scinote-eln/scinote-web
1
1
Fork 0
mirror of https://github.com/scinote-eln/scinote-web.git synced 2024-11-16 06:06:56 +08:00
Code Issues Projects Releases Packages Wiki Activity
11859 commits 31 branches 181 tags 167 MiB
Commit graph

1847 commits

Author SHA1 Message Date
zmagod
9d90b9b42a rename Organization to Team in models 2017-01-24 17:08:48 +01:00
zmagod
a193850ae6 rename models where org/organization 2017-01-24 16:34:21 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
zmagod
20cde2654b fixed user without permissions bug [fixes SCI-922] 2017-01-23 10:53:42 +01:00
zmagod
9550c6dd35 fixes highlight.js 2017-01-19 17:09:25 +01:00
mz3944
b5e38afb64 Merge pull request #416 from mz3944/mz-sci-884 
Smart annotation bug fixes [SCI-884, SCI-889] [WIP]
 2017-01-18 16:13:19 +01:00
Mojca Lorber
6155a458e7 update search 2017-01-18 14:22:19 +01:00
Mojca Lorber
dde9854bf1 update protocol import/export and clone 2017-01-18 14:22:19 +01:00
Mojca Lorber
b3c423c582 add table name in protocol step 2017-01-18 14:22:18 +01:00
Oleksii Kriuchykhin
55d0e82fcd Change If statement to ternary operator [SCI-887] 2017-01-18 13:43:21 +01:00
Luka Murn
cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
Matej Zrimšek
3085452ec9 Fixed some hound alerts. [SCI-884] 2017-01-17 11:04:16 +01:00
Oleksii Kriuchykhin
50edaef4ff Do not show archived projects, experiments and tasks in smart annotations [SCI-887] 2017-01-16 16:55:10 +01:00
okriuchykhin
02bfd19d1c Merge pull request #385 from okriuchykhin/ok_SCI_102 
Fix XSS on activites and throghout the rest of app [SCI-102]
 2017-01-16 11:41:38 +01:00
Matej Zrimšek
15d7944302 Preventing splitting of the words in the lookup query for # smart annotations. Query on the # is now performed on every character input, before it sometimes just filtered out the old (results count limited) query. Some refactoring of samrt annotations JS. [SCI-884, SCI-889] 2017-01-13 18:51:05 +01:00
Oleksii Kriuchykhin
75031e17b9 Remove double sanitization from views [SCI-102] 2017-01-12 16:54:15 +01:00
Oleksii Kriuchykhin
69b65c27f8 Remove input sanitization in the models [SCI-102] 2017-01-12 16:20:37 +01:00
Oleksii Kriuchykhin
0350f2f792 Add html escaping to name filelds in the views [SCI-102] 2017-01-12 11:03:14 +01:00
zmagod
1840fdb7e5 cleanup js 2017-01-12 09:52:29 +01:00
Oleksii Kriuchykhin
0546716a0b Improve user input sanitization, fix bugs [SCI-102] 2017-01-11 15:50:11 +01:00
zmagod
3a1ec0eb5e refactor [fixes SCI-834] [fixes SCI-837] [fixes SCI-823] [fixes SCI-835] [fixes SCI-836] [fixes SCI-824] 2017-01-11 14:56:47 +01:00
zmagod
fc76a4ae6d Merge branch 'smart-annotations' of https://github.com/biosistemika/scinote-web into zd_SCI_834 2017-01-10 14:22:04 +01:00
zmagod
89e8946a47 expand smart annotation 2017-01-10 14:14:21 +01:00
zmagod
6efcf49927 working version of dropdown filter 2017-01-10 14:14:21 +01:00
zmagod
53d20df449 added xregexp 2017-01-10 14:14:21 +01:00
zmagod
94262b56ef prepare data for atwho 2017-01-10 14:14:21 +01:00
Oleksii Kriuchykhin
aa2b573278 Enable image preview while editing steps and code style improvements [SCI-694] 2017-01-06 15:58:23 +01:00
Luka Murn
3cdd375a2d Merge pull request #388 from biosistemika/hotfix-1.6.1 
Hotfix 1.6.1
 2017-01-06 11:23:16 +01:00
Luka Murn
488613afcc Add index to users' full name attribute 2017-01-05 16:26:49 +01:00
Luka Murn
ef688feb4e Hotfix 1.6.1 
Set confirmed_at to created_at when using no
email confirmations and users sign up by themselves.
