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568 commits

Author SHA1 Message Date
ajugo db15297090
Change asset estimated_size to bigint [SCI-8229] (#5304) 2023-04-25 15:13:50 +02:00
Martin Artnik 6163ac984a Fix migration for archived protocols [SCI-8225] 2023-03-30 13:22:25 +02:00
Oleksii Kriuchykhin 9885dc0f29 Update protocols migration for linked protocols [SCI-6931] 2023-03-27 11:39:09 +02:00
artoscinote 00191e41de
Merge pull request #5192 from scinote-eln/features/token-revocation 
Features/token revocation
 2023-03-24 11:13:38 +01:00
Martin Artnik 2ddbc0ed90 Fix protocol migration/assignment issues [SCI-8182] 2023-03-24 10:58:43 +01:00
Giga Chubinidze 67539b15de Protocol permissions - button display [SCI-8058] 2023-03-14 12:12:54 +04:00
Alex Kriuchykhin d285a0a9db
Preserve old protocol types for backward compatibility, fix protocol draft user permissions [SCI-8083] (#5123) 2023-03-13 09:55:53 +01:00
Alex Kriuchykhin 3a60a0aacd
Change migration of protocol templates - do not publish unlinked protocols [SCI-8062] (#5062) 2023-03-03 10:24:14 +01:00
ajugo b24c823597
Add linked_at to the Protocols [SCI-7964] (#5042) 
* Add linked_at to the Protocols [SCI-7964]

* Add activity subject_type constrain for migration query [SCI-7964]
 2023-03-01 11:33:32 +01:00
Martin Artnik 89459ae21a Protocol group assignment fixes [SCI-7978] 2023-02-24 17:24:25 +01:00
Martin Artnik a43f70f8ba Set default public user role for visible projects [SCI-7978] 2023-02-23 15:28:46 +01:00
Anton ea9d2d8291 Merge branch 'develop' into features/protocol_versioning 2023-02-14 11:07:58 +01:00
Alex Kriuchykhin b71f360261
Add visibility and default public user role fields to protocols [SCI-7819] (#4963) 2023-02-13 16:18:26 +01:00
Martin Artnik f880ea46ce Add connected device logging [SCI-7632] 2023-02-13 11:32:18 +01:00
Anton 3849b1a7a1 Save handson table metadata [SCI-7834] 2023-02-06 14:21:55 +01:00
Oleksii Kriuchykhin 6ac64aaf34 Add permission for protocol draft management [SCI-7718] 2023-01-26 15:41:41 +01:00
Alex Kriuchykhin 7f3999fa4f
Add protocol published versions modal [SCI-7519] (#4725) 2023-01-20 14:29:25 +01:00
Alex Kriuchykhin 2ea5000ea5
Merge pull request #4737 from okriuchykhin/ok_SCI_7643 
Add missing permissions for inventories and protocols [SCI-7643]
 2023-01-04 13:22:33 +01:00
Oleksii Kriuchykhin 06f3c34e3a Add missing permissions for inventories and protocols [SCI-7643] 2022-12-22 16:46:26 +01:00
aignatov-bio ea661f3c19
Merge branch 'develop' into features/new_experiment_views 2022-12-22 13:33:25 +01:00
Oleksii Kriuchykhin 0d6c6ccd9e Introduce searchability by ID in global search field [SCI-7208] 2022-12-02 11:16:18 +01:00
artoscinote 4664ef1d9b
Implement task cloning in experiments table [SCI-7382] (#4653) 
* Implement task cloning in experiments table [SCI-7382]

* Fix provisioning status polling [SCI-7382]

* Remove unused method [SCI-7382]

* Fix linter issues [SCI-7382]

* Fix fetching last clone number [SCI-7382]

* Fixing experiment duplication [SCI-7382]

* Add truncation to cloned name [SCI-7382]

* Add readable scope to batch clone action [SCI-7382]

