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1271 commits

Author SHA1 Message Date
zmagod
f04a2f663a renamed organizations in config/ 2017-01-25 12:30:11 +01:00
zmagod
8c035a1981 renames organization in assets 2017-01-25 12:12:27 +01:00
okriuchykhin
35b8638598 Merge pull request #446 from okriuchykhin/ok_SCI_902_v2 
Add sanitization of group/type to sample edit [SCI-902]
 2017-01-25 12:05:30 +01:00
zmagod
72e13beee3 renamed organizations in views 2017-01-25 12:01:23 +01:00
Mojca Lorber
2277af534c fix table titles 2017-01-25 11:01:35 +01:00
zmagod
a6285f0431 renamed utilities 2017-01-25 10:24:50 +01:00
zmagod
9ae799d52c rename organization/org/Organization to Team in datatables 2017-01-25 09:48:49 +01:00
zmagod
9d90b9b42a rename Organization to Team in models 2017-01-24 17:08:48 +01:00
zmagod
c2c5616078 rename Organization to Team in controllers 2017-01-24 17:06:51 +01:00
Oleksii Kriuchykhin
fe6d6842c2 Add sanitization of group/type to sample edit [SCI-902] 2017-01-24 16:58:03 +01:00
zmagod
21c2f82582 rename controllers where org/organization 2017-01-24 16:57:14 +01:00
zmagod
a193850ae6 rename models where org/organization 2017-01-24 16:34:21 +01:00
Oleksii Kriuchykhin
365eef506c Fixes merge conflicts with smart-annotations branch 2017-01-24 15:20:50 +01:00
okriuchykhin
f1483e4cad Merge pull request #444 from okriuchykhin/ok_SCI_902_v2 
Add sanitization to sample groups/types [SCI-902]
 2017-01-24 14:44:55 +01:00
Oleksii Kriuchykhin
a04f05eeb3 Add sanitization to sample groups/types [SCI-902] 2017-01-24 14:39:54 +01:00
mlorb
02f314ce60 Merge pull request #443 from mlorb/ml_sci_919_v2 
Remove table of content and customize link target [SCI-919]
 2017-01-24 14:39:47 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
Mojca Lorber
4dc7998fdd Remove table of content and customize link target 2017-01-24 13:10:01 +01:00
Zmago Devetak
40bf293ec7 Merge pull request #441 from ZmagoD/zd_SCI_924 
adds smart annotation in task comments, refactor smart_annotation_par…
 2017-01-24 11:18:41 +01:00
mlorb
4253e3de2b Merge pull request #439 from mlorb/ml_sci_919 
Remove functionalities from rich text formatting [SCI-919]
 2017-01-24 11:03:34 +01:00
mz3944
34f832d123 Merge pull request #437 from mz3944/mz-sci-913 
Added smart annotations when adding new sample in samples table [SCI-913]
 2017-01-24 11:03:00 +01:00
okriuchykhin
7fa1f3d966 Merge pull request #438 from okriuchykhin/ok_SCI_921 
Remove unneeded HTML scrubber in protocol importer [SCI-921]
 2017-01-24 11:02:43 +01:00
Matej Zrimšek
b48e48e100 Prevent sample row in samples datatable from toggling when clicking on smart annotation link. [SCI-913] 2017-01-24 10:56:10 +01:00
zmagod
6e7fa21dd3 adds smart annotation in task comments, refactor smart_annotation_parser method, fix the user popover description [fixes SCI-924] 2017-01-24 10:51:12 +01:00
Matej Zrimšek
2e041d9e81 Added smart annotations when adding new sample in samples table. [SCI-913] 2017-01-24 10:23:26 +01:00
Oleksii Kriuchykhin
2434c73a0c Remove unneeded HTML scrabber in protocol importer [SCI-921] 2017-01-24 09:52:38 +01:00
Mojca Lorber
eb40513ada remove functionalities from rich text formatting 2017-01-24 09:44:37 +01:00
Oleksii Kriuchykhin
401b37956b Simplify protocol export start [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin
d555ba7905 Add export to protocol management page and code style improvements [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin
14a6705b55 Implemented protocol export through Zip::OutputStream [SCI-742] 2017-01-23 17:43:48 +01:00
Oleksii Kriuchykhin
1abd7fc574 Added xml schemas and zip gem [SCI-742] 2017-01-23 17:34:02 +01:00
Oleksii Kriuchykhin
69f31a62e7 Initial code commit [SCI-742] 2017-01-23 17:33:10 +01:00
Zmago Devetak
674999f987 Merge pull request #436 from ZmagoD/zd_SCI_922 
