SCI-6550]

* Fix hound [SCI-6550]
 2022-04-19 16:05:17 +02:00
ajugo
a9fc4c3c44
Adding/changing stock consumption [SCI-6708] (#4005) 
* Adding/changing stock consumption [SCI-6708]

* Fix hound [SCI-6708]
 2022-04-11 10:47:24 +02:00
ajugo
0a5e93a018
API: add endpoint for creating stock column [SCI-6550] (#3956) 
* Add test for repositoty stock column api [SCI-6550]

* Create and update stock column [SCI-6550]

* Change stock unit [SCI-6550]

* Fix hound [SCI-6550]

* Fix on delete [SCI-6550]

* Fix houd [SCI-6550]
 2022-04-08 14:09:00 +02:00
artoscinote
229a27750f
Implement stock consumption via the API [SCI-6642] (#3964) 
* Implement stock consumption via the API [SCI-6642]

* Remove unnecessary attribute from InventoryItemSerializer [SCI-6642]

* Amend permission check, add nested transaction support to consume_stock method [SCI-6642]
 2022-03-30 14:33:26 +02:00
aignatov-bio
7f7bf0533a
Fix tests [SCI-6486] (#3913) 
* Fix tests [SCI-6486]

* Fix rspec tests [SCI-6486]

Co-authored-by: Anton <anton@scinote.net>
 2022-03-09 14:12:16 +01:00
Alex Kriuchykhin
32d005f480
Fix step deletion for API [SCI-6561] (#3914) 2022-03-03 10:00:44 +01:00
Alex Kriuchykhin
bd47893947
Add inventory archiving to the API [SCI-5584] (#3885) 2022-02-28 10:33:43 +01:00
Alex Kriuchykhin
6b51b8a35c
Fix handling of date values in repositories [SCI-6551] (#3877) 2022-02-21 12:08:35 +01:00
Oleksii Kriuchykhin
200c282683 Add handling of archiving/restoring inventory items to API [SCI-5584] 2022-01-04 21:05:59 +01:00
Oleksii Kriuchykhin
153d1309b7 Improve performance of repository cells index in the API [SCI-6348] 2021-12-10 14:28:05 +01:00
artoscinote
78ab094bf2
Implement public user grouping, deletion and updates to manually assigned [SCI-6228] (#3701) 
* Implement public user grouping, deletion and updates to manually assigned [SCI-6228]

* PR fixes [SCI-6228]

* Permission check improvement [SCI-6228]
 2021-12-01 16:23:24 +01:00
artoscinote
774ffa60d0
Fix creating new users on projects for team admins [SCI-6273] (#3685) 2021-11-19 13:58:54 +01:00
artoscinote
2d6521db42
Fix delete connection in API [SCI-6087] (#3684) 2021-11-19 13:24:29 +01:00
artoscinote
ee8cb033fa
Fix keys in connection serializer, fix destroy method [SCI-6087] (#3677) 2021-11-18 16:10:07 +01:00
Alex Kriuchykhin
ebfd2f7924
Merge pull request #3682 from okriuchykhin/ok_SCI_6088 
Add API endpoint for Cloning Experiments [SCI-6088]
 2021-11-18 15:26:19 +01:00
Alex Kriuchykhin
2104bc489a
Merge pull request #3678 from okriuchykhin/ok_SCI_6275 
Fix permissions check for steps completion in the API [SCI-6275]
 2021-11-18 14:11:03 +01:00
Oleksii Kriuchykhin
b35c283cc5 Fix permissions check for steps completion in the API [SCI-6275] 2021-11-17 21:25:31 +01:00
artoscinote
6b6a49428c
Add additional info to API project_user_assignments type error [SCI-6273] (#3674) 
* Add additional info to API project_user_assignments type error [SCI-6273]