* Move 'Clone' to translations, simplify JS [SCI-7382]
 2022-12-01 15:08:59 +01:00
Oleksii Kriuchykhin 9b72474943 Add versioning implementation to protocols data layer [SCI-7513] 2022-11-30 19:52:36 +01:00
Giga Chubinidze 43f8370a08 add IDs to the protocol templates tables [SCI-7179] 2022-11-22 13:55:41 +04:00
G-Chubinidze 82d36ccc25
Update 20221108104529_add_my_module_code_index.rb 2022-11-08 17:10:22 +04:00
Giga Chubinidze 18fe2cd207 update display of the current tasks with IDs [SCI-7205] 2022-11-08 16:06:48 +04:00
Oleksii Kriuchykhin a9e7e81e51 Fix typo in update team assignments service, improve shared inventories migration [SCI-7360] 2022-10-21 14:04:33 +02:00
Oleksii Kriuchykhin 7d3f48199a Fix shared repositories migration, update sharing logic and permissions [SCI-7360] 2022-10-21 11:00:52 +02:00
Alex Kriuchykhin 482044a448
Merge pull request #4542 from rekonder/aj_SCI_7346 
Update default density for label templates [SCI-7346]
 2022-10-19 10:04:53 +02:00
Oleksii Kriuchykhin 27fc496858 Fix team level permissions migration for protocols [SCI-7348] 2022-10-18 11:43:31 +02:00
Andrej 538f141aaf Change default density for label templates [SCI-7346] 2022-10-18 09:41:25 +02:00
Oleksii Kriuchykhin ee38de6740 Fix team assignments migration in order to preserve timestamps [SCI-7329] 2022-10-13 17:09:27 +02:00
ajugo 36e061e3bb
Label template migration fix (#4523) 
* Fix migration for label template

* Fix label template migration

* Fix migration

* Fix migration

* Add default to label template migration
 2022-10-12 15:47:10 +02:00
ajugo 89614b75d5
Fix migration for label template (#4520) 
* Fix migration for label template

* Fix label template migration

* Fix migration

* Fix migration
 2022-10-12 15:03:55 +02:00
ajugo 0493d6f31d
Fix label template preview issues [SCI-7313] (#4514) 
* Add preview label at open modal [SCI-7313]

* Add density and unit to the label template [SCI-7313]
 2022-10-11 10:58:37 +02:00
Martin Artnik 37345e9225 Migration fixes [SCI-7219] 2022-09-16 15:33:19 +02:00
Anton 0c596bb701 Merge branch 'develop' into features/label-templates 2022-09-15 10:40:17 +02:00
Anton d7990cb058 Add new permissions for label templates [SCI-7088] 2022-09-14 15:13:13 +02:00
aignatov-bio 4182194b31
Merge branch 'features/label-templates' into features/team-permissions 2022-09-14 14:34:02 +02:00
Anton 75a15310ac Merge branch 'features/team-permissions' into features/label-templates 2022-09-13 14:26:15 +02:00
Oleksii Kriuchykhin f586c73dc8 Convert team_repository to polymorphic relation [SCI-6917] 2022-08-31 16:42:08 +02:00
artoscinote 7a7df03396
Implement label preview component [SCI-7050] (#4370) 2022-08-24 13:55:54 +02:00
Oleksii Kriuchykhin b405cadf22 Migrate protocol names from linked protocols in inventory if empty [SCI-7110] 2022-08-18 14:33:43 +02:00
Oleksii Kriuchykhin f5178fdd92 Improve speed of step orderable elements migration [SCI-7092] 2022-08-11 15:36:48 +02:00
artoscinote 464f9935a4
Migration fixes [SCI-7046] (#4321) 2022-08-08 11:21:38 +02:00
artoscinote eb619184a5
Implement typed label templates [SCI-7046] (#4316) 
* Implement typed label templates [SCI-7046]

* Add structure.sql, fix migration [SCI-7046]

* Fix method name [SCI-7046]

* Add dependent option to team - label_template relation [SCI-7046]

* Migration code style, add input sanitization [SCI-7046]

* Fix new label creation [SCI-7046]
 2022-08-08 10:06:00 +02:00
ajugo ad4f52d912
Add Label template list screen - view mode [SCI-7018] (#4292) 
* Initial label template datatable [SCI-7018]

* Add new columns to LabelTemplate and update datatable view [SCI-7018]

* Fix after rebase [SCI-7018]

