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13340 commits 31 branches 181 tags 166 MiB
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1051 commits

Author SHA1 Message Date
Luka Murn
84df2c81f9 Merge branch 'features/export-all' 
Conflicts:
	app/controllers/experiments_controller.rb
	app/controllers/my_modules_controller.rb
	db/schema.rb
 2018-11-13 09:14:02 +01:00
Oleksii Kriuchykhin
145c66a834 Fix user counters on projects overview page [SCI-2847] 2018-11-12 11:52:38 +01:00
Oleksii Kriuchykhin
8d0dbc7076 Add time format selection to settings [SCI-2778] 2018-11-09 16:19:40 +01:00
Oleksii Kriuchykhin
1feb13c74a Improve counters on projects overview table [SCI-2785] 2018-11-07 22:27:57 +01:00
Matej Zrimšek
8fe0249f45 Fix test for repository ZIP export & return path for ZIP exports [SCI-2646] 2018-11-07 05:04:29 +01:00
Alex Kriuchykhin
2b4ef619c2
Merge pull request #1345 from okriuchykhin/ok_SCI_2785 
Show all experiments and tasks for archived projects [SCI-2785]
 2018-10-29 11:56:38 +01:00
Oleksii Kriuchykhin
04ff5870af Rename user_id to sub in JWT [SCI-2814] 2018-10-28 14:34:51 +01:00
Oleksii Kriuchykhin
e9a8826a1e Show all experiments and tasks for archived projects [SCI-2785] 2018-10-24 18:49:59 +02:00
Matej Zrimšek
c8d170f9ec Add default page size when it's not in request params when fetching projects 2018-10-23 19:51:50 +02:00
Oleksii Kriuchykhin
02f536cd08 Merge latest features/export-all [SCI-2733] 2018-10-16 17:20:19 +02:00
Jure Grabnar
26df1e5a98 Add export project modal 
Closes [SCI-2645]
 2018-10-16 11:00:38 +02:00
Matej Zrimšek
1bf16537f6 Add PDF content to the export all ZIP [SCI-2641] 2018-10-14 23:56:10 +02:00
Oleksii Kriuchykhin
f221d71bbc Fix datatables state restore [SCI-2733] 2018-10-12 15:15:43 +02:00
Oleksii Kriuchykhin
8cf59d8d22 Add request rate throttling for API [SCI-2770] 2018-10-11 09:48:06 +02:00
Oleksii Kriuchykhin
af02f29fb5 Implement user state saving for projects overview [SCI-2733] 2018-10-10 16:15:31 +02:00
Alex Kriuchykhin
16b29b50a5
Merge pull request #1321 from okriuchykhin/ok_SCI_2731 
Add Projects view - list/table view [SCI-2731]
 2018-10-08 17:53:35 +02:00
Jure Grabnar
d7c875135e
Merge pull request #1304 from jbargu/jg_zipfile_structure 
Create zipfile structure for export all, implement inventory CSV for export [SCI-2640] [SCI-2642] [SCI-2643] [SCI-2644]
 2018-10-05 15:36:56 +02:00
Oleksii Kriuchykhin
492a5de19e Add Projects view - list/table view [SCI-2731] 2018-10-01 15:39:42 +02:00
Jure Grabnar
553ac4c360 Refactor code according to PR review 
PR review: https://github.com/biosistemika/scinote-web/pull/1304

Closes: [SCI-2640], [SCI-2642], [SCI-2643], [SCI-2644].
