Commit graph

844 commits

Author SHA1 Message Date
Oleksii Kriuchykhin a6b80589f2 Fix default order of the columns in repositories [SCI-1445] 2017-07-10 15:32:18 +02:00
Luka Murn 3e80f761b8 Add "about" modal, prepare hooks, VERSION system for addons
Also the addon generator is fixed so it properly creates VERSION
file for new addons.
2017-07-10 15:27:50 +02:00
Luka Murn 16e672b9d8 Add VERSION file where the sciNote Core version is stored 2017-07-10 09:26:35 +02:00
lenart 74e723d5d5 Changed data hook name and form id [SCI-1430] 2017-07-03 11:28:35 +02:00
lenart 8ec458db91 Added data hook and form id for GA tracking [SCI-1430] 2017-06-30 10:06:54 +02:00
Matej Zrimšek 4dbf5b0f53 Fixed sample types page load error, when viewing them on a task level. [SCI-1419] 2017-06-27 16:28:25 +02:00
mlorb 025050a7cd Merge pull request #716 from mlorb/ml-sci-1420
Add tooltips to navigation bar [SCI-1420]
2017-06-27 14:52:07 +02:00
Mojca Lorber d03be76f35 add tooltips to archive buttons 2017-06-27 14:48:45 +02:00
Mojca Lorber 0160956377 put all titles on links 2017-06-27 14:21:06 +02:00
Mojca Lorber 6bfb5e125c add tooltips to navigation bar 2017-06-27 13:46:49 +02:00
okriuchykhin d126391940 Merge pull request #710 from okriuchykhin/ok_SCI_1356
Add global search in custom repositories [SCI-1356]
2017-06-27 13:41:53 +02:00
Oleksii Kriuchykhin 69231060b0 Fix checking of my_modules presence [SCI-1356] 2017-06-27 13:39:08 +02:00
Zmago Devetak 6c541602e7 Merge pull request #715 from ZmagoD/zd_SCI_1328_v2
fixes smart annotations bug in reports [fixes SCI-1328]
2017-06-27 13:34:29 +02:00
Oleksii Kriuchykhin 4060ba2ac3 Code style fixes [SCI-1356] 2017-06-27 13:23:51 +02:00
mz3944 ca59ac5e36 Merge pull request #714 from mz3944/mz-SCI-1402
Missing error message when not selecting name in case of import repository file [SCI-1402]
2017-06-27 11:54:26 +02:00
zmagod 7b9410f02f fixes smart annotations bug in reports [fixes SCI-1328] 2017-06-27 11:26:32 +02:00
Matej Zrimšek f847b44067 Error is displayed and import is prevented in case repository name column is not mapped, when importing repository items from file. [SCI-1402] 2017-06-26 16:50:40 +02:00
Oleksii Kriuchykhin 84556cf744 Fix naming of repository items in modal and messages [SCI-1404] 2017-06-26 16:03:02 +02:00
Oleksii Kriuchykhin e038bc58fa Add global search in custom repositories [SCI-1356] 2017-06-23 16:12:56 +02:00
Zmago Devetak cffac82e88 Merge pull request #704 from ZmagoD/zd_SCI_1392
fixes bug with long text in parse records modal [fixes SCI-1392]
2017-06-22 17:47:15 +02:00
zmagod 2b2f513366 fixes export pdf error on production 2017-06-22 16:40:50 +02:00
zmagod a2e1aa5b36 fixes bug with long text in parse records modal [fixes SCI-1392] 2017-06-22 14:43:01 +02:00
zmagod 28129ebb73 refactor 2017-06-21 17:39:20 +02:00
zmagod bad52ceff1 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1336 2017-06-21 15:56:07 +02:00
zmagod f66fb49b56 adds import records to repositories [fixes SCI-1336] 2017-06-21 14:45:50 +02:00
zmagod f64e1ac713 fix locales 2017-06-21 09:31:39 +02:00
Matej Zrimšek d49524a26f Set correct repository icon on reports and done some needed refactoring with this. [SCI-1378] 2017-06-20 16:10:50 +02:00
mlorb 122ac7971f Merge pull request #692 from mlorb/ml_sci_1348