 2017-01-05 15:27:18 +01:00
Oleksii Kriuchykhin
0ecb6904d4 Add user input sanitizing in the models [SCI-102] 2017-01-05 13:31:35 +01:00
Luka Murn
a78bb79618 Temp commit 2017-01-05 12:07:17 +01:00
Luka Murn
3bee9d2e12 Save an (yet unworking) version of user smart annotations 
Used so other devs can start working on smart annotations.
 2017-01-04 10:54:02 +01:00
zmagod
a434649f42 Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-01-03 16:35:25 +01:00
Oleksii Kriuchykhin
4d3e002c81 Add sorting to Project's experiments overview [SCI-361] 2016-12-23 15:40:01 +01:00
zmagod
e554fdf805 code refactor 2016-12-21 16:52:15 +01:00
Oleksii Kriuchykhin
b537feb8a0 Added large preview [SCI-694] 2016-12-16 17:07:08 +01:00
Zmago Devetak
c8631077df Merge pull request #361 from biosistemika/improved-sample-table 
Improved sample table
 2016-12-16 15:37:54 +01:00
zmagod
b87246c8c2 cleanup spinner after edit step 2016-12-16 11:10:03 +01:00
Mojca Lorber
69d164da68 add new column on first position 2016-12-15 11:20:40 +01:00
zmagod
6d2fb3b02c Merge branch 'improved-sample-table' of https://github.com/biosistemika/scinote-web into zd_SCI_790 2016-12-14 17:05:00 +01:00
Oleksii Kriuchykhin
fa1cf1f04d Better handling of columns deleting with fixing columns ordering [SCI-783] 2016-12-14 15:23:00 +01:00
zmagod
3c1a275510 fixes invited user samples table [fixes SCI-790] 2016-12-13 10:56:13 +01:00
Luka Murn
d30a9780f4 Merge branch 'lm-sci-711-fix' of https://github.com/Ducz0r/scinote-web into Ducz0r-lm-sci-711-fix 
Conflicts:
	app/assets/javascripts/samples/sample_datatable.js
 2016-12-12 09:57:37 +01:00
Oleksii Kriuchykhin
274fd63a41 Initial code commit [SCI-779] 2016-12-09 15:21:26 +01:00
zmagod
de3099e4d1 removes asset_helper, fixes loading of processed thumbnails in results and steps and when loading protocols from repository 2016-12-09 13:59:49 +01:00
Luka Murn
1a8b141b95 Add delete custom field functionality 2016-12-09 13:49:19 +01:00
Mojca Lorber
0e3526c9ad Merge branch 'mlorb-ml-sci-696' into improved-sample-table 
Conflicts:
	app/assets/javascripts/samples/sample_datatable.js
 2016-12-08 15:44:50 +01:00
zmagod
40fdfef67f setup delayed_paperclip gem 2016-12-08 15:24:14 +01:00
Mojca Lorber
7d88e247fc refactoring 2016-12-08 14:41:35 +01:00
zmagod
ac52e643be cleanup direct upload 2016-12-08 11:26:13 +01:00
Nbernot
1eb3ddee53 Token expiration restored to 1 day. 2016-12-08 11:12:24 +01:00
Mojca Lorber
227fe9c284 change to after_create 2016-12-07 17:43:00 +01:00
Mojca Lorber
87dc76f4e3 change to update samples table state after initialize 2016-12-07 17:25:42 +01:00
Mojca Lorber
114a17ff0f change to create 2016-12-07 16:57:17 +01:00
Mojca Lorber
228990f9da fix samples table state, when adding new custom column 2016-12-07 16:37:16 +01:00
Mojca Lorber
195055f9cf change SAMPLES_TABLE_DEFAULT_STATE 2016-12-07 14:51:34 +01:00
Mojca Lorber
39b6fa66fe add SamplesTable for new users 2016-12-07 14:14:32 +01:00
Luka Murn
62353b6c3b Temporary change token expiration 2016-12-06 16:33:32 +01:00
Mojca Lorber
01e75fbbcc create samples table model and migration 2016-12-05 11:08:33 +01:00
zmagod
7725374c42 refactor sample types/groups [fixes SCI-700] 2016-12-02 09:58:35 +01:00
Luka Murn
372b455d7d Merge pull request #332 from Ducz0r/lm-sci-750-751 
Fix inviting users not working
 2016-12-01 15:52:40 +01:00
Luka Murn
6a770f6a7e Fix inviting users not working 
Closes SCI-750, SCI-751.