 2018-09-30 16:37:18 +02:00
Oleksii Kriuchykhin
2508394924 Refactor Projects view - cards view [SCI-2730] 2018-09-27 10:43:44 +02:00
Jure Grabnar
a3d7d37081 Format according to Hound bot #2 2018-09-23 11:30:20 +02:00
Jure Grabnar
64a6ed7ffe Format according to houndbot 2018-09-23 11:14:59 +02:00
Oleksii Kriuchykhin
7f7ece2be0 Improve delayed jobs for TempFile deletion and Asset text extraction [SCI-2738] 2018-09-21 17:46:18 +02:00
Oleksii Kriuchykhin
84428b37c2 Add project view JSON endpoints [SCI-2728] 2018-09-21 10:39:20 +02:00
Jure Grabnar
d783c34d33 Clean some minor artefacts 2018-09-16 23:52:36 +02:00
Jure Grabnar
f8b1db7f72 Fix repository export and relative hyperlinks 2018-09-16 23:01:44 +02:00
Jure Grabnar
449aa12070 Refactor TeamZipExport code (move it into special file) 2018-09-16 20:28:26 +02:00
Oleksii Kriuchykhin
49e788a9ad Mergre latest core-api [SCI-2515] 2018-09-14 10:24:05 +02:00
Oleksii Kriuchykhin
c8abb3d9b8 Add user_identities CRUD endpoints, make API V1 togglable [SCI-2664][SCI-2686] 2018-08-24 15:27:59 +02:00
Oleksii Kriuchykhin
0322316d74 Make API V1 togglable [SCI-2686] 2018-08-24 12:11:28 +02:00
Jure Grabnar
295c6a9432 Add export all functionality (basic skeleton) 2018-08-21 21:07:45 +02:00
Oleksii Kriuchykhin
ecde634a2c Add OAuth2 provider [SCI-2515] 2018-08-17 13:17:59 +02:00
Alex Kriuchykhin
422baaf64a
Merge pull request #1258 from okriuchykhin/ok_SCI_2619 
Add team deletion service [SCI-2619]
 2018-08-17 10:56:11 +02:00
Oleksii Kriuchykhin
ca6fc84ae2 Remove duplicated task outputs deletion [SCI-2619] 2018-08-10 16:43:40 +02:00
Alex Kriuchykhin
6004f8411b
Merge pull request #1260 from okriuchykhin/ok_SCI_2611 
Add GET teams and team API endpoints [SCI-2611][SCI-2612]
 2018-08-08 16:59:42 +02:00
Oleksii Kriuchykhin
298b866df4 Fix failing tests [SCI-2611][SCI-2612] 2018-08-07 14:58:02 +02:00
okriuchykhin
dd9090efef
Merge pull request #1253 from okriuchykhin/ok_SCI_2608 
Adds API authentication with Azure AD [SCI-2608]
 2018-08-02 11:28:18 +02:00
Oleksii Kriuchykhin
bc1cd39229 Add team deletion service [SCI-2619] 2018-07-27 13:34:13 +02:00
Oleksii Kriuchykhin
0e372af729 Adds API authentication with Azure AD [SCI-2608] 2018-07-24 14:21:33 +02:00
Oleksii Kriuchykhin
3e7fc6720c Fix team import service 2018-07-20 16:10:45 +02:00
Luka Murn
f67b8d05c7
Merge pull request #1225 from okriuchykhin/ok_SCI_2534 
Fix rendering permissions of inventory annotations [SCI-2534]
 2018-07-13 15:18:59 +02:00
Zmago Devetak
00ed339520
Merge pull request #1233 from ZmagoD/zd_SCI_2589 
fixes bug with xslx files with numeric values [fixes SCI-2589]
 2018-07-06 11:08:27 +02:00
zmagod
c0d276ebee fixes bug with xslx files with numeric values [fixes SCI-2589] 2018-07-05 14:08:03 +02:00
Oleksii Kriuchykhin
42ce72170c Fix inventory cell copy with file attached [SCI-2585] 2018-07-02 12:58:49 +02:00
Oleksii Kriuchykhin
6660b240c8 Fix rendering permissions of inventory annotations [SCI-2534] 2018-06-28 15:30:32 +02:00
Zmago Devetak
54a17e0574
Merge pull request #1209 from ZmagoD/zd_SCI_2165 
Update team migration script to support "list of values" and "file" repository columns/cells [fixes SCI-2165]
 2018-06-27 15:31:27 +02:00
Zmago Devetak
29c379dbae
add rep_item to update_annotation function 2018-06-27 15:17:02 +02:00
zmagod
db1944cc90 move maximum file size limit to an ENV variable [fixes SCI-2415] 2018-06-19 14:15:14 +02:00