* Fix migration, disable checkboxes in view mode and fix label template to team level [SCI-7018]
 2022-07-27 10:10:32 +02:00
Oleksii Kriuchykhin d0d528aeac Update inventory global sharing logic to use new user assignments [SCI-6947] 2022-07-07 22:31:07 +02:00
Alex Kriuchykhin 26820b9abb
Fix subject references for repository row activities [SCI-6906] (#4203) 2022-07-07 12:00:35 +02:00
Martin Artnik 910c36af08 Merge branch 'features/step-editing-improvements' into develop 2022-07-05 10:12:10 +02:00
Oleksii Kriuchykhin 17178c28d5 Update repository sharing actions [SCI-6918] 2022-07-01 11:55:27 +02:00
Oleksii Kriuchykhin 3fbc5af9a1 Convert team_repository to polymorphic relation [SCI-6917] 2022-06-29 15:22:22 +02:00
Oleksii Kriuchykhin c79ff8f050 Migrate TeamRepository to new permissions [SCI-6916] 2022-06-28 13:13:36 +02:00
Oleksii Kriuchykhin 589a7d3219 Add team reference to user assignments model [SCI-6915] 2022-06-24 10:44:28 +02:00
artoscinote 7cb9b9777f
Add step_texts to all past reports as default [SCI-6866] (#4137) 2022-06-10 10:42:13 +02:00
artoscinote e0536c85ac Fix label templates (#4128) 2022-06-06 10:15:58 +02:00
Martin Artnik 9abbe22c26 Merge branch 'develop' into features/step-editing-improvements 2022-06-02 11:26:39 +02:00
Oleksii Kriuchykhin c120a357cd Add permissions for Report model [SCI-6834] 2022-05-24 10:59:21 +02:00
Oleksii Kriuchykhin 39cfcd5522 Add migration for user team roles, including protocols and inventories [SCI-6820] 2022-05-23 16:28:53 +02:00
artoscinote ec5574dde5
Update default label template [SCI-6763] (#4064) 2022-05-09 10:15:46 +02:00
Anton 6a827022f6 Add insert step element dropdown [SCI-6758] 2022-05-03 13:22:26 +02:00
Oleksii Kriuchykhin 989503febe Migrate tiny MCE images to step texts [SCI-6712] 2022-04-21 13:59:15 +02:00
Oleksii Kriuchykhin 5a17ad6be9 Add models for step orderable elements, migrate step descriptions [SCI-6712] 2022-04-19 13:26:13 +02:00
Alex Kriuchykhin f7f03b19c0
Add locking and unique index to repository row assigning [SCI-6591] (#3921) 2022-04-13 10:54:23 +02:00
Martin Artnik 45a325e824 Merge branch 'develop' into features/stock-management 2022-03-30 11:10:40 +02:00
ajugo 5cc97122e5
Viewer role does not see any tasks in archived project [SCI-6616] (#3958) 
* Fix viewer role not see any tasks in archived project [SCI-6616]

* Fix rollback for add read archive permission migration [SCI-6616]
 2022-03-30 11:01:26 +02:00
Alex Kriuchykhin 0341adf037
Add stock consumption permission to user roles [SCI-6665] (#3966) 2022-03-30 10:13:31 +02:00
Alex Kriuchykhin 186898b442
Add last_transition_error column to tasks [SCI-6610] (#3949) 2022-03-21 14:13:57 +01:00
Anton 8b8e2c6d92 Merge branch 'develop' into features/stock-management 2022-03-14 11:56:38 +01:00
artoscinote 35dfa15e57
Implement hidden repository cell reminders [SCI-6504] (#3933) 2022-03-11 12:38:45 +01:00
artoscinote ea6873b465
Implement low stock threshold column [SCI-6555] (#3907) 2022-03-03 11:13:17 +01:00
Alex Kriuchykhin 6b51b8a35c
Fix handling of date values in repositories [SCI-6551] (#3877) 2022-02-21 12:08:35 +01:00
Alex Kriuchykhin b9204e1ce3
Add type specific indices for date time repository values [SCI-6485] (#3825) 2022-02-11 10:45:21 +01:00
artoscinote cdbf1f5fa0
Implement stock management activities [SCI-6452] (#3810) 
* Implement stock management activities [SCI-6452]