Probably reopens parts of SCI-746.
 2016-12-01 15:46:37 +01:00
Nejc Bernot
c54bd6df82 Added user ids to wopi tokens 2016-12-01 13:48:11 +01:00
Matej Zrimšek
46465060d0 Added automatic sign in with token authentication, needed when signing in from different webpage. [closes SCI-689] 2016-11-30 16:56:56 +01:00
Nejc Bernot
cb03ed8384 Users can now have multiple tokens 
A new token is generated whenever an edit or view file is called. Tokens have a TTL of one day.
Also enabled the toggling of both wopi and wopi test mode, using environmental variables.
 2016-11-30 16:48:42 +01:00
Luka Murn
76ec77fce4 Merge pull request #329 from biosistemika/simplify-signup 
Merge simplify-signup into master
 2016-11-30 09:41:20 +01:00
zmagod
a2e13441e5 removes create_sample_type modal and related js actions 2016-11-30 09:02:34 +01:00
Oleksii Kriuchykhin
d8f8e01a46 Code cleanup, added new image types to whitelist [SCI-736] 2016-11-28 11:13:20 +01:00
Oleksii Kriuchykhin
cc0aab2e59 Improve regexp for image whitelisting [SCI-736] 2016-11-28 10:08:54 +01:00
Luka Murn
7658ae264a Add uniqueness to sample_type & sample_group name 
Closes SCI-720.
 2016-11-25 16:15:05 +01:00
Oleksii Kriuchykhin
74f6455a8f Add whitelisting of supported image types [SCI-736] 2016-11-25 16:12:43 +01:00
Mojca Lorber
51abd8907c add switch to toggle email confirmations 2016-11-23 09:49:52 +01:00
Luka Murn
26d04b1f3c Merge branch 'rich-text-formatting' into 'master' 
Conflicts:
	Gemfile.lock
	app/assets/stylesheets/themes/scinote.scss
 2016-11-17 16:39:33 +01:00
Luka Murn
9d3685f872 Merge branch 'gamification' into 'master' 
Conflicts:
	app/controllers/users/invitations_controller.rb
	app/controllers/users/settings_controller.rb
 2016-11-17 16:30:18 +01:00
zmagod
e5ba134e83 fixes search 2016-11-16 14:50:06 +01:00
Luka Murn
eb4d031b79 Fix destroying of users in relation to notifications 2016-11-15 15:56:32 +01:00
Luka Murn
e733da728c Fix a bug where user could be assigned to same project twice 
Closes SCI-675.
 2016-11-15 10:44:32 +01:00
Zmago Devetak
914bd42448 Merge pull request #278 from ZmagoD/zd_search_bug_with_rich_text_editor 
strips the html tags from fearch query
 2016-11-15 10:30:29 +01:00
zmagod
3728a6cef9 fixed sql regex 2016-11-14 12:32:41 +01:00
Oleksii Kriuchykhin
ab895ae864 Show only protocols from Protocol Management in users statistics [SCI-658] 2016-11-11 12:14:57 +01:00
Mojca Lorber
3b7af3e66c fix validation logic 2016-11-11 11:42:16 +01:00
zmagod
630724df2b strips the html tags from fearch query 2016-11-11 11:41:23 +01:00
Luka Murn
c88f834ba9 Merge pull request #269 from Ducz0r/lm-sci-569 
Add a refactored invite users modal that can be reused throughout application
 2016-11-08 16:57:05 +01:00
zmagod
330afe80dc fixes notification model 2016-11-08 11:46:09 +01:00
mlorb
0793fb9f11 Merge pull request #260 from mlorb/ml_sci_614 
Add notification for removing user from team and removing user from project [SCI-614]
 2016-11-08 11:30:49 +01:00
Luka Murn
0ab62576a2 Add new modal to organization page, remove old modal code 2016-11-07 09:43:10 +01:00
zmagod
3c9bd6f511 enables notification to be extended 2016-11-02 14:44:16 +01:00
Mojca Lorber
749b108928 fix hound 2016-11-02 13:32:15 +01:00
Mojca Lorber
a2213e23b3 add notification for removing user from team and removing user from project 2016-11-02 11:52:41 +01:00
Oleksii Kriuchykhin
e8d20dfc01 Added additional activities [SCI-605] 2016-11-02 10:43:36 +01:00
Oleksii Kriuchykhin
d28edfb488 Added statistics block in users profile [SCI-566] 2016-10-27 13:44:27 +02:00
zmagod
e02132578a first run 2016-10-24 20:07:20 +02:00
Matej Zrimšek
f2cd9890dd Replaced hardcoded infinity values with constants. Added quotation marks to Ruby string constants in JS. 2016-10-17 11:57:47 +02:00