zmagod
d68ae63c40 adds repository_items to smart annotation import 2018-06-19 11:58:22 +02:00
zmagod
fbcc788597 fixes per @duczOr request 2018-06-18 14:00:49 +02:00
zmagod
3d7591100a adds repository row assets to team import/export [fixes SCI-2165] 2018-06-14 15:20:57 +02:00
zmagod
4a82d1e7ac fixes repository items import 2018-06-14 14:40:43 +02:00
zmagod
f2c0b3aa92 removes samples, adds list_items 2018-06-13 12:45:48 +02:00
zmagod
9abf50e7c5 Limits the max. amount of rows when importing into inventories [fixes SCI-2468] 2018-05-31 10:45:31 +02:00
zmagod
c683cfdbd7 triggers the delayed job in the controller action, fixes smart annotations 2018-05-25 11:41:43 +02:00
zmagod
e019767e90 refactor save_pdf_to_inventory_item service 2018-05-17 13:17:19 +02:00
zmagod
b125863baf Merge branch 'ux-release-1' of https://github.com/biosistemika/scinote-web into zd_SCI_2371 2018-05-17 11:25:33 +02:00
zmagod
ca0c8cbb71 fixes typos, fixes pdf rendering 2018-05-17 11:21:34 +02:00
Zmago Devetak
8a92f1a499
Merge pull request #1127 from ZmagoD/zd_SCI_2307_v3 
Adds custom method that generates smart annotations name for repository
 2018-05-16 13:23:25 +02:00
zmagod
4573655ec8 adds save PDF report to inventory feature [fixes SCI-2371] 2018-05-16 09:31:19 +02:00
Luka Murn
63b7b937bb Fix a bug with table order not updating properly with col deletion 2018-05-15 20:44:15 +02:00
zmagod
3e10ff7fc5 add custom method that generates smart annotations name from repository name [fixes SCI-2307] 2018-05-04 10:44:23 +02:00
Zmago Devetak
9ce071693d
Merge pull request #1116 from ZmagoD/zd_SCI_2310 
parse smart annotations in repository export [fixes SCI-2310]
 2018-05-03 14:34:29 +02:00
Zmago Devetak
4fe4fea4fc
Merge pull request #1122 from ZmagoD/zd_SCI_2339 
repository when sorting/searching bug fix [SCI-2339]
 2018-05-03 12:05:39 +02:00
Luka Murn
cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
zmagod
23f8f35a2c a shotgun surgery that fixes searching/filtering of repository_rows [fixes SCI-2339] 2018-04-26 11:05:02 +02:00
Luka Murn
cd04596c62
Merge pull request #1111 from Ducz0r/lm-sci-2276-fix 
Update the code for repository table states so it (hopefully) causes less errors [SCI-2276]
 2018-04-25 12:37:27 +02:00
zmagod
7d26ce561c parse smart annotations in repository export [fixes SCI-2310] 2018-04-24 14:53:49 +02:00
zmagod
efd1e470f6 rename smart annotations icons [fixes SCI-2307] 2018-04-23 12:38:54 +02:00
Luka Murn
c0da83c5de Add some additional nil guards 2018-04-20 12:31:22 +02:00
Luka Murn
d023db16af Update the destroy_column action so it properly updates all states 2018-04-20 12:31:22 +02:00
Luka Murn
21e7e7057e Refactor all the methods into two new services 2018-04-20 12:31:22 +02:00
Luka Murn
5e2622ecfc Change default repository state to Ruby representation 
Also remove some dead code from repositories datatables
 2018-04-20 12:31:22 +02:00
Zmago Devetak
6b4d786acc
Merge pull request #1105 from ZmagoD/zd_SCI_2307 
change repository icon
 2018-04-19 17:58:48 +02:00
zmagod
bb3e1b4dcf change repository icon 2018-04-19 15:39:24 +02:00
zmagod
f3af8f4524 switch current_team to repository.team 2018-04-19 13:04:16 +02:00
zmagod
9baaad25b6 add current_user to cloned created_by, last_modified_by field 2018-04-16 12:38:25 +02:00
zmagod
4f21833373 changes per @duco 's request 2018-04-13 11:47:33 +02:00
zmagod