Fix cog position on repositories page [SCI-1348]
2017-06-19 15:16:01 +02:00
zmagod 70fa681519 split the import service 2017-06-19 14:05:37 +02:00
Mojca Lorber 4c3036af87 fix ordering of repositoris on task 2017-06-19 10:53:18 +02:00
Mojca Lorber b6f146f177 fix cog position on repositories page 2017-06-16 11:54:31 +02:00
Oleksii Kriuchykhin 94d74b8101 Make assigned column always visible in repositories [SCI-1346] 2017-06-16 11:47:41 +02:00
zmagod 2d3b5f4308 refactor 2017-06-14 10:55:24 +02:00
zmagod cee052fc19 added service object 2017-06-14 09:11:20 +02:00
okriuchykhin 97a94ff4a3 Merge pull request #679 from okriuchykhin/ok_SCI_1345
Fix repository view permissions for team guests [SCI-1345]
2017-06-13 15:47:44 +02:00
mlorb 074a47aae1 Merge pull request #675 from mlorb/ml_sci_1272
Fix permissions [SCI-1272]
2017-06-13 10:51:04 +02:00
Oleksii Kriuchykhin 2d693a3fb7 Fix repository view permissions for team guests [SCI-1345] 2017-06-13 10:33:08 +02:00
Zmago Devetak 19adddbfdb Merge pull request #666 from ZmagoD/zd_SCI_1337
truncate long repository names [fixes SCI-1337]
2017-06-13 09:32:43 +02:00
mlorb d0d7dc7468 Merge pull request #677 from mlorb/ml_sci_1344
Change custom repositories icon [SCI-1344]
2017-06-13 08:57:22 +02:00
zmagod a865253a2e first run 2017-06-13 08:10:10 +02:00
Mojca Lorber faa6456e28 change custom repositories icon 2017-06-12 18:00:28 +02:00
Mojca Lorber 9108102b42 fix permissions 2017-06-12 17:34:36 +02:00
Matej Zrimšek 29b721365a Moved export form to proper place in the code. [SCI-1275] 2017-06-09 19:44:28 +02:00
rekonder 4df8e1ffe3 Fixed bugs with duplicated generated csv, toggle columns and exportig right columns of selected repository 2017-06-09 19:44:28 +02:00
rekonder ede744849b Export repository [aj-SCI-1275] 2017-06-09 19:44:28 +02:00
Luka Murn e26337d5ee Merge pull request #671 from biosistemika/custom-repositories
Merge custom-repositories into master
2017-06-09 18:46:47 +02:00
zmagod ee9eaea47c truncate long repository names [fixes SCI-1337] 2017-06-09 11:20:57 +02:00
Zmago Devetak 4873624cec Merge pull request #658 from ZmagoD/zd_SCI_1011
Multiple file upload with drag & drop capability in steps and results
2017-06-09 10:03:33 +02:00
zmagod 33b996ffee refactor 2017-06-09 09:49:57 +02:00
Luka Murn c7c3c46d9d Fix dropdown 2017-06-08 15:26:57 +02:00
Mojca Lorber be52af4e4f fix rename/delete/copy modals not working 2017-06-08 15:13:00 +02:00
Mojca Lorber 0004c2b7d5 fix selection of tab after redirection 2017-06-08 14:17:27 +02:00
Mojca Lorber 71c523c406 load tabs with javascript 2017-06-08 13:47:30 +02:00
Luka Murn 2ab31aba2f Merge pull request #660 from Ducz0r/lm-sci-1270
Copy repository functionality [SCI-1270]
2017-06-08 11:45:57 +02:00
Luka Murn 27feb46d8f Merge pull request #659 from Ducz0r/lm-sci-1279
Include repositories in reports [SCI-1279]
2017-06-08 11:24:21 +02:00
Luka Murn 61eb52f86f Implement GUI for copying repositories
Closes SCI.1270.
2017-06-07 19:11:25 +02:00
Luka Murn 38361e4bb4 Setup initial GUI 2017-06-07 18:43:48 +02:00
Matej Zrimšek 77a225ec31 Added toggle between assigned and all repository records. [SCI-1276] 2017-06-07 18:13:25 +02:00
Luka Murn 02dd6636ba Allow saving & editing of reports with repository elements
Closes SCI-1279.
2017-06-07 16:55:00 +02:00
Luka Murn b5f6d1da94 Allow custom repositories to be added to reports 2017-06-07 16:54:32 +02:00
Oleksii Kriuchykhin 8b1190060e Add custom repository table [SCI-1274] 2017-06-07 15:23:25 +02:00
Zmago Devetak fcec42ae31 Merge pull request #645 from ZmagoD/zd_SCI_1278
generates samples csv file in background job [fixes SCI-1278]
2017-06-07 15:04:24 +02:00
zmagod c6bb20039b adds drag'n drop feature in task results [fixes SCI-1011], [fixes SCI-1310] and [fixes SCI-285] 2017-06-07 13:29:39 +02:00
Mojca Lorber 51c4eeb106 renaming 2017-06-06 15:50:43 +02:00
Mojca Lorber 39dda1ad5d refactoring 2017-06-06 13:18:44 +02:00
ajugo 887d9a4f52 Samples - show all/show assigned [SCI-1277] (#644)
* Samples - show all/show assigned [SCI-1277]

* Some fixes in code

* Some minor fixes in code

* Omit present

* Correct missed present

* Fixing hound warnings
2017-06-06 12:46:56 +02:00
Mojca Lorber acdea2198d code changes after rebasing 2017-06-06 11:10:55 +02:00
Mojca Lorber da98788031 small code fixes 2017-06-06 09:57:50 +02:00
Mojca Lorber 13bf4ad229 create new repository 2017-06-06 09:54:39 +02:00
Matej Zrimšek 419d638163 Renamed reposiotry edit and destroy permission helper. [fix 1269] 2017-06-05 17:36:26 +02:00
zmagod ab4961ddb1 adds overlay partial 2017-06-05 11:31:05 +02:00
zmagod 67d902db52 refactor 2017-06-05 10:43:58 +02:00
Matej Zrimšek d8d54232c3 After repository renaming user is redirected to the same repository. Removed the unimplemented repository copy dropdown option. [SCI-1269] 2017-06-02 19:08:51 +02:00
Matej Zrimšek 73aaef0949 Fixe repository rename modal submit button. Consistent variable renaming. [SCI-1269] 2017-06-02 17:52:04 +02:00
Matej Zrimšek 5c9a453439 Added permissions for deleting and renaming of repositories. [SCI-1269] 2017-06-02 17:50:34 +02:00
Matej Zrimšek 9a7048cc7a Code formatting updated for repositories. [SCI-1269] 2017-06-02 17:50:34 +02:00
Matej Zrimšek f8258812ef Repository remove and rename refactoring. [SCI-1269] 2017-06-02 17:50:34 +02:00
Matej Zrimšek 21a72da84f Added rename logic and improved remove logic. [SCI-1269] 2017-06-02 17:50:34 +02:00
Matej Zrimšek cdaac6a01b Added remove repository modal logic. [SCI-1269] 2017-06-02 17:50:33 +02:00
Matej Zrimšek 791bb934ca Remove repository modal logic (WIP). [SCI-1269] 2017-06-02 17:50:33 +02:00
Matej Zrimšek b92a760a5c Added dropdown GUI for editing repository. [SCI-1269] 2017-06-02 17:47:28 +02:00
zmagod 1c021b11db adds drag and drop files upload to steps [fixes SCI-1310] 2017-06-02 16:34:09 +02:00
okriuchykhin c88fc84538 Merge pull request #633 from okriuchykhin/ok_SCI_960_v2
Add smart annotations in sample info modal [SCI-960]
2017-05-31 11:31:14 +02:00
Luka Murn fcc3995049 Merge pull request #647 from biosistemika/master
Bring latest master changes into custom-repositories
2017-05-30 14:18:14 +02:00
zmagod 6e1f93dd11 minor fix 2017-05-29 14:47:05 +02:00
zmagod b527afd12b generates samples csv file in background job [fixes SCI-1278] 2017-05-29 14:42:55 +02:00
Zmago Devetak 1df6265326 Merge pull request #627 from ZmagoD/zd_SCI_1280
prevent to duplicate new step [fixes SCI-1280]
2017-05-29 09:55:22 +02:00
Mojca Lorber c3051421b2 change truncate function 2017-05-25 11:01:24 +02:00
Mojca Lorber 8540f88b7e small fix - renaming of ids and hrefs 2017-05-25 10:06:48 +02:00
mlorb 872f712be8 Merge branch 'custom-repositories' into ml_sci_1266_v2 2017-05-23 11:05:25 +02:00
mz3944 6b8c8deb16 Merge pull request #634 from mz3944/mz-SCI-414
Uncompleted steps not added to Reports
2017-05-23 09:58:05 +02:00
Oleksii Kriuchykhin b223646f07 Small improvements [SCI-1273] 2017-05-23 08:53:53 +02:00
Mojca Lorber a716a0b1db change breadcrumbs on protocol managements page 2017-05-22 17:58:42 +02:00
Mojca Lorber 9ae615264d add global repositories screen - tab control 2017-05-22 17:54:30 +02:00
Oleksii Kriuchykhin e99e3edb7b Add repositories dropdown to task navigation [SCI-1273] 2017-05-18 14:21:00 +02:00
Matej Zrimšek 20265ddd69 Readded result content modal for report creation and updated checkbox hierarchy logic accordingly. [fixes SCI-487] 2017-05-17 18:18:57 +02:00
Matej Zrimšek f78c80b148 Added possibility to add uncompleted steps to report. [closes SCI-414] 2017-05-17 13:25:21 +02:00
Oleksii Kriuchykhin 7f713b4293 Add smart annotations in sample info modal [SCI-960] 2017-05-17 13:06:21 +02:00
zmagod b21923cf98 prevent to duplicate new step [fixes SCI-1280] 2017-05-16 11:52:07 +02:00
Matej Zrimšek 2c6f888cbc Replace present? with more efficient exitst? for report content adding modal. [fixes SCI-487] 2017-05-15 18:56:41 +02:00
Matej Zrimšek 901558c733 Made checkbox logic sitewide available and applied it to other content adding modals in report aswell. [fixes SCI-487] 2017-05-15 18:20:42 +02:00
Matej Zrimšek ba693c65a8 Fixed adding contents to report logic and removed unneeded code. [fixes SCI-487] 2017-05-15 18:20:42 +02:00
Matej Zrimšek dbb79ebab1 Refactoring of specific modals for adding content to report and fixing their inconsistencies. [fixes SCI-487] 2017-05-15 17:43:12 +02:00
Matej Zrimšek b97cb91840 Refactoring of modal for adding content to report. [fixes SCI-487] 2017-05-15 17:43:12 +02:00
Matej Zrimšek 27cfd55ea5 Simplified popup modal for adding contents to report. [fixes SCI-487] 2017-05-15 17:43:12 +02:00
zmagod 9bec7dd96e Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1248 2017-05-15 14:49:37 +02:00
zmagod d34b2520b5 refactor results javascript, fixes bug with results archive [fixes SCI-1262] prevents duplicate request [fixes SCI-1248] 2017-05-12 15:59:58 +02:00
zmagod 070a829c49 change new results hendlers 2017-05-12 10:02:33 +02:00
Oleksii Kriuchykhin bb8c7c342c Add additional info to samples info modal [SCI-960] 2017-05-11 22:20:06 +02:00
zmagod 81a3cb0a41 adds results js code in modules 2017-05-11 16:54:28 +02:00
okriuchykhin 15f19b73fb Merge pull request #610 from okriuchykhin/ok_SCI_1253
Add notifications counter badge to project card [SCI-1253]
2017-05-11 11:11:09 +02:00
okriuchykhin 000ca26452 Merge pull request #607 from okriuchykhin/ok_SCI_1243
Add specific classes to task card for analytics [SCI-1243]
2017-05-11 11:10:05 +02:00
Oleksii Kriuchykhin a5926726ce Add notifications counter badge to project card [SCI-1253] 2017-05-10 17:28:37 +02:00
zmagod 2081e0a94b Merge branch 'master' of https://github.com/biosistemika/scinote-web into release-1.10.1 2017-05-10 15:14:17 +02:00
Oleksii Kriuchykhin 08e7f09d07 Add specific classes to task card for analytics [SCI-1243] 2017-05-10 10:33:34 +02:00
okriuchykhin ccc640f2bc Merge pull request #593 from okriuchykhin/ok_SCI_1158
Add advanced search options [SCI-1158]
2017-05-09 10:23:34 +02:00
okriuchykhin bd0b930382 Merge pull request #598 from okriuchykhin/ok_SCI_152
Add counters for users and comments on canvas [SCI-152]
2017-05-09 10:22:53 +02:00
Oleksii Kriuchykhin 344b9c290a Add counters for users and comments on canvas [SCI-152] 2017-05-08 17:32:55 +02:00
Zmago Devetak 4b816f5322 Merge pull request #568 from ZmagoD/zd_SCI_1119
Add images to fields with rich text formatting
2017-05-08 13:06:58 +02:00
Oleksii Kriuchykhin 0ee7e11620 Add advanced search options [SCI-1158] 2017-05-05 16:41:23 +02:00
Zmago Devetak de3d1172c1 Merge pull request #584 from ZmagoD/zd_SCI_1200
add popup for approval to complete the Task [fixes SCI-1200]
2017-05-05 14:57:27 +02:00
Zmago Devetak 28042d11e1 Merge pull request #589 from ZmagoD/zd_SCI_488
adds label to step in report [fixes SCI-488]
2017-05-05 14:56:01 +02:00
zmagod b22350136f adds label to step in report [fixes SCI-488] 2017-05-05 09:45:18 +02:00
zmagod 8d0c22327b adds asc order to checklists [fixes SCI-1228] 2017-05-04 15:17:34 +02:00
zmagod acc5594f1b add popup for approval to complete the Task [fixes SCI-1200] 2017-05-04 12:41:22 +02:00
Mojca Lorber f8f6a5f63a fix bug edit canvas not working and fix positioning of cloned task/workflow 2017-05-04 10:54:50 +02:00
Matej Zrimšek a5cffd06f3 Removed all tutorial data from ERB, so that all tutorial code is in JS. [needed for fixing SCI-719] 2017-04-25 16:03:50 +02:00
zmagod 86c6ae3b03 display tinyMCE images in reports 2017-04-25 09:53:35 +02:00
zmagod 55c8c498e2 add image upload functionality to result text 2017-04-24 12:28:27 +02:00
zmagod 550f563666 working version for steps first run 2017-04-21 16:09:04 +02:00
zmagod c25df63a14 add tinymce img importer and refactor input sanitize helper 2017-04-19 09:11:52 +02:00
okriuchykhin 3d805d529d Merge pull request #554 from okriuchykhin/ok_SCI_877
Add image preview to protocol repository [SCI-877]
2017-04-18 08:58:39 +02:00
Oleksii Kriuchykhin 4fac6484b5 Hide office edit buttons in protocol preview and fix image preview in protocol edit [SCI-877] 2017-04-14 16:05:35 +02:00
zmagod f104444a0c adds additional explanations [fixes SCI-1103] 2017-04-12 16:56:47 +02:00
Oleksii Kriuchykhin 181d981a51 Add image preview to protocol repository [SCI-877] 2017-04-12 16:05:38 +02:00
Zmago Devetak 9c31239318 Merge pull request #552 from biosistemika/release-1.9.0
Release 1.9.1
2017-04-12 13:08:37 +02:00
zmagod 9610c5f5a0 fix info dropdown links [fixes SCI-1141] 2017-04-07 11:31:09 +02:00
zmagod f16607579f refactor steps annotation 2017-04-06 13:03:13 +02:00
mlorb 317739af1e Merge pull request #530 from biosistemika/ml_sci_1044
Add data-hook and yadcf-filter plug-in [SCI-1044]
2017-03-31 14:00:23 +02:00
Mojca Lorber 503ee5b62e change place of data-hook 2017-03-30 17:21:29 +02:00
Mojca Lorber 9458f391e5 add data-hook and yadcf-filter plug-in 2017-03-29 15:59:51 +02:00
Zmago Devetak 0019fd19ea Merge pull request #525 from ZmagoD/zd_SCI_765
Export large files - utility class
2017-03-29 11:55:51 +02:00
zmagod 0096f9dc14 refactor 2017-03-29 09:32:23 +02:00
okriuchykhin 05a49e5a82 Merge pull request #528 from okriuchykhin/ok_SCI_1133
Fix secondary navigation on Mac [SCI-1133]
2017-03-29 09:30:34 +02:00
Oleksii Kriuchykhin 391c5af267 Fix secondary navigation on Mac [SCI-1133] 2017-03-28 14:36:52 +02:00
zmagod 7039420f99 add hook to canvas module actions 2017-03-28 10:43:39 +02:00
zmagod 0996c14449 Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_765 2017-03-27 10:41:58 +02:00
zmagod 2235fd3fb7 adds view if download expires 2017-03-27 10:38:28 +02:00
mlorb 3beb179f87 Merge pull request #514 from biosistemika/ml_sci_1089
Add error messages to sample group/type edit/delete actions [SCI-1089]
2017-03-27 09:57:32 +02:00
zmagod 4635a3320d Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1003_add_extends 2017-03-24 16:09:28 +01:00