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Author SHA1 Message Date
Matej Zrimšek 9ef04a6a2b Set strict version for rubocop gem, because the new one is not compatible with the previously used one. Also updated it to the newest version. 2018-01-16 17:01:44 +01:00
Oleksii Kriuchykhin b98241ef61 Fix bootstrap select dropdown [SCI-1895][SCI-1896] 2017-12-22 09:52:00 +01:00
Luka Murn 704bd31fef Set wicked_pdf version to ~> 1.0.6 2017-12-20 10:53:53 +01:00
Oleksii Kriuchykhin 1a81a99ff0 Remove Creek XLSX parser gem as it causes conflicts [SCI-1891] 2017-12-19 16:17:11 +01:00
Luka Murn cf291bf887 Merge branch 'gilson-iot-rails4' 
Conflicts:
	Gemfile.lock
 2017-12-19 10:56:39 +01:00
Oleksii Kriuchykhin 9408b29768 Update Rails version to 4.2.10 [SCI-1845] 2017-11-29 16:49:50 +01:00
zmagod 930e3a86dc Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1762 2017-11-23 13:56:17 +01:00
Luka Murn c51a85a161
Merge pull request #888 from biosistemika/lm-sci-1795 
Setup main architecture for permissions refactoring [SCI-1795]
 2017-11-23 12:32:49 +01:00
Zmago Devetak 2f66c1df25
adds travis config file (#873) 
* adds travis config file

* add dist to travis

* adds script section

* test env

* remove globals

* adds hashed variables

* add matrix

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* update Gemfile

* test travis

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* build with docker

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* ads

* add devise secre

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* adds travis db configurations