6291857bbf enables copying of repository items [fixes SCI-2207] 2018-04-11 17:17:19 +02:00
zmagod
b51ad84ee5 add asset field preview/sort/search in repository table [fixes SCI-2076] 2018-04-06 12:03:39 +02:00
Zmago Devetak
d1f3a65279
Merge pull request #1073 from ZmagoD/zd_SCI_2206 
add ID column to repository [fixes SCI-2206]
 2018-04-04 15:39:59 +02:00
zmagod
e630d3113f add ID column to repository [fixes SCI-2206] 2018-04-04 11:55:11 +02:00
zmagod
8a156ad91e change method name 2018-04-03 13:05:25 +02:00
zmagod
7dfec94ffc remove samples from smart annotations 2018-04-03 09:43:12 +02:00
zmagod
01a548e8b3 fix hound 2018-03-29 16:11:21 +02:00
zmagod
659a088058 refactor smart annotation parser, adds repository item to smart annotation parser [fixes SCI-2222] 2018-03-29 15:55:26 +02:00
okriuchykhin
13fed0411b
Merge pull request #1063 from biosistemika/release-1.12.11 
merge release 1.12.11 branch to master
 2018-03-27 16:19:57 +02:00
zmagod
064bd88584 fix assigned query 2018-03-19 17:49:09 +01:00
zmagod
fad4001273 fix edit row action 2018-03-16 12:27:19 +01:00
zmagod
1cdba5e0d3 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2068 2018-03-16 11:05:16 +01:00
okriuchykhin
503617b42c
Merge branch 'samples_to_repositories_table_migration' into zd_SCI_2025 2018-03-13 14:44:20 +01:00
okriuchykhin
f14931f6a8
Update with latest changes on branch 2018-03-13 14:37:12 +01:00
okriuchykhin
262c21d145
Merge pull request #1036 from okriuchykhin/ok_SCI_2078 
Implement importable selector for repository columns [SCI-2078]
 2018-03-13 13:14:53 +01:00
Oleksii Kriuchykhin
be1ead22e0 Implement importable selector for repository columns [SCI-2078] 2018-03-13 11:36:05 +01:00
Oleksii Kriuchykhin
f5ecbecaf3 Fix bugs [SCI-1849] 2018-03-12 17:00:44 +01:00
Oleksii Kriuchykhin
60e3a836be Fix typo in regex [SCI-1849] 2018-03-11 22:11:12 +01:00
Oleksii Kriuchykhin
ac009a29cb Add annotations migrations and optimize queries [SCI-2016] 2018-03-11 22:06:44 +01:00
zmagod
22eb4121f0 follow @okriuchykhin 's suggestions 2018-03-09 15:44:42 +01:00
zmagod
0baa7a1f99 fix hound 2018-03-09 14:43:12 +01:00
zmagod
4f951f6679 adds unit specs for datatable service [fixes SCI-2068] 2018-03-09 14:22:00 +01:00
zmagod
26883af386 fix assigned ordering 2018-03-08 17:36:10 +01:00
zmagod
fb66131e29 setup endpoint for repository_rows paging/search 2018-03-06 16:32:39 +01:00
Oleksii Kriuchykhin
c933030b94 Add team export/import scripts [SCI-1849] 2018-03-06 11:26:30 +01:00
zmagod
fca01bd54f refactor repository export [fixes SCI-2025] 2018-03-05 15:54:04 +01:00
zmagod
83db7ed01d adds rake task to migrate the samples in custom repositories and tests [fixes SCI-2014] 2018-02-26 17:21:58 +01:00
zmagod
5922aa21a8 adds fetch_all_team_samples method/spec 2018-02-15 17:38:45 +01:00
zmagod
c53df21946 adds specs for sample_to_repository migration service 2018-02-15 16:56:38 +01:00
zmagod
e0ac8e8f91 extract helper methods in service 2018-02-15 09:36:09 +01:00
zmagod
f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
Oleksii Kriuchykhin
2ddb0ea009 Improve XLSX parsing with Roo [SCI-1915] 2018-01-11 17:52:57 +01:00
Oleksii Kriuchykhin
1a81a99ff0 Remove Creek XLSX parser gem as it causes conflicts [SCI-1891] 2017-12-19 16:17:11 +01:00
Oleksii Kriuchykhin
baf3151bb0 Fix notification settings accessors [SCI-1864] 2017-12-13 11:59:53 +01:00
Oleksii Kriuchykhin