fixed user without permissions bug [fixes SCI-922]
 2017-01-23 17:25:07 +01:00
zmagod
20cde2654b fixed user without permissions bug [fixes SCI-922] 2017-01-23 10:53:42 +01:00
zmagod
9c3bc8dac7 fixes checklist item user popover bug [fixes SCI-907] 2017-01-23 09:47:04 +01:00
mz3944
fd63a1de12 Merge pull request #432 from mlorb/ml-sci-fix-847 
Add dynamic length for sample type/group field when adding new sample [SCI-847]
 2017-01-20 15:46:34 +01:00
mlorb
2d073c8c04 Merge pull request #430 from mlorb/ml_sci_826 
Display smart annotations in reports [SCi-826]
 2017-01-20 13:49:40 +01:00
Mojca Lorber
8e02c2e025 add locale - fix 2017-01-20 13:37:07 +01:00
mz3944
18a2e4c423 Merge pull request #433 from mz3944/mz-sci-914 
Edit of a sample in sample table does not work
 2017-01-20 13:02:05 +01:00
Zmago Devetak
c1e7cc83a7 Merge pull request #434 from ZmagoD/zd_SCI_915 
Text is deleted when entering smart annotation in rich text editor
 2017-01-20 13:01:29 +01:00
Zmago Devetak
7bd368e002 Merge pull request #431 from ZmagoD/zd_add_code_highlight 
Fixes code highlight and smart annotations experiments bug
 2017-01-20 12:59:21 +01:00
mlorb
9a3c56de97 Merge pull request #421 from mlorb/ml_sci_540 
Protocol steps/results - adding titles for tables [SCI-540]
 2017-01-20 11:41:49 +01:00
zmagod
71453398b1 bugfix 2017-01-20 11:33:49 +01:00
zmagod
4f7d62e79d removes unneeded annotations [fixes SCI-915] 2017-01-20 11:33:10 +01:00
Matej Zrimšek
5d65627808 Fixed sample editing in samples table. [SCI-914] 2017-01-20 11:10:17 +01:00
Mojca Lorber
3789769af3 add dynamic length for sample type/group field when adding new sample 2017-01-20 09:53:44 +01:00
zmagod
9550c6dd35 fixes highlight.js 2017-01-19 17:09:25 +01:00
Mojca Lorber
6653f0d4c1 small fixes 2017-01-19 16:42:14 +01:00
Mojca Lorber
6de83ff53b fix hound 2017-01-19 15:58:40 +01:00
Mojca Lorber
4ea154410a add to fields with rich text formatting 2017-01-19 15:27:24 +01:00
Matej Zrimšek
54f8b01341 Removed smart annotation filter button disabling, when no results are found for that filter (so that 'no result found' displays instead). [SCI-894] 2017-01-19 15:26:28 +01:00
Mojca Lorber
44de927cf4 display smart annotations in reports - without rich text fields 2017-01-19 14:22:54 +01:00
Oleksii Kriuchykhin
890c5e3c3d Add “no results found” message in smart annotation [SCI-886] 2017-01-19 13:42:58 +01:00
Zmago Devetak
039a8d7da6 Merge pull request #426 from ZmagoD/zd_add_tinyMCE 
Add tiny mce
 2017-01-19 12:57:55 +01:00
zmagod
2cbb8ba41a removed unneeded comments 2017-01-19 12:54:48 +01:00
mz3944
da604d2619 Merge pull request #427 from mz3944/mz-sci-908 
Some smart annotations refactoring [SCI-908]
 2017-01-19 12:15:20 +01:00
zmagod
f2d5066dc7 fix some bugs 2017-01-19 11:37:59 +01:00
Matej Zrimšek
5d86bbb812 Smart annotations improved documentation. [SCI-908] 2017-01-19 10:56:02 +01:00
Matej Zrimšek
fec83e8c45 Smart annotations refactoring. [SCI-908] 2017-01-19 10:55:43 +01:00
zmagod
2ccafdd670 bug fix 2017-01-19 10:12:01 +01:00
zmagod
27d3868f37 fix bugs 2017-01-19 09:40:39 +01:00
zmagod
88d7cb200e removed quill 2017-01-18 23:06:14 +01:00
zmagod
65fa631b1c adding tinyMce first run 2017-01-18 22:40:08 +01:00
okriuchykhin
18d329fb42 Merge pull request #423 from okriuchykhin/ok_SCI_896 
Make search work for full names in smart annotations [SCI-896]
 2017-01-18 17:58:52 +01:00
Oleksii Kriuchykhin
6555fd02b6 Make search work for full names in smart annotations [SCI-896] 2017-01-18 16:57:51 +01:00
okriuchykhin
7f6ceef9e9 Merge pull request #422 from okriuchykhin/ok_SCI_897 
Remove sample type and group from smart annotation [SCI-897]
 2017-01-18 16:26:25 +01:00
mz3944
b5e38afb64 Merge pull request #416 from mz3944/mz-sci-884 
Smart annotation bug fixes [SCI-884, SCI-889] [WIP]
 2017-01-18 16:13:19 +01:00
Matej Zrimšek