* make travis happy

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* testing devise

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 2017-11-23 09:55:57 +01:00
zmagod 70db34090d fixes rspec tests 2017-11-20 09:41:14 +01:00
Luka Murn ccef5571f1 Add dependency to Canaid, the permission helper library 2017-11-16 15:49:13 +01:00
Oleksii Kriuchykhin 84f4aba213 Pull latest master into gilson-iot-rails4 2017-11-15 15:15:26 +01:00
zmagod 327e27e123 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1576 2017-11-09 15:55:10 +01:00
zmagod 9eac014f1a Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1731 2017-11-09 09:05:22 +01:00
zmagod b036452d8c adds background worker to cucumber tests 2017-11-08 11:59:01 +01:00
mlorb 1c3c822796 change drivers for browser 2017-11-06 14:26:01 +01:00
zmagod e0323a0a46 fixes failing tests 2017-10-27 09:35:39 +02:00
zmagod 3d22a5404d add scenic gem, teams datatables sql view 2017-10-26 16:59:00 +02:00
zmagod 4de335d189 add whacamole configuration [fixes SCI-1683] 2017-10-25 09:47:26 +02:00
Luka Murn 82f982e983 Merge branch 'rails-5.1' into decoupling-settings-page 
Conflicts:
	Gemfile
	Gemfile.lock
 2017-10-23 10:59:10 +02:00
Luka Murn e740e586e8 Additional fixes required by latest merge from master (nr. 2) 2017-10-23 10:43:32 +02:00
Luka Murn 8254153bb9 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile
	Gemfile.lock
	app/models/connection.rb
	app/models/experiment.rb
	app/models/my_module.rb
 2017-10-23 08:57:57 +02:00
okriuchykhin 8e90e041b9 Merge pull request #825 from okriuchykhin/ok_SCI_1665 
Optimize memory usage in samples/repositories import [SCI-1665]
 2017-10-17 17:26:00 +02:00
Oleksii Kriuchykhin c8d2ae70fa Move duplicated code to service [SCI-1665] 2017-10-17 14:46:16 +02:00
Oleksii Kriuchykhin 56f52ebfa7 Optimize memory usage in samples/repositories import [SCI-1665] 2017-10-12 14:43:25 +02:00
zmagod dccf4e34ff fix cucumber settings 2017-10-12 13:50:48 +02:00
mlorb c358f8fa0c write unit tests for invite users 2017-09-28 14:49:33 +02:00
Oleksii Kriuchykhin faaa016267 Update AWS SDK v2 [SCI-1623] 2017-09-26 13:41:53 +02:00
mlorb 48c8922604 adds invite users modal 2017-09-21 10:45:35 +02:00
Luka Murn e078ae4f77 Merge branch 'rails-5.1' into decoupling-settings-page 2017-09-21 08:36:09 +02:00
Luka Murn beae1b05d8 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile
	Gemfile.lock
 2017-09-21 08:27:38 +02:00
Luka Murn 8463c89386 Update Gemfile 2017-09-01 09:36:40 +02:00
Oleksii Kriuchykhin c3fceb90df Backport API to Rails-4 [SCI-1579] 2017-08-30 13:30:41 +02:00
zmagod ee054f91b8 adds bullet gem [fixes SCI-1578] 2017-08-30 09:29:45 +02:00
Luka Murn b6eb46471a Merge pull request #753 from Ducz0r/lm-remove-some-code 
Remove some code we're no longer maintaining
 2017-08-22 14:04:04 +02:00
Luka Murn 90188c89c9 Update delayed_paperclip library 
Closes SCI-1376.
 2017-08-22 08:34:58 +02:00
zmagod c5e32c4ea0 Merge branch 'rails-5.1' of https://github.com/biosistemika/scinote-web into merge-rails-5.1-branch 2017-08-21 09:52:14 +02:00
Luka Murn 13eae287bb Revert "Add core API using JWT authentication and tests for it [SCI-1507]" 2017-08-07 11:54:45 +02:00
Luka Murn ae5bccf709 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile.lock
	app/datatables/repository_datatable.rb
	app/models/repository_cell.rb
 2017-08-07 08:45:53 +02:00
Oleksii Kriuchykhin e958410261 Add core API using JWT authentication and tests for it [SCI-1507] 2017-08-03 17:00:14 +02:00
zmagod 6ef19725f1 adds redux 2017-08-02 17:27:05 +02:00
Luka Murn 03a7440136 Remove SkyLight stuff (we're not using it any more) 2017-07-27 14:26:44 +02:00
zmagod 416ab8eee3 Merge branch 'rails-5.1' of https://github.com/biosistemika/scinote-web into zd_SCI_1400 2017-07-26 16:20:09 +02:00
Oleksii Kriuchykhin 6c33b46f6a Improve import of repository records plus tsv file import fixes [SCI-1487] 2017-07-20 11:44:10 +02:00
Oleksii Kriuchykhin ece27b2652 Fix importing files with empty header cells and error messages improvements [SCI-1484] 2017-07-18 14:54:35 +02:00
Oleksii Kriuchykhin b8e93ee883 Add Webpacker and React [SCI-1461] 2017-07-12 16:41:55 +02:00
zmagod 6636190442 removes unneeded gems, adds validation test to models 2017-07-06 17:37:29 +02:00
zmagod 234ca71f0a removes unneded gems, fixes hound 2017-07-06 09:45:59 +02:00
zmagod 750c82a80f setup testing tools [fixes SCI-1400] 2017-07-06 09:07:05 +02:00
zmagod bc33883c3c first run fixing addons 2017-06-30 10:23:28 +02:00
zmagod 71aa05bb0e refactor 2017-06-27 14:58:49 +02:00
zmagod 819f47b450 setup sciNote for Rails 5.1 2017-06-23 15:19:08 +02:00
zmagod 1b21f073d7 Rails 5.1.1 2017-06-23 10:34:46 +02:00
zmagod 909a114418 Rails 5.0.0.rc2 2017-06-23 10:08:54 +02:00
zmagod 75507107fd migrate to 4.2.9 2017-06-23 08:50:12 +02:00
Paul Menzel 24b97637b4 Gemfile: Use HTTPS protocol for sneaky-save 
Address the Bundler warning below.

```
Step 6/14 : RUN bundle install
 ---> Running in bfbfa83e61de
The git source `git://github.com/einzige/sneaky-save.git` uses the `git` protocol, which transmits data without encryption. Disable this warning with `bundle config git.allow_insecure true`, or switch to the `https` protocol to keep your data secure.
Your Ruby version is 2.3.4, but your Gemfile specified 2.3.3
The command '/bin/sh -c bundle install' returned a non-zero code: 18
```
 2017-06-07 11:47:16 +02:00
zmagod 10db322307 fixes input sanitize method [fixes SCI-1248] 2017-05-10 14:57:11 +02:00