* PR code fixes [SCI-6452]
 2022-02-02 10:33:02 +01:00
Oleksii Kriuchykhin dd5f8c2793 Add stock management columns to snapshots [SCI-6448] 2022-01-28 13:19:37 +01:00
Martin Artnik abac837cd4 Merge branch 'develop' of github.com:biosistemika/scinote-web into features/repository-filters 2022-01-20 13:26:08 +01:00
artoscinote 95a36b6870
Implemented stock management modal [SCI-6417] (#3788) 
* Implement inventory stock management modal [SCI-6417]

* Add generalized validation mechanic, some bugfixes [SCI-6417]

* Fix permission check and method name in RepositoryStockValue [SCI-6417]
 2022-01-20 12:44:57 +01:00
aignatov-bio 01f1b5bd10
Add stock column type (#3786) 
* Add stock column type

* Create new stock column [SCI-6410]

* Small fixed for stock column [SCI-6410]

* Add stock column validations [SCI-6410]

Co-authored-by: Anton <anton@scinote.net>
 2022-01-18 13:17:05 +01:00
Oleksii Kriuchykhin a4d84e1a3b Add initial implementation of inventory stock management [SCI-6402] 2022-01-12 17:13:50 +01:00
Oleksii Kriuchykhin 7aeeb81fb7 Update Ruby to 2.7.5, optimize Rails configuration, update Puma and Wkhtmltopdf [SCI-6403] 2022-01-07 11:20:11 +01:00
Oleksii Kriuchykhin a8ad7ef826 Add models and controller for repository table filters [SCI-6209] 2021-12-02 14:25:23 +01:00
Martin Artnik 8a78b8376b Make all except public project assignments manual [SCI-6292] 2021-11-23 10:56:28 +01:00
Anton a44dd8c915 Merge branch 'features/bmt-search' into features/repository-filters 2021-11-22 14:24:28 +01:00
Oleksii Kriuchykhin e8f55cb74f Fix user assignments migration, all assignments are automatic [SCI-6289] 2021-11-22 10:45:36 +01:00
Oleksii Kriuchykhin 2e92500a73 Fix seeds to work with new UserRoles, fix Templates creation job [SCI-6270] 2021-11-15 21:36:06 +01:00
artoscinote 0eacb91bed
Renamed 'group_user_role', fixed public project migration [SCI-6234] (#3642) 
* Renamed 'group_user_role', fixed public project migration [SCI-6234]

* Moved public project update inside loop [SCI-6234]
 2021-11-10 09:52:37 +01:00
Alex Kriuchykhin f11a4701d0
Merge pull request #3629 from artoscinote/ma_SCI_6193 
Added optional webhook secret key [SCI-6193]
 2021-11-08 21:00:40 +01:00
Oleksii Kriuchykhin 81bb0ba591 Refactor user roles migration [SCI-6222] 2021-11-08 14:27:08 +01:00
Martin Artnik 3406cd9235 Added optional webhook secret key [SCI-6193] 2021-11-03 15:04:13 +01:00
Oleksii Kriuchykhin a99599efea Merge branch 'features/new_permissions' into develop 2021-10-29 15:16:30 +02:00
artoscinote f267102e0b
Merge migrations as 'assigned' is needed in new user roles migration [SCI-6127] (#3583) 2021-10-08 15:15:21 +02:00
Martin Artnik c3932527d3 Fix and optimize user role migration [SCI-6127] 2021-10-07 12:21:35 +02:00
artoscinote 0fe6cd66e5
Fix permission migration, fix assignable scope [SCI-6127] (#3580) 2021-10-05 13:45:52 +02:00
artoscinote a18839f529
Automatically assign team admins as project owners [SCI_6119] (#3575) 2021-10-04 15:47:28 +02:00
Martin Artnik 31d77cc7c4 Don't delete user_projects yet! Needed for possible recovery actions. 2021-10-01 15:38:06 +02:00
Martin Artnik 49b9ee37cc Merge branch 'develop' into features/bmt-search 2021-09-24 11:01:27 +02:00
Oleksii Kriuchykhin e8e1ee3011 Prevent creation of duplicated repository cells [SCI-6036] 2021-09-09 14:24:35 +02:00
Martin Artnik ade1385392 Merge branch 'develop' into features/bmt-search 2021-09-06 10:51:04 +02:00
Martin Artnik 7e6ca3be8a Merge branch 'develop' into features/new_permissions 2021-09-06 10:33:32 +02:00
Miha Mencin 50d33896e3
Merge pull request #3480 from artoscinote/ma_SCI_5963 
Downcase all user emails, downcase when finding user [SCI-5963]
 2021-08-30 13:00:12 +02:00
Martin Artnik 896f0ce1e3 Implemented applying BMT filters [SCI-5980] 2021-08-30 10:49:15 +02:00
aignatov-bio b269f3f612 Add saved filters backend [SCI-5977] (#3509) 
* Add saved filters backend [SCI-5977]