Matej Zrimšek
a6a2a237aa Removed unneeded ERB tags, which caused error. Minor refactoring. 2016-10-17 11:57:47 +02:00
Matej Zrimšek
5966911b92 Fixed Hound alerts. 2016-10-17 11:57:46 +02:00
Matej Zrimšek
0780bd2416 Ruby constants are now automatically available in JS. Refactoring was needed. 2016-10-17 11:57:37 +02:00
Matej Zrimšek
a3dfb59558 Added remaining constants. 2016-10-17 11:30:05 +02:00
Mojca Lorber
42f6b679f8 Adding system notifications email function in settings 2016-10-12 11:50:26 +02:00
Oleksii Kriuchykhin
90c853743c Additional fixes to email markup and logic [SCI-443] 2016-10-11 16:43:17 +02:00
Oleksii Kriuchykhin
3f219e1bfe Hound code style fixes [SCI-443] 2016-10-11 16:43:17 +02:00
Oleksii Kriuchykhin
5399033fce Added user settings for email notifications [SCI-443] 2016-10-11 16:43:17 +02:00
Oleksii Kriuchykhin
8dc956010c Initial code commit [SCI-443] 2016-10-11 16:43:17 +02:00
Jure Grabnar
1f67aec258 Prevent destroying protocols when file is edited 
SCI-552 #close
 2016-10-06 16:13:42 +02:00
Luka Murn
56d2240de5 Optimize data query in user_notification.rb 2016-10-05 16:21:13 +02:00
Oleksii Kriuchykhin
8907e54b49 Global notifications index page added [SCI-442] 2016-10-05 15:51:11 +02:00
Oleksii Kriuchykhin
8b5b0723d1 Initial code commit 2016-10-05 15:51:11 +02:00
Zmago Devetak
71ad5bf034 Merge pull request #190 from ZmagoD/zd_SCI_529 
Prepare settings screen for notifications
 2016-10-05 14:54:47 +02:00
zmagod
848beb5d4b minor fix 2016-10-05 09:46:18 +02:00
zmagod
d7a4f85ba1 added links to notification project name and task 2016-10-05 09:40:44 +02:00
zmagod
a68e7abc57 first run notification settings 2016-10-04 15:52:48 +02:00
Luka Murn
61cb9651c7 Merge pull request #188 from biosistemika/global-notifications 
Global notifications
 2016-10-04 08:30:50 +02:00
zmagod
c9bbab1004 added html_safe to outputed message, hide notifications number when dropdown is toggled, clear all unseen notification form count when the dropdown is toggled, generate notification only to other users 2016-10-03 20:31:00 +02:00
zmagod
0d23f05698 Merge branch 'global-notifications' of https://github.com/biosistemika/scinote-web into zd_SCI_440 2016-10-03 16:14:22 +02:00
Zmago Devetak
91c7d8a952 Merge pull request #176 from ZmagoD/zd_SCI_474 
Unify the comments
 2016-10-03 15:26:17 +02:00
zmagod
ea17182372 generate notifications [fixes SCI-440] 2016-10-03 11:37:29 +02:00
zmagod
2ee02ec472 mark all seen notifications 2016-10-03 08:20:23 +02:00
Jure Grabnar
1e14955ade Prevent deleting asset on step update 2016-10-01 18:47:05 +02:00
Jure Grabnar
d9fa882d6a Add check for locked files on step delete 2016-10-01 14:51:55 +02:00
Jure Grabnar
5c9e995e56 Don't delete asset on locked 2016-10-01 13:23:04 +02:00
Jure Grabnar
a6ebff06a7 Add error message to wopi discovery 
Fix ambigious open call
 2016-09-30 10:39:14 +02:00
Luka Murn
f70829d1a9 Merge pull request #179 from okriuchykhin/ok_SCI-380 
Fixes ordering of checklist items in search results [SCI-380]
 2016-09-30 08:28:07 +02:00
Jure Grabnar
ff47f29dc2 Add wopi file activity 
SCI-393 #close
 2016-09-29 16:16:42 +02:00
zmagod
e1a1b93d44 fixed migrations 2016-09-29 14:49:58 +02:00
Jure Grabnar
ed8df3cc62 Add favicon url to iframe 2016-09-29 12:19:29 +02:00
Jure Grabnar
3bc683be8f Fix access_token_ttl calculation 2016-09-29 10:57:08 +02:00
zmagod
cab1e9b521 start implement toolbar view 2016-09-28 16:03:52 +02:00
zmagod
485497334d generated notification related migrations and model tests 2016-09-28 14:18:52 +02:00
Jure Grabnar
5aea0fbb19 Refactor the rest of WOPI logic from Nejc 2016-09-28 09:33:44 +02:00
Jure Grabnar
b51f2a3027 Add basic WOPI proof checking 
Still missing validation of timestamp.
