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306 commits

Author SHA1 Message Date
Oleksii Kriuchykhin
8b968f6f67 Fix selection of the default snapshot on tasks [SCI-4637] 2020-05-18 11:06:42 +02:00
aignatov-bio
f921ac75d8 Select correct button name for assign modal 2020-05-15 15:37:48 +02:00
aignatov-bio
bc81a48b00 Make snapshot creation info text switchable 2020-05-15 14:44:26 +02:00
aignatov-bio
69abccbbd6 Add title for full view assign modal 2020-05-15 14:22:20 +02:00
aignatov-bio
c9a9cd2e75 Remove search from state load in task repository 2020-05-14 21:49:01 +02:00
aignatov-bio
e49d2dfbae
Merge pull request #2546 from aignatov-bio/ai-sci-4605-some-inventories-task-corrections 
Small task inventories corrections [SCI-4605]
 2020-05-14 16:45:45 +02:00
aignatov-bio
ce1540aaa9 Small task inventories corrections 2020-05-14 16:41:02 +02:00
aignatov-bio
309f8c1a3d Small snapshots CSS corrections 2020-05-14 16:29:50 +02:00
aignatov-bio
78b4067c50
Merge pull request #2549 from aignatov-bio/ai-sci-4604-small-snapshot-corrections 
Small snapshot css corrections [SCI-4604]
 2020-05-14 15:18:13 +02:00
Miha Mencin
26caeed04f
increase pooling interval to 10s 2020-05-14 12:39:13 +02:00
Miha Mencin
0e5ce1054e decrease pooling time for snapshots 2020-05-14 12:03:07 +02:00
Alex Kriuchykhin
a341bd533b
Merge pull request #2557 from okriuchykhin/ok_SCI_4596 
Make snapshots selectable [SCI-4596]
 2020-05-14 10:15:44 +02:00
Oleksii Kriuchykhin
ba1661b40f Fix handling of deleted repositories for snapshots [SCI-4596] 2020-05-13 18:00:56 +02:00
Oleksii Kriuchykhin
c74fa3c244 Make snapshots selectable [SCI-4596] 2020-05-13 17:58:05 +02:00
Urban Rotnik
334da7c3ec Fix for assign view 2020-05-12 19:38:45 +02:00
aignatov-bio
f94ea51ecb Small snapshot css corrections 2020-05-10 13:08:19 +02:00
aignatov-bio
8e20dccc66
Merge pull request #2510 from aignatov-bio/ai-sci-4509-add-recent-protocols-tab 
Add recent protocol tab to load protocal from repository [SCI-4509]
 2020-05-08 13:17:26 +02:00
aignatov-bio
d2a479c2e8
Merge pull request #2526 from aignatov-bio/ai-sci-4559-add-assigned-tasks-dropdown-to-inventory 
Add assigned task dropdown to repository and task page [SCI-4559][SCI-4565]
 2020-05-08 12:39:28 +02:00
aignatov-bio
e9c54f10fb Fix markup 2020-05-08 11:58:40 +02:00
aignatov-bio
c9545ddb19 Merge branch 'features/new-task-layout' into ai-sci-4509-add-recent-protocols-tab 2020-05-08 10:28:33 +02:00
aignatov-bio
dad5ac7a27 Fix snapshot button place 2020-05-07 19:36:30 +02:00
aignatov-bio
fe658a9b23
Merge pull request #2534 from aignatov-bio/ai-sci-4594-refactor-css-for-full-view-repository-view 
Update CSS for full view assigned rows modal [SCI-4594]
 2020-05-07 15:22:06 +02:00
aignatov-bio
8ec7a4b7b4 Merge branch 'features/new-task-layout' into ai-sci-4559-add-assigned-tasks-dropdown-to-inventory 2020-05-07 13:03:00 +02:00
aignatov-bio
8b5872347a
Merge pull request #2514 from aignatov-bio/ai-sci-4538-new-protocol-template-dropdown 
Add new protocol template dropdown [SCI-4538]
 2020-05-07 08:32:54 +02:00