* Generalize user_assignments api controllers [SCI-6237]
 2021-11-17 16:28:02 +01:00
artoscinote
2e84418304
Add create/destroy endpoints to connections API, add tests [SCI-6087] (#3563) 2021-11-17 12:11:22 +01:00
Oleksii Kriuchykhin
2e92500a73 Fix seeds to work with new UserRoles, fix Templates creation job [SCI-6270] 2021-11-15 21:36:06 +01:00
artoscinote
22623c821d
Fixed creating public projects on API, added missing translations [SCI-6167] (#3666) 2021-11-15 15:36:38 +01:00
Oleksii Kriuchykhin
a99599efea Merge branch 'features/new_permissions' into develop 2021-10-29 15:16:30 +02:00
artoscinote
6f2d883706
Added permissions specs for API, minor changes to permissions [SCI-6152] (#3609) 2021-10-28 14:48:28 +02:00
Oleksii Kriuchykhin
2fb71aa312 Add API endpoint for Cloning Experiments [SCI-6088] 2021-10-28 12:28:46 +02:00
artoscinote
f68d724202
Rework experiment permissions [SCI-6054] (#3538) 
* Rework experiment permissions [SCI-6054]
 2021-09-30 11:32:11 +02:00
Martin Artnik
e8f57e9e99 Reworked MyModule permissions [SCI-6056] 2021-09-14 11:08:35 +02:00
Oleksii Kriuchykhin
e8e1ee3011 Prevent creation of duplicated repository cells [SCI-6036] 2021-09-09 14:24:35 +02:00
Martin Artnik
975a8910a8 Updated project permission helpers [SCI-6041] 2021-09-07 11:27:52 +02:00
Martin Artnik
7e6ca3be8a Merge branch 'develop' into features/new_permissions 2021-09-06 10:33:32 +02:00
Oleksii Kriuchykhin
33d37d048e Add timestamps to API serializers, allow inclusion of comments [SCI-5983] 2021-08-18 10:00:01 +02:00
Martin Artnik
67f4e81a3a Merge branch 'develop' into features/new_permissions 2021-07-28 15:16:47 +02:00
Oleksii Kriuchykhin
549fc8e5a0 Fix repository cell joining and preloading [SCI-5847] 2021-07-07 17:43:51 +02:00
zmagoD
784e43e328 create user_assignments for all child objects when the user is attached to the project 2021-06-06 09:54:47 +02:00
zmagoD
3d79dd32ad update endpoint type 2021-05-31 21:48:18 +02:00
zmagoD
debff7bc85 fix code style 2021-05-29 19:25:46 +02:00
zmagoD
28cb7ee81d add user roles enpoint and update scenarios 2021-05-29 15:28:10 +02:00
zmagoD
7e6789200a fix new API endpoints and add test cases 2021-05-23 17:31:02 +02:00
zmagoD
300c1521fd add new API endpoints and fix/update ExperimentMember and MyModuleMember modules 2021-05-22 18:36:30 +02:00
miha
56ebc3dc07 [SCI-5635] add a migration to fix broken steps, fix the api so it sets last_modified_by_id, minor step model refactor 
migration fix

remove the conditoin for set_last_modified_by callback

set the last_modified_by_id in before_save callback (in case it is not set yet)