* Rework filter saving [SCI-5977]

Co-authored-by: Martin Artnik <martin@scinote.net>
 2021-08-30 10:49:15 +02:00
artoscinote ef0e45be04 Implemented frontend for BMT-type repository [SCI-5991] (#3503) 
* Implemented frontend for BMT-type repository [SCI-5991]

* Refactor repository view, fix column reordering [SCI-5991]

* Remove type mapping for default columns in column management [SCI-5991]

* Repository table partial fix, remove non-relevant migration [SCI-5991]
 2021-08-30 10:49:15 +02:00
Oleksii Kriuchykhin 0b74f34de7 Add external IDs to repositories [SCI-5990] 2021-08-30 10:49:14 +02:00
Martin Artnik 57c6703f3c Fix default label template [SCI-6025] 2021-08-30 10:38:59 +02:00
Martin Artnik 289095ecbc Amended label template, truncate item name before print [SCI_6025] 2021-08-24 09:52:29 +02:00
Martin Artnik e0761f742e Fix printer template [SCI-5998] 2021-08-13 11:16:17 +02:00
Martin Artnik 5d5f406e9a Downcase all user emails, downcase when finding user [SCI-5963] 2021-08-11 13:18:58 +02:00
Martin Artnik 9db1078b42 Fix label template to work properly with FLUICS [ma_SCI_5975] 2021-08-10 14:54:33 +02:00
aignatov-bio 1565b4bbfb
Fix permission migration (#3465) 2021-08-05 10:10:35 +02:00
Martin Artnik 57d5e6c2a7 Merge branch 'develop' into features/barcodes 2021-08-03 13:36:36 +02:00
Martin Artnik a82af505eb Merge branch 'develop' into features/webhooks 2021-08-02 16:22:52 +02:00
Martin Artnik 123e415a4f Print status backend + FE integration [SCI-5942] 2021-08-02 15:42:53 +02:00
Martin Artnik 0f417f9730 Merge branch 'develop' into features/barcodes 2021-07-29 13:32:17 +02:00
Martin Artnik 67f4e81a3a Merge branch 'develop' into features/new_permissions 2021-07-28 15:16:47 +02:00
Martin Artnik b32b207f3d Added FLUICS API client [SCI-5939] 2021-07-23 13:52:28 +02:00
Martin Artnik 662370d2bd Removed auto-disable, fixed ActiveJob + DelayedJob retry handling [SCI-5800] 2021-07-22 13:43:36 +02:00
Martin Artnik 4bb080c25b Merge migrations, code fixes [SCI-5800] 2021-07-22 10:51:03 +02:00
Martin Artnik 026bc1eaae Fixed migration [SCI-5902] 2021-07-20 09:35:39 +02:00
artoscinote 5f9c04844f
Added prefixed IDs to repository rows (items) [SCI-5909] (#3441) 
* Added prefixed IDs to repository rows (items) [SCI-5909]

* Fix prefixed id queries to work with joins, use subquery in repository search [SCI-5909]

* Fixed accessing repository_row parent code [SCI-5909]

* Better handling of repository_row code display [SCI-5909]

* Fix index warning for id prefixed models issue setting up project [SCI-5909]
 2021-07-19 14:23:36 +02:00
Martin Artnik a8f8ab8ba9 Implement label templates with default ZPL template [SCI-5902] 2021-07-19 09:44:14 +02:00
Oleksii Kriuchykhin d1208bad0b Merge branch 'develop' into features/new_permissions 2021-07-07 13:44:36 +02:00
Martin Artnik 524ea05873 Fix migration rollback [SCI-5828] 2021-06-30 10:37:11 +02:00
Martin Artnik 3e1f0fe109 Migration code style fix [SCI-5828] 2021-06-30 10:28:55 +02:00
Martin Artnik e1b0b65465 Improved code style, fixed bug [SCI-5828] 2021-06-29 15:57:23 +02:00
zmagoD 9c812e84bd setup logic to group assign all team members and handle the unassignments logic 2021-06-27 13:22:19 +02:00
Martin Artnik d67d53b926 Code style fixes 2021-06-22 13:27:03 +02:00
Martin Artnik eaa713f5b8 Fix indices [SCI-5829] 2021-06-22 12:51:25 +02:00
Martin Artnik a9d6c4bb94 Code style fixes [SCI-5828] 2021-06-18 14:19:35 +02:00
Martin Artnik 29ff910eba Added searching experiments by EX[ID] [SCI-5829] 2021-06-18 14:12:59 +02:00
Martin Artnik c6648111f3 Code style fixes [SCI-5800] 2021-06-17 22:00:13 +02:00
Martin Artnik 47071e23a1 Added specs for webhooks 2021-06-17 14:54:30 +02:00
Martin Artnik 4ee50f87d5 Implement webhook service and scheduling jobs [SCI-5801, SCI-5802] 2021-06-17 09:19:04 +02:00
zmagoD 8997ba10d1 mark user assigmetns when they are created manually or automatically 2021-06-12 09:36:41 +02:00
aignatov-bio afe2a19c88
Add webhooks management [SCI-5767] (#3376) 
* Add webhooks managment [SCI-5767]

* Markup fixes [SCI-5676]
 2021-06-09 12:53:11 +02:00
aignatov-bio 16f83a3e60 Remove docx preview processing flag [SCI-5601] 2021-06-09 10:58:27 +02:00
aignatov-bio bf781c2ca4 Small fixes [SCI-5765] 2021-06-01 10:58:05 +02:00
aignatov-bio 3c7592657c Add activity filters [SCI-5765] 2021-05-31 13:39:10 +02:00
aignatov-bio 2be59bf8b2 Add pdf preview for docx reports [SCI-5601] 2021-05-25 15:14:50 +02:00
Oleksii Kriuchykhin 29c83ffbb1 Merge branch 'develop' into features/new-reports 2021-05-21 11:04:17 +02:00
Oleksii Kriuchykhin a175e83a16 Add generation error states to reports [SCI-5702] 2021-05-11 14:52:02 +02:00
zmagoD c0eb38b564 Merge branch 'develop' of https://github.com/biosistemika/scinote-web into features/new_permissions 2021-05-08 10:33:43 +02:00
Oleksii Kriuchykhin b67f2a21f5 Add default settings to existing reports [SCI-5619][SCI-5672] 2021-05-06 17:33:58 +02:00
miha 4c29de62be [SCI-5635] Use update_column in the migration in order to avoid callbacks 2021-04-13 10:28:41 +02:00
miha b6a4a5326f replace .find with .find_each 2021-04-12 13:57:03 +02:00
miha 56ebc3dc07 [SCI-5635] add a migration to fix broken steps, fix the api so it sets last_modified_by_id, minor step model refactor 
migration fix

remove the conditoin for set_last_modified_by callback

set the last_modified_by_id in before_save callback (in case it is not set yet)

remove trailing spaces

Set last modified in protocl import service
 2021-04-12 09:59:00 +02:00
Oleksii Kriuchykhin 67302da968 Add settings to reports [SCI-5612] 2021-04-08 17:40:16 +02:00
Oleksii Kriuchykhin a9ac8452f2 Add dynamic form elements in report wizard step 1 [SCI-5591] 2021-04-06 13:56:24 +02:00
Oleksii Kriuchykhin d006b813b9 Add pdf and docx attachments to reports [SCI-5558] 2021-03-15 13:30:03 +01:00
aignatov-bio df4297f6f7 Merge branch 'develop' into features/local_file_previews 2021-03-08 11:30:47 +01:00