aignatov-bio
a29db548f8 Update CSS for full view assigned rows modal 2020-05-05 18:17:14 +02:00
Alex Kriuchykhin
7e9054e6d2
Merge pull request #2519 from aignatov-bio/ai-sci-4523-add-assign-items-to-task 
Add assign items modal and update modal for task inventories [SCI-4523][SCI-4524]
 2020-05-05 13:20:01 +02:00
aignatov-bio
1b57040c37 Fix deepscan issues 2020-05-05 09:44:38 +02:00
aignatov-bio
9d006aac9e Fix handson table for colapsed protocol section 2020-05-02 22:15:38 +02:00
aignatov-bio
1ed62c4a49 Fix I18n and save to repository button 2020-05-01 20:45:09 +02:00
aignatov-bio
19d30e2019 Merge branch 'features/new-task-layout' into ai-sci-4523-add-assign-items-to-task 2020-04-29 15:13:38 +02:00
aignatov-bio
b9c5089c2b Add search to assigned tasks dropdown 2020-04-28 12:41:59 +02:00
Oleksii Kriuchykhin
e6ad5047e0 Implement background processing of repository snapshots [SCI-4552] 2020-04-28 12:09:36 +02:00
aignatov-bio
ad705a740c Add new protocol template dropdown 2020-04-24 15:48:40 +02:00
aignatov-bio
f65b50c6ff Fix rebase conflicts 2020-04-23 16:36:22 +02:00
aignatov-bio
d48997464d Fix markup 2020-04-23 15:25:28 +02:00
aignatov-bio
34d6e903a4 Add assign items modal and update modal for task inventories 2020-04-23 15:24:40 +02:00
Oleksii Kriuchykhin
f811d11c59 Add versions sidebar to assigned repository rows full view modal [SCI-4525] 2020-04-21 14:49:36 +02:00
aignatov-bio
338f3a0192 Fix css 2020-04-14 13:08:07 +02:00
aignatov-bio
c1cac01b28 Add repositories dropdown list 2020-04-14 12:10:16 +02:00
aignatov-bio
fe718349da Add recent protocol tab to load protocal from repository 2020-04-09 17:29:39 +02:00
aignatov-bio
c9b59f96a8 Hide checkbox column for full view 2020-04-08 15:58:22 +02:00
aignatov-bio
e4b65aaf6f Finish full view repository 2020-04-08 15:13:21 +02:00
aignatov-bio
087f71a82f Add full view for my-module repository 2020-04-07 21:02:16 +02:00
aignatov-bio
9dfc652580 Fix markup 2020-04-07 12:50:58 +02:00
aignatov-bio
845e8c3d6d Fix loading process 2020-04-07 12:36:01 +02:00
aignatov-bio
7fdc169ba2 Add simple view to repository table 2020-04-06 19:52:41 +02:00
aignatov-bio
b188b0511b Refactor TinyMCE autosave check 2020-03-19 15:45:14 +01:00
Oleksii Kriuchykhin
49e1e67231 Fix JS condition [SCI-4321] 2020-02-07 15:54:57 +01:00
Oleksii Kriuchykhin
5470bb9b9b Fix file result only name update [SCI-4321] 2020-02-07 15:21:50 +01:00
Anton Ignatov
c389972e2a Fix JS error in recent protocol drop down 2019-09-24 09:47:04 +02:00
Anton Ignatov
146c725e89 Fix step table error 2019-09-18 11:47:33 +02:00
Oleksii Kriuchykhin
3509543e7b Merge branch 'master' into ok_SCI_3881 2019-09-16 11:56:49 +02:00
aignatov-bio
15dc25cee9
Fix handson table initialization [SCI-3749] (#2021) 
* Fix handson table initialization

* Fix markup
 2019-09-05 08:35:28 +02:00
aignatov-bio
b57e79a557
Fix tables (#1963) 2019-08-09 09:41:32 +02:00
Oleksii Kriuchykhin
a5d47e75c5 Remove duplicated protocols.js.erb file [SCI-3678] 2019-08-08 14:33:07 +02:00
Oleksii Kriuchykhin
973efa55e1 Merge branch 'master' into ok_SCI_3678 2019-08-08 11:17:07 +02:00