remove trailing spaces

Set last modified in protocl import service
 2021-04-12 09:59:00 +02:00
miha
961fa9ab4e [SCI-5631] Add ordering to index endpoint so pagination works, limit maximum page size for kaminari 2021-04-06 09:59:24 +02:00
Oleksii Kriuchykhin
d557739f2e Remove notification service check from health check endpoint [SCI-5526] 2021-03-04 09:38:25 +01:00
Oleksii Kriuchykhin
75da67b937 Update Rails to 6.1.1, ruby to 2.7.2 [SCI-5459] 2021-01-28 14:43:45 +01:00
Oleksii Kriuchykhin
67b3f853d7 Merge branch 'develop' into features/folders 2020-12-18 14:51:21 +01:00
Urban Rotnik
87b5552b27 Add equals team validations for project and folder 2020-12-02 14:53:46 +01:00
Urban Rotnik
df2b8ab3df Remove jsonapi_parameters gem, accept rails params in controller 2020-12-02 13:15:49 +01:00
Urban Rotnik
7c1a0a9044 Add projects to project_folder serializer 2020-12-02 13:15:49 +01:00
Urban Rotnik
97733498d9 Include project_folders at Projects API endpoints 2020-12-02 13:15:48 +01:00
Urban Rotnik
a4fc01d595 Add jsonapi_parameters gem, use relationships for parent_folder relation 2020-12-02 13:15:48 +01:00
Urban Rotnik
088fa79874 Add Project Folders API endpoints 2020-12-02 13:15:48 +01:00
Oleksii Kriuchykhin
eafc4cf367 Fix permission check for archived tasks [SCI-5235] 2020-11-20 14:39:17 +01:00
Miha Mencin
840b84aa9a
Merge pull request #2916 from okriuchykhin/ok_SCI_5139 
Add activities for step completion and checklist toggling through API [SCI-5139]
 2020-10-26 14:19:31 +01:00
Oleksii Kriuchykhin
4d64883963 Add activities for step completion and checklist toggling through API [SCI-5139] 2020-10-25 22:33:50 +01:00
Oleksii Kriuchykhin
5f70984919 Add token authentication to Active Storage controllers [SCI-5123] 2020-10-23 19:22:31 +02:00
Alex Kriuchykhin
3eb448c39b
Merge pull request #2862 from okriuchykhin/ok_SCI_5001 
Add Endpoins for Project Membership manipulation [SCI-5001]
 2020-09-25 14:25:20 +02:00
Urban Rotnik
f4f0bc706a Fix step deletion 2020-09-25 08:43:03 +02:00
Oleksii Kriuchykhin
2cda80dc5f Add Endpoins for Project Membership manipulation [SCI-5001] 2020-09-23 11:03:29 +02:00
Alex Kriuchykhin
136ce06022
Merge pull request #2851 from okriuchykhin/ok_SCI_4999 
Add Create and Update endpoints for experiments [SCI-4999]
 2020-09-22 10:20:00 +02:00
Alex Kriuchykhin
e19efe3975
Merge pull request #2850 from okriuchykhin/ok_SCI_4997 
Add Create and Update endpoints for projects [SCI-4997]
 2020-09-21 13:22:12 +02:00
Oleksii Kriuchykhin
0147e1aee1 Add Create and Update endpoints for experiments [SCI-4999] 2020-09-16 23:15:36 +02:00
Oleksii Kriuchykhin
dd4a62bb45 Add Create and Update endpoints for projects [SCI-4997] 2020-09-16 17:03:39 +02:00
Oleksii Kriuchykhin
57716fd89c Fix API and tests for new task completion logic [SCI-5004] 2020-09-15 11:19:25 +02:00
aignatov-bio
5cb497b61d Split params validation to create and update 2020-09-03 09:49:00 +02:00
aignatov-bio
4c7312faf9 Add tests for new workflow endpoints 2020-09-02 11:43:00 +02:00
aignatov-bio
68f31ce7ec Add api endpoints for workflows 2020-09-01 15:01:38 +02:00
Miha Mencin
b333700f40
Merge pull request #2779 from okriuchykhin/ok_SCI_4910 
Fix rendering of RTE in API [SCI-4910]
 2020-08-10 15:26:35 +02:00