Remove web_console gem for testing.
Add relevant tests from manual for WOPI proof.
 2016-09-28 09:33:44 +02:00
Nejc Bernot
1b260785ec First working version of office integration 
Only works on scinote-preview
 2016-09-28 09:33:44 +02:00
Nejc Bernot
b2b1d5a8f5 Initial commit of WOPI integration 2016-09-28 09:33:44 +02:00
Oleksii Kriuchykhin
366a49f3a1 Fixes ordering of checklist items in search results [SCI-380] 2016-09-27 13:00:51 +02:00
zmagod
02bfa1949e fixed project comments 2016-09-27 09:00:02 +02:00
zmagod
30a8f52216 generate new experiment img after task restored [fixes SCI-465] 2016-09-26 09:48:49 +02:00
okriuchykhin
a7f3f793c8 Merge pull request #161 from okriuchykhin/ok_SCI-380 
Fixes issue with reordering of checklist items [fixes SCI-380]
 2016-09-23 10:37:56 +02:00
mz3944
cde7f3805f Merge pull request #165 from mz3944/mz_replace_hardcoded_values_with_constants_v2 
Added missing validation for protocol description.
 2016-09-22 17:36:18 +02:00
Oleksii Kriuchykhin
841e495234 Fix brace position [fixes SCI-380] 2016-09-22 16:48:15 +02:00
Matej Zrimšek
09405c667e Added missing validation for protocol description. [SCI-408] 2016-09-22 15:52:12 +02:00
Oleksii Kriuchykhin
0dd1196ae5 Fixes issue with move of experiments between projects [fixes SCI-400] 2016-09-22 15:10:15 +02:00
Matej Zrimšek
c614843044 Minor refactoring with hound alert fixes. 2016-09-21 19:48:18 +02:00
Matej Zrimšek
234918a76d Word wrapping and truncating added to whole application [fixes SCI-458]. Fixed some bugs which were related to long/too long text and validations. Modified parts of application to accomodate for longer text limits. 2016-09-21 19:48:18 +02:00
Matej Zrimšek
c6a23aab98 Added missing validations for text fields. Added text trimming, which removes spaces from beginning and ending of text. [fixes SCI-408] 2016-09-21 19:37:36 +02:00
zmagod
06b1992e94 Merge branch 'zd_SCI_436' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_436 2016-09-21 19:20:55 +02:00
Oleksii Kriuchykhin
011bb2d910 Fixes issue with reordering of checklist items [fixes SCI-380] 2016-09-21 14:06:47 +02:00
zmagod
42bbc47f5f first working version 2016-09-20 17:06:07 +02:00
zmagod
0ca65aeca5 fixed step comment sorting 2016-09-20 13:31:50 +02:00
zmagod
f48553e807 fixed ajax call 2016-09-19 16:12:07 +02:00
Matej Zrimšek
ffe6799313 Fixed hound alerts. 2016-09-16 15:57:54 +02:00
Matej Zrimšek
c2f0106993 Replaced hardcoded values with unified constants. Minor refactoring. Also front-end error handling was updated accordingly. [fixes SCI-408] 2016-09-16 15:56:44 +02:00
zmagod
938aa32190 js tweaks 2016-09-16 15:22:24 +02:00
mz3944
556238f39f Merge pull request #150 from mz3944/mz_local_file_upload_fix 
URL presigning is now used only when using S3 file uploading (caused …
 2016-09-16 09:17:23 +02:00
Zmago Devetak
7c4a62d138 Merge pull request #139 from ZmagoD/zd_SCI_410 
fixed moved experiment thumbnail [fixes SCI-410]