84f4aba213 Pull latest master into gilson-iot-rails4 2017-11-15 15:15:26 +01:00
zmagod
5bc38414d1 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1731 2017-11-03 09:56:44 +01:00
zmagod
e0323a0a46 fixes failing tests 2017-10-27 09:35:39 +02:00
zmagod
c36fcb1fa4 fixes user invitation button [fixes SCI-1726] 2017-10-25 11:31:32 +02:00
Luka Murn
c026b60790 Update Profile page to use validation 2017-10-23 18:04:20 +02:00
Luka Murn
82f982e983 Merge branch 'rails-5.1' into decoupling-settings-page 
Conflicts:
	Gemfile
	Gemfile.lock
 2017-10-23 10:59:10 +02:00
Oleksii Kriuchykhin
c8d2ae70fa Move duplicated code to service [SCI-1665] 2017-10-17 14:46:16 +02:00
zmagod
c5978f2d86 adds cucumber test for profile page [fixes SCI-1572] 2017-10-16 16:21:52 +02:00
Oleksii Kriuchykhin
56f52ebfa7 Optimize memory usage in samples/repositories import [SCI-1665] 2017-10-12 14:43:25 +02:00
zmagod
dea69014d0 fixes bug with password confirmation 2017-10-06 09:54:17 +02:00
zmagod
754627efe7 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1564 2017-10-05 11:08:31 +02:00
zmagod
f492234f89 fixes hound allerts 2017-09-28 17:00:11 +02:00
mlorb
c358f8fa0c write unit tests for invite users 2017-09-28 14:49:33 +02:00
zmagod
e2aa0d7515 fixes user profile 2017-09-26 17:29:11 +02:00
mlorb
4ef7b57f31 fix error handeling 2017-09-22 09:57:41 +02:00
mlorb
9d96bf668a fix error handeling, refactoring 2017-09-21 16:42:56 +02:00
mlorb
55772a80ab fix hound and refactor 2017-09-21 10:45:36 +02:00
mlorb
48c8922604 adds invite users modal 2017-09-21 10:45:35 +02:00
Luka Murn
5429f6bbbd Fix @ZmagoD's remarks 2017-09-21 08:06:11 +02:00
Luka Murn
44877a13a5 Refactor services on backend. New team page is now working 2017-09-19 16:32:21 +02:00
Luka Murn
80c05e50ec Semi-working version of create new team form 2017-09-19 16:30:26 +02:00
zmagod
1a00b53034 adds user_team tests 2017-09-14 13:11:19 +02:00
zmagod
705d07f60e adds remove team action 2017-09-13 17:11:51 +02:00
zmagod
1b3b3dfea9 adds team members update role functionality 2017-09-12 17:30:13 +02:00
zmagod
9c01ab414c refactor leave team 2017-09-01 17:10:43 +02:00
zmagod
91d2d8a935 adds team details view 2017-08-31 15:56:55 +02:00
zmagod
1325732b0c adds specs for team controller actions 2017-08-30 16:18:21 +02:00
Oleksii Kriuchykhin
c3fceb90df Backport API to Rails-4 [SCI-1579] 2017-08-30 13:30:41 +02:00
zmagod
ee054f91b8 adds bullet gem [fixes SCI-1578] 2017-08-30 09:29:45 +02:00
Luka Murn
13eae287bb Revert "Add core API using JWT authentication and tests for it [SCI-1507]" 2017-08-07 11:54:45 +02:00
Luka Murn
ae5bccf709 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile.lock
	app/datatables/repository_datatable.rb
	app/models/repository_cell.rb
 2017-08-07 08:45:53 +02:00
Oleksii Kriuchykhin
e958410261 Add core API using JWT authentication and tests for it [SCI-1507] 2017-08-03 17:00:14 +02:00
Oleksii Kriuchykhin
ece27b2652 Fix importing files with empty header cells and error messages improvements [SCI-1484] 2017-07-18 14:54:35 +02:00
zmagod
18fd5b00ba fix hound 2017-06-21 15:01:55 +02:00
zmagod
f66fb49b56 adds import records to repositories [fixes SCI-1336] 2017-06-21 14:45:50 +02:00
zmagod
f64e1ac713 fix locales 2017-06-21 09:31:39 +02:00
zmagod
70fa681519 split the import service 2017-06-19 14:05:37 +02:00
zmagod
cee052fc19 added service object 2017-06-14 09:11:20 +02:00
zmagod
a865253a2e first run 2017-06-13 08:10:10 +02:00