Oleksii Kriuchykhin
91d9f5d6ee Fix rendering of RTE in API [SCI-4910] 2020-08-07 16:51:57 +02:00
Oleksii Kriuchykhin
3d3fd1625c Add created_at and user to API Step serializer [SCI-4911] 2020-08-07 14:54:05 +02:00
Alex Kriuchykhin
22015beeb5
Merge pull request #2757 from urbanrotnik/ur-sci-4813-base64-multipart-upload 
Extend asset API upload to support base64 [SCI-4813]
 2020-08-04 09:43:01 +02:00
Urban Rotnik
9b06510dcc Update PUT result file endpoint, refactor 2020-08-03 15:14:58 +02:00
Urban Rotnik
4958139699 Extend asset API upload to support base64 2020-07-24 14:57:03 +02:00
Oleksii Kriuchykhin
b4fab62d38 Merge branch 'develop' into ok_SCI_4776 2020-07-10 13:40:46 +02:00
Urban Rotnik
b11f166c38 Fix cucumber tests 2020-07-09 13:14:07 +02:00
Oleksii Kriuchykhin
dc481cf236 Add API endpoints for checklists, checklist items, tables, API code improvements [SCI-4776] 2020-07-03 16:48:29 +02:00
Urban Rotnik
c565cbe579 Filter out non active repositories and rows 2020-06-23 10:23:22 +02:00
aignatov-bio
10fdd0c1c7 Merge branch 'develop' into features/new-task-layout 2020-04-23 14:07:40 +02:00
Oleksii Kriuchykhin
837437309e Fix failing tests [SCI-4516] 2020-04-09 17:11:58 +02:00
aignatov-bio
af02201b43 Add decimals to repository column API 2020-04-01 13:29:21 +02:00
Oleksii Kriuchykhin
9d0d75acc5 Add API endpoints for new column types [SCI-4276] 2020-02-18 15:13:46 +01:00
Oleksii Kriuchykhin
b0c785f4fb Extend inventory import to support new data types [SCI-4220] 2020-02-03 15:20:01 +01:00
Oleksii Kriuchykhin
d9b9243da7 Merge branch 'develop' into features/new-column-types 2020-01-07 16:03:33 +01:00
Urban Rotnik
1e8261ac2a Update InventoryColumns API for new Status Type 2019-11-29 10:19:07 +01:00
Urban Rotnik
7ab12baef9 Add API endpoint for StatusItems 2019-11-29 10:19:07 +01:00
Oleksii Kriuchykhin
6b20a10473 Refactor Azure configuration [SCI-4098] 2019-11-26 15:09:40 +01:00
Urban Rotnik
5e97116c5a Update results params 2019-11-18 11:11:39 +01:00
Urban Rotnik
8b5e346770 Remove file deletion manually 2019-11-18 11:11:39 +01:00
Urban Rotnik
cc9d987321 Add update result(file) and create result(file) API endpoint 2019-11-18 11:11:38 +01:00
Urban Rotnik
060125a1c4 Add file size validation 2019-11-18 11:11:38 +01:00
Urban Rotnik
1be88baab1 Add API endpoint for Attachments resource 2019-11-18 11:11:38 +01:00
Urban Rotnik
e7083e188c Add API endpoint for Step resource 
[SCI-3835]
 2019-11-18 11:11:37 +01:00
Urban Rotnik
24033bec7a Add API endpoint for Task creation 2019-11-18 11:11:37 +01:00
Oleksii Kriuchykhin
3509543e7b Merge branch 'master' into ok_SCI_3881 2019-09-16 11:56:49 +02:00
mlorb
cf8c98dfa3
Merge pull request #2042 from biosistemika/hotfix-september 
Hotfix september
 2019-09-10 13:53:28 +02:00
Mojca Lorber
a312c0c4b8 fix bug on api endpoint when creating result 2019-09-04 13:41:06 +02:00
Oleksii Kriuchykhin
3918c893db Fix new office file creation [SCI-3778] 2019-08-21 13:26:11 +02:00
Urban Rotnik
077369d960 Update permissions for Repositories 2019-08-09 14:12:59 +02:00
Oleksii Kriuchykhin
552f69b9b1 Add system notifications service to health check endpoint [SCI-3522] 2019-05-31 15:52:47 +02:00
Anton Ignatov
aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00