 2016-09-15 11:58:48 +02:00
zmagod
779b713148 refactor code 2016-09-15 11:55:02 +02:00
zmagod
d146970f6b add generate workflow image method for moved modules 2016-09-15 09:32:29 +02:00
Matej Zrimšek
76ff34a8a9 URL presigning is now used only when using S3 file uploading (caused error for local uploading) [fixes SCI-447], along with some refactoring. 2016-09-13 18:56:47 +02:00
zmagod
d5c5c55bf2 refactor 2016-09-13 16:32:33 +02:00
zmagod
29a2904513 fixed moving action of workflows and tasks 2016-09-13 14:51:53 +02:00
zmagod
691ae94d2c enabled to delete results in task archive [fixes SCI-370] 2016-09-13 13:26:04 +02:00
zmagod
1b31f8827d set experiment description to 255 2016-09-08 14:35:52 +02:00
Zmago Devetak
1368716aa0 Merge pull request #130 from ZmagoD/zd_SCI_348 
project overview - updating (or creating new) experiment details
 2016-09-08 12:49:35 +02:00
zmagod
487d3e18f4 fixed moved experiment thumbnail [fixes SCI-410] 2016-09-07 07:55:45 +02:00
zmagod
b672d85405 fixed error message duplication 2016-09-06 11:46:28 +02:00
Matej Zrimšek
9fb30c7661 Fixes files deletion when rails worker is running [fixes SCI-411] and fixes picture's style files deletion. 2016-09-06 10:40:01 +02:00
Mojca Lorber
740392c687 optimization 2016-09-05 10:58:37 +02:00
Mojca Lorber
4bce00ac61 fixes hound 2016-09-02 11:54:20 +02:00
Mojca Lorber
83034f705d adds tasks, experiment and project category in protocol search results 2016-09-02 11:45:54 +02:00
Zmago Devetak
5b4eb07960 Merge pull request #118 from ZmagoD/zd_SCI_398 
fixes workflow img bug [fixes SCI-398]
 2016-08-30 14:55:33 +02:00
zmagod
a947354fb5 fixes update times [fixes SCI-398] 2016-08-30 13:23:48 +02:00
Luka Murn
2b382fee0f Merge pull request #113 from Ducz0r/lm-add-first-time-activities 
Fix first time data generator & fake data generator
 2016-08-30 13:07:52 +02:00
Luka Murn
0e0228cb8c Codestyle fixes 2016-08-30 13:06:49 +02:00
zmagod
95ab35e3d6 cleanup update timestamp 2016-08-30 12:58:52 +02:00
Luka Murn
c86d21d689 Fix bug in organization.rb 
Bug was related to introduction of experiment level.
 2016-08-30 09:46:54 +02:00
zmagod
17aacc8ff5 fixes step destroing bug and fixes reports [fixes SCI-247] 2016-08-29 12:04:46 +02:00
Matej Zrimšek
e3a7f45fdf Merge branch 'master' into mz_file_upload_and_client_side_upgrade 
Conflicts:
	app/assets/javascripts/application.js
	app/views/results/_result_asset.html.erb
	app/views/steps/_step.html.erb
 2016-08-26 11:13:40 +02:00
Matej Zrimšek
04d9163ff6 Paperclip file spoofing corrected/modified. 2016-08-25 18:57:06 +02:00
Luka Murn
a480c8d403 Styling fixes 2016-08-25 13:59:50 +02:00
Luka Murn
b0d7b9dc75 Generate activities when editing/deleting comments 2016-08-25 13:51:31 +02:00
Luka Murn
24dd25d9f5 Add edit/delete result comment functionality 
Lessons learned during this fix:
Don't use dependant: :destroy on both ends of association
between 2 ActiveRecords, or you will run into stack overflow.