Oleksii Kriuchykhin
eaf9d59819 Merge branch 'activestorage_migration' into ok_SCI_3679 2019-08-06 15:27:31 +02:00
Oleksii Kriuchykhin
423528933e Switch to global JS constants [SCI-3679] 2019-08-06 15:06:19 +02:00
Oleksii Kriuchykhin
5e65b07bdc Implement DirectUpload for Steps, Results and Inventories [SCI-3679] 2019-07-25 18:00:24 +02:00
Anton Ignatov
3339c1fbbf Add MarvinJS to Result and TinyMce MarvinJS refactor 2019-07-15 17:17:14 +02:00
Anton Ignatov
57a273d5d0 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 11:34:41 +02:00
aignatov-bio
68ebf13bca
Fix tags modal issue (#1856) 2019-07-02 11:20:49 +02:00
Oleksii Kriuchykhin
4ea6b56582 Fix Step and Result file previews [SCI-3539] 2019-07-01 23:30:20 +02:00
aignatov-bio
81d10c8ce4
Remove recent protocol button on new step (#1841) 2019-06-19 12:49:22 +02:00
aignatov-bio
52a2f5cd0e
Add recent protocols dropdown to task page [SCI-3417] (#1800) 
* Add recent protocols dropdown to task page
 2019-06-13 15:47:29 +02:00
Oleksii Kriuchykhin
a855eade4c Merge branch 'master' into ok_SCI_3461 2019-06-11 17:48:02 +02:00
aignatov-bio
d207cf5dce
Refactored comments over SciNote [SCI-3505] (#1808) 
* Preparing helpers for comments

* Refactored comments over scinote

* Update events
 2019-06-04 14:40:21 +02:00
Oleksii Kriuchykhin
84a2ad4487 Refactor the async thumbnail reloading (spinner) [SCI-3461] 2019-05-21 17:29:33 +02:00
Mojca Lorber
b479a6a145 Cover all use cases for updating protocol status bar 2019-05-20 16:09:43 +02:00
Luka Murn
c26489acdc Update protocol status bar upon changing of protocol description 2019-05-17 10:22:16 +02:00
Oleksii Kriuchykhin
4b1c4bd140 Fix handling of proccessing step attachments [SCI-3381] 2019-05-13 17:12:06 +02:00
aignatov-bio
364f903b3c
Fix protocol preview name (#1749) 2019-05-13 10:17:47 +02:00
Oleksii Kriuchykhin
077ad52d4b Fix TinyMCE for results [SCI-3398] 2019-04-26 17:37:01 +02:00
Urban Rotnik
11a7a975af Merge branch 'features/scinote-improvements' into master-with-note-section 2019-04-23 14:50:03 +02:00
Anton Ignatov
aa2dab2014 Merge branch 'features/note-section' into master-with-note-section 2019-04-23 10:31:37 +02:00
Anton Ignatov
dd8b3caf65 Fix duplicate activtiy issue and fix link to inventory 2019-04-15 11:35:30 +02:00
Jure Grabnar
b12916b828 Add main functionality 2019-04-04 17:05:25 +02:00
Alex Kriuchykhin
bfd275c313
Merge pull request #1632 from okriuchykhin/ok_SCI_3281 
Fix permission checks for file editing and make protocol preview files read only [SCI-3281]
 2019-04-03 11:39:59 +02:00
aignatov-bio
e034a0c055
Fix bug with update protocol from repository and modal disable button [SCI-3284] (#1631) 
* Fix bug with update protocol from repository and modal disable button
 2019-04-03 09:18:18 +02:00
Oleksii Kriuchykhin
ffa7c5ecb2 Fix permition checks for file editing and make protocol preview files read only [SCI-3281] 2019-04-02 16:38:53 +02:00
Anton Ignatov
4ec0a3c871 Update TinyMCE image loader for new fields 2019-03-22 10:52:26 +01:00
aignatov-bio
5d9e4f30d4