zmagod 5b58824ec0 refactor 2017-05-03 15:30:08 +02:00
zmagod 550f563666 working version for steps first run 2017-04-21 16:09:04 +02:00
zmagod c25df63a14 add tinymce img importer and refactor input sanitize helper 2017-04-19 09:11:52 +02:00
Zmago Devetak 9c31239318 Merge pull request #552 from biosistemika/release-1.9.0 
Release 1.9.1
 2017-04-12 13:08:37 +02:00
Luka Murn e656101c47 Revert Wicked PDF Gem version 2017-04-12 09:27:31 +02:00
Luka Murn a30c7a77e8 Silence Wicked PDF generation 
Closes SCI-1107.
 2017-04-10 14:00:31 +02:00
zmagod 9a17648eee Adds new relic in sciNote [fixes SCI-1183] 2017-04-07 11:23:45 +02:00
Oleksii Kriuchykhin a7be37ef67 Add docker files for running in production mode [SCI-1096] 2017-03-27 14:36:20 +02:00
Luka Murn ee65e46fc7 Remove 'nokogiri' Gem being included twice 2017-03-22 10:37:11 +01:00
zmagod 0c2523beca Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-03-10 16:21:43 +01:00
Luka Murn 53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
Oleksii Kriuchykhin 1abd7fc574 Added xml schemas and zip gem [SCI-742] 2017-01-23 17:34:02 +01:00
zmagod 65fa631b1c adding tinyMce first run 2017-01-18 22:40:08 +01:00
Luka Murn cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
Luka Murn eb64162633 Remove Gem dependency, add atwho as regular vendor/js 2017-01-05 12:06:59 +01:00
Luka Murn 23e60e0d01 Add Gems for smart annotations (atwho) 2017-01-04 10:51:55 +01:00
zmagod a434649f42 Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-01-03 16:35:25 +01:00
Zmago Devetak c8631077df Merge pull request #361 from biosistemika/improved-sample-table 
Improved sample table
 2016-12-16 15:37:54 +01:00
zmagod 62e4d32221 updated gemfile 2016-12-16 10:45:14 +01:00
zmagod ac52e643be cleanup direct upload 2016-12-08 11:26:13 +01:00
Zmago Devetak 91f29745c4 Merge pull request #314 from ZmagoD/zd_SCI_643 
adds autolink
 2016-12-05 10:47:23 +01:00
Matej Zrimšek 46465060d0 Added automatic sign in with token authentication, needed when signing in from different webpage. [closes SCI-689] 2016-11-30 16:56:56 +01:00
Luka Murn 76ec77fce4 Merge pull request #329 from biosistemika/simplify-signup 
Merge simplify-signup into master
 2016-11-30 09:41:20 +01:00
Luka Murn de7c0ad641 Remove commit reference to quill-rails in Gemfile 2016-11-24 09:19:43 +01:00
zmagod fafecce264 adds autolink to comments, tast desc., step desc., experiment desc., samples table 'only custom fields', checklists [fixes SCI-643] 2016-11-23 14:18:50 +01:00
Mojca Lorber 60f23b109b integrate reCaptcha into sciNote 2016-11-22 14:57:41 +01:00
Luka Murn 26d04b1f3c Merge branch 'rich-text-formatting' into 'master' 
Conflicts:
	Gemfile.lock
	app/assets/stylesheets/themes/scinote.scss
 2016-11-17 16:39:33 +01:00
Luka Murn d1701bd7ae Merge pull request #276 from Ducz0r/lm-sci-637 
Automatically resize textarea elements [SCI-637]
 2016-11-17 09:58:36 +01:00
Luka Murn 8302a87671 Update Gemfile 2016-11-16 10:07:18 +01:00
Luka Murn fa6d8d3020 Save first time tutorial Activity-s without callbacks 
This PR adds a new, pretty useful little gem called sneaky-save.
Closes SCI-655
 2016-11-14 15:55:44 +01:00
Zmago Devetak a5637a65a0 Merge pull request #274 from ZmagoD/zd_SCI_639 
Customize the library SCI-639
 2016-11-11 12:15:23 +01:00
Luka Murn 55f9633d1d Add jQuery.autosize plugin 2016-11-11 09:09:41 +01:00
zmagod df43614f00 swithced quill gem to master branch 2016-11-10 14:15:39 +01:00
Mojca Lorber 3e162b3a93 remove redcarpet gem - markdown 2016-11-10 14:11:32 +01:00
zmagod 7c7106d8ff included updated guill-rails version [fixes SCI-639] 2016-11-10 14:04:22 +01:00
Mojca Lorber ab0879e8d6 Integrate library with default settings 2016-11-09 13:09:53 +01:00
Luka Murn 02d3e03f75 Bugfix for notification emails 
The URLs in notification emails didn't get server URL prepended,
so users could not click on them.
 2016-10-13 12:12:28 +02:00
Luka Murn 448daab7c8 Merge pull request #207 from biosistemika/add-deface-hotfix 
Merge hotfix 1.3.1 into master
 2016-10-07 18:26:13 +02:00
zmagod 32f03ec94c Add Deface hooks 2016-10-06 16:47:36 +02:00
Matej Zrimšek 5d5681bffe Added code semantic and style checking for JS, ERB, and SCSS files. JS, ERB and RUBY checkers were also bound to Hound. 2016-10-05 14:28:34 +02:00
Jure Grabnar b51f2a3027 Add basic WOPI proof checking 
Still missing validation of timestamp.
Remove web_console gem for testing.
Add relevant tests from manual for WOPI proof.
 2016-09-28 09:33:44 +02:00
Nejc Bernot b2b1d5a8f5 Initial commit of WOPI integration 2016-09-28 09:33:44 +02:00
Matej Zrimšek c6a23aab98 Added missing validations for text fields. Added text trimming, which removes spaces from beginning and ending of text. [fixes SCI-408] 2016-09-21 19:37:36 +02:00
Matej Zrimšek 84693bfbf7 Added gem for smart code searching 2016-09-13 18:53:54 +02:00
zmagod ca0ba1403d set flask icon to experiment [fixes SCI-330] 2016-08-17 14:17:29 +02:00
zmagod 1a56396eb5 add workflow image to project overview page [fixes SCI-41] 2016-08-08 16:02:17 +02:00
Jure Grabnar b402d67f24 Add rubocop gem to development env 2016-08-03 12:52:51 +02:00
zmagod 0955d1c66a 1. Fixed fixtures 
2. Added shoulda matcher gem
3. Added Experiment test suite
4. Fixed failing tests
 2016-07-27 10:49:13 +02:00
Luka Murn 076b67620f Migration GitLab -> GitHub 2016-07-21 13:11:15 +02:00
Luka Murn 055298fee8 Initial commit. 2016-02-12 16:52:43 +01:00