dbbb709bf2 Smart annotations minor refactoring. [SCI-884, SCI-889] 2017-01-18 16:04:39 +01:00
Matej Zrimšek
24458fe590 Smart annotations filter switching fixed/hacked. [SCI-884, SCI-889] 2017-01-18 15:29:48 +01:00
Oleksii Kriuchykhin
e45749d3b2 Remove sample type and group from smart annotation [SCI-897] 2017-01-18 14:46:53 +01:00
Mojca Lorber
f656a1093d fix hound 2017-01-18 14:40:24 +01:00
Mojca Lorber
6155a458e7 update search 2017-01-18 14:22:19 +01:00
Mojca Lorber
dde9854bf1 update protocol import/export and clone 2017-01-18 14:22:19 +01:00
Mojca Lorber
3b92ab9f36 add names to tables from protocol steps in reports 2017-01-18 14:22:19 +01:00
Mojca Lorber
b3c423c582 add table name in protocol step 2017-01-18 14:22:18 +01:00
okriuchykhin
8a220c2351 Merge pull request #414 from okriuchykhin/ok_SCI_887 
Do not show archived projects, experiments and tasks in smart annotations [SCI-887]
 2017-01-18 13:50:22 +01:00
Oleksii Kriuchykhin
55d0e82fcd Change If statement to ternary operator [SCI-887] 2017-01-18 13:43:21 +01:00
Oleksii Kriuchykhin
a490a12fb1 Add truncation of image description in the preview [SCI-873] 2017-01-18 13:28:56 +01:00
Luka Murn
cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
okriuchykhin
9dfa30fbb4 Merge pull request #418 from okriuchykhin/ok_SCI_855_v2 
Remove previous fix for popups [SCI-855]
 2017-01-18 11:00:54 +01:00
Oleksii Kriuchykhin
12eb1df69f Remove previous fix for popups [SCI-855] 2017-01-18 10:59:00 +01:00
Zmago Devetak
1b9f7db385 Merge pull request #405 from ZmagoD/zd_SCI_832 
Visualization of User smart annotation after saving the field
 2017-01-18 09:36:42 +01:00
okriuchykhin
781a68e0d5 Merge pull request #415 from okriuchykhin/ok_SCI_888 
Add missed space in the string [SCI-888]
 2017-01-18 09:34:51 +01:00
zmagod
cb0483a6e6 refactor 2017-01-18 08:34:29 +01:00
Oleksii Kriuchykhin
ea8f6a8c6b Fix issue in report editor [SCI-102] 2017-01-17 14:21:59 +01:00
Matej Zrimšek
3085452ec9 Fixed some hound alerts. [SCI-884] 2017-01-17 11:04:16 +01:00
Matej Zrimšek
d3c33c9dca Refactored smart annotation JS. [SCI-884] 2017-01-17 10:05:41 +01:00
Luka Murn
ffc2b56dff Fix String quotes 2017-01-17 08:28:41 +01:00
Luka Murn
2f48409fdd Merge pull request #409 from Ducz0r/lm-sci-813-fix-v2 
Fix filter not working correctly with hidden custom columns [SCI-813]
 2017-01-17 08:17:52 +01:00
Oleksii Kriuchykhin
0ce71884a5 Add missed space in the string [SCI-888] 2017-01-16 17:09:41 +01:00
Oleksii Kriuchykhin
50edaef4ff Do not show archived projects, experiments and tasks in smart annotations [SCI-887] 2017-01-16 16:55:10 +01:00
Luka Murn
16955dcee6 Fix Hound errors. 2017-01-16 15:58:37 +01:00
Luka Murn
a2935c6620 Add sample info modal popup to sample smart annotations 
This MR also loads datatables.js globally (as it's required by
the modal), so I removed it everywhere in code, and it shouldn't
be used anymore (e.g. '//= require datatables').

Closes SCI-892.
 2017-01-16 15:52:02 +01:00
Matej Zrimšek
2877126dc6 Fixed selected search filter button style. [SCI-884] 2017-01-16 12:52:03 +01:00
okriuchykhin
02bfd19d1c Merge pull request #385 from okriuchykhin/ok_SCI_102 
Fix XSS on activites and throghout the rest of app [SCI-102]
 2017-01-16 11:41:38 +01:00
mlorb
88cc87d168 Merge pull request #408 from mlorb/ml-sci-847-v2 
Adjust columns width in samples table header after selecting sample group [SCI-847]
 2017-01-16 10:52:00 +01:00
Luka Murn
a0e9e5afa8 Merge pull request #402 from mz3944/mz-sci-848-v2 
Unable to delete samples [SCI-848]
 2017-01-16 10:47:13 +01:00
Luka Murn
0fd9660eb7 Merge pull request #403 from Ducz0r/lm-sci-876-fix 
Year difference problems with notifications [SCI-876]
 2017-01-14 10:01:38 +01:00
Luka Murn
1acf258c70 Fix minor Zmagohound comment 2017-01-14 10:00:52 +01:00
Mojca Lorber
9f1a49847e fix table header again 2017-01-13 18:54:43 +01:00