Duplicates name protocol bug and rake task to rename duplicates [SCI-3047] (#1541) 
* Fix double protocols bug and rake task to rename duplicates
 2019-03-20 12:41:14 +01:00
Oleksii Kriuchykhin
b46f3566ef Fix rendering of HTML in RTE fields [SCI-3111] 2019-03-19 23:32:24 +01:00
Oleksii Kriuchykhin
a822227383 Add rich text editor to task and protocol description [SCI-3062][SCI-3071] 2019-03-14 16:27:33 +01:00
Oleksii Kriuchykhin
6cd033767c Fix comments form for new results [SCI-2877] 2018-11-21 23:48:43 +01:00
Luka Murn
84df2c81f9 Merge branch 'features/export-all' 
Conflicts:
	app/controllers/experiments_controller.rb
	app/controllers/my_modules_controller.rb
	db/schema.rb
 2018-11-13 09:14:02 +01:00
Oleksii Kriuchykhin
6e6bb73d2f Remove double initialization of comments on steps [SCI-2756] 2018-10-26 09:29:42 +02:00
mlorb
e5fca1b1cd change the rich text max limit on frontend to 50000 2018-10-18 14:22:15 +02:00
Oleksii Kriuchykhin
b2bd1cb849 Upgrade to Turbolinks 5 [SCI-2253] 2018-07-27 17:26:46 +02:00
Oleksii Kriuchykhin
6669beaf0e Change icons throughout the rest of application [SCI-2445] 2018-07-27 15:27:08 +02:00
Oleksii Kriuchykhin
a169639b3c Fix uploaded file max size validation in JS [SCI-2590] 2018-07-05 15:23:26 +02:00
zmagod
db1944cc90 move maximum file size limit to an ENV variable [fixes SCI-2415] 2018-06-19 14:15:14 +02:00
mlorb
06ce285ae2 add locales 2018-05-16 14:32:15 +02:00
mlorb
7df40e56c7 UI/UX restyle - fixes throughout application part one 2018-05-08 16:33:42 +02:00
Luka Murn
cb6fe50832 Merge branch 'master' into ux-release-1 
Conflicts:
	app/assets/javascripts/repositories/index.js
 2018-04-26 11:38:54 +02:00
zmagod
ea4bd8831f fixes bug with CSRF on file upload, fixes turbolink issues with remote form submition [fixes SCI-2284] 2018-04-10 13:19:53 +02:00
Oleksii Kriuchykhin
a105e61d48 Remove tutorial [SCI-1860] 2018-03-18 13:18:05 +01:00
Oleksii Kriuchykhin
deabd39a98 Fix protocol import button [SCI-1931] 2018-01-15 13:43:09 +01:00
Mojca Lorber
a0f7030a70 fix bug with tinyMCE text validaton 2017-09-07 14:54:12 +02:00
zmagod
c6bb20039b adds drag'n drop feature in task results [fixes SCI-1011], [fixes SCI-1310] and [fixes SCI-285] 2017-06-07 13:29:39 +02:00
zmagod
d34b2520b5 refactor results javascript, fixes bug with results archive [fixes SCI-1262] prevents duplicate request [fixes SCI-1248] 2017-05-12 15:59:58 +02:00
zmagod
81a3cb0a41 adds results js code in modules 2017-05-11 16:54:28 +02:00
zmagod
a4032f5cc6 first run 2017-05-10 13:53:32 +02:00
Matej Zrimšek
a5cffd06f3 Removed all tutorial data from ERB, so that all tutorial code is in JS. [needed for fixing SCI-719] 2017-04-25 16:03:50 +02:00
zmagod
0c2523beca Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-03-10 16:21:43 +01:00
Oleksii Kriuchykhin
cf8566df33 Add task complete/uncomplete functionality [SCI-999] 2017-02-10 14:27:20 +01:00
Oleksii Kriuchykhin
0f860496a7 Fix image preview after saving of report [SCI-951] 2017-01-26 14:42:14 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
Oleksii Kriuchykhin