 2016-08-25 13:51:31 +02:00
Luka Murn
9e3bb8edb7 Add dependant: :destroy to comments 2016-08-25 13:51:30 +02:00
Zmago Devetak
0de7ea31ea Merge pull request #90 from ZmagoD/zd_SCI_376 
fixes cloned experiment protocol [fixes SCI-376]
 2016-08-24 14:12:19 +02:00
Jure Grabnar
00da7efb44 Merge remote-tracking branch 'origin/jg_SCI_328_moving_workflows' 
Conflicts:
	app/models/experiment.rb

SCI-328 #close
 2016-08-24 13:11:10 +02:00
Jure Grabnar
dff5abf3d9 Fix module moving position not being updated 2016-08-24 11:42:21 +02:00
zmagod
2bbb439745 fixes cloned experiment protocol [fixes SCI-376] 2016-08-23 16:15:45 +02:00
Jure Grabnar
67768c8865 Fix Hound errors 2016-08-23 11:08:10 +02:00
Jure Grabnar
358f2b1c47 Add moving for newly created modules 2016-08-23 10:00:34 +02:00
Jure Grabnar
c0edf51054 Fix bounding box algorithm, can move new modules 2016-08-23 09:00:25 +02:00
Jure Grabnar
8940ba891b Add initial position for moving workflows 2016-08-22 17:52:55 +02:00
zmagod
cac5033eba set ajax for workflow img 2016-08-19 15:36:12 +02:00
Jure Grabnar
80498260e5 Add backend for moving task from canvas 2016-08-19 13:53:43 +02:00
Jure Grabnar
f575303d11 Update get_new_position for new canvas size 
SCI-358 #close
 2016-08-19 13:42:28 +02:00
Zmago Devetak
58930f3456 Merge pull request #73 from ZmagoD/zd_SCI_344 
fixes user duplication [fixes SCI-344]
 2016-08-18 13:28:59 +02:00
zmagod
2216a86db5 hound again 2016-08-18 13:27:46 +02:00
zmagod
d3f61bdd18 fixes hound alert 2016-08-18 13:24:44 +02:00
zmagod
4b5be7530c fixed task archive 2016-08-18 11:53:57 +02:00
zmagod
da2b9ccf82 fixes user duplication [fixes SCI-344] 2016-08-18 11:26:52 +02:00
zmagod
fa08b861d0 fixed experiments archive bug 2016-08-18 10:55:29 +02:00
Zmago Devetak
b6ccecf478 Merge pull request #69 from ZmagoD/zd_SCI_335 
cleans experiment form report if moved [fixes SCI-335]
 2016-08-18 08:37:09 +02:00
Zmago Devetak
f2e08db106 Merge pull request #67 from ZmagoD/zd_SCI_337 
Zd sci 337
 2016-08-18 08:06:38 +02:00
Matej Zrimšek
4ad384df5a Fixed hound alerts. 2016-08-17 21:02:05 +02:00
Matej Zrimšek
27a9dac412 File permissions corrected, with some refactoring. 2016-08-17 18:23:24 +02:00
Matej Zrimšek
e4a6a3944e Added deleting of files on S3 server when editing/removing a file. Some refactoring. 2016-08-17 18:13:35 +02:00
Matej Zrimšek
854ef0d227 Special characters caused error [fixes SCI-315]. 2016-08-17 18:10:47 +02:00
Matej Zrimšek
951cf67b3d A lot of file uploading edge cases considered. File uploading is now actually redirected to S3 server, as before was not. Error functions changed and error output format specified, which should be used consistently throughout the application. Some other refactoring. 2016-08-17 18:08:21 +02:00
zmagod
c27c6c19e5 cleans experiment form report if moved [fixes SCI-335] 2016-08-17 15:21:53 +02:00
zmagod
6c5cc8aac9 fixes notification [fixes SCI-337] 2016-08-17 13:17:40 +02:00
zmagod
d557f3249f Adds single tasks to the experiment img [fixes SCI-329] 2016-08-17 11:13:49 +02:00
Zmago Devetak
762b805651 Merge pull request #55 from ZmagoD/zd_papperclip_migration_bug 
fixes migration error
 2016-08-16 10:44:53 +02:00
Jure Grabnar
a29b56b0bd Even more candy for our dog 2016-08-16 09:15:29 +02:00
Jure Grabnar
b25a7758db Give a candy to our special dog 2016-08-16 09:10:45 +02:00
Jure Grabnar
042a33f2c7 Add activity for moving 2016-08-16 08:49:24 +02:00
Jure Grabnar
e55c66b3d0 Add query for moveable projects 2016-08-16 08:47:04 +02:00
Jure Grabnar
555ed05ae6 Refactor/DRY dropdown actions code for experiment 2016-08-12 10:18:35 +02:00
Jure Grabnar
2f6ccac3bc Add unique experiment name and copy image when cloning 2016-08-11 16:58:31 +02:00
Jure Grabnar
6e8e9ecf21 Fix activities and the dreaded no project for modules error 2016-08-11 16:57:29 +02:00
Jure Grabnar
3b259d34b0 Basic cloning of experiment works 
Still missing:
- cloning of assets
- cloning of experiment image
 2016-08-11 15:13:36 +02:00
zmagod
060da59bbb fixes migration error 2016-08-11 09:19:12 +02:00
zmagod
c866e90b33 Merge branch 'zd_add_image_to_project_preview' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_add_image_to_project_preview 2016-08-10 11:33:37 +02:00
Jure Grabnar
b2855d69f6 Fix hound warning 2016-08-10 09:24:06 +02:00
Jure Grabnar
15d66c7884 Change validation for experiment workimg 2016-08-10 08:58:29 +02:00
Jure Grabnar
7b0f323576 Add expiring URL to experiment img 2016-08-09 16:37:44 +02:00
zmagod
f77e0d4a6e changed workflow image name 2016-08-09 16:27:28 +02:00
zmagod
5f3a5cb845 fixed project overview 2016-08-09 14:26:08 +02:00
Jure Grabnar
e995165876 Double quotes -> single quotes (#hound) 2016-08-09 13:19:32 +02:00
zmagod
176aad4c6d fixes multiple graphs rendering 2016-08-09 11:19:07 +02:00
Jure Grabnar
208e85e7e0 Remove archived experiments from reports 2016-08-09 11:17:25 +02:00
zmagod
1a56396eb5 add workflow image to project overview page [fixes SCI-41] 2016-08-08 16:02:17 +02:00
Jure Grabnar
5a023483d7 Prepare views for experiment archive 2016-08-08 14:19:35 +02:00
jbargu
3f91e7a476 Merge pull request #47 from biosistemika/jg_explvl_reports 
Update reports with experiment level

[Fixes SCI-35].
 2016-08-08 08:51:23 +02:00
zmagod
57ac34e9f4 add samples to experiment page [fixes SCI-43] 2016-08-03 12:57:51 +02:00
Jure Grabnar
964b51f84a Add experiment reports element 2016-08-03 12:52:52 +02:00
Luka Murn
ecf5b5a2c1 Feed the Hound 2016-07-29 16:46:25 +02:00
Luka Murn
34af50a9d0 Fix breadcrumbs & sidebar so it works 2016-07-29 15:47:41 +02:00
zmagod
d16c0fe706 fixed edit canvas 2016-07-28 10:09:05 +02:00
Jure Grabnar
1a1c4bb68a Remove needless join from MyModuleGroup 2016-07-27 10:18:57 +02:00
Jure Grabnar
0361f006ca Add SearchableModel to Experiment and fix children 2016-07-26 12:26:48 +02:00
Zmago Devetak
b13747291e Merge pull request #32 from ZmagoD/zd_SCI_31 
Fixing modules after integrating experiment-level
 2016-07-26 09:18:16 +02:00
zmagod
346bffe08f fixed protocol.rb 2016-07-26 09:17:24 +02:00
zmagod
c27ffa9fbf fixed project_my_module method 2016-07-26 08:44:09 +02:00
Luka Murn
3187843d14 Change updated_by -> last_modified_by 2016-07-25 14:47:13 +02:00
zmagod
18d66ece56 migrated model related functions to experiment.rb [fixes: SCI-31] 2016-07-25 11:25:10 +02:00
zmagod
b3c61cfa41 fixed project_my_modules method 2016-07-25 09:13:04 +02:00
zmagod
7c9a0bc2bb fixed models 2016-07-22 15:36:48 +02:00
zmagod
389ee7ea43 start fixing modules 2016-07-22 14:31:09 +02:00
Luka Murn
785fb2cba1 Initial migration & changes in ActiveRecords 2016-07-22 10:43:55 +02:00
Luka Murn
076b67620f Migration GitLab -> GitHub 2016-07-21 13:11:15 +02:00
Luka Murn
055298fee8 Initial commit. 2016-02-12 16:52:43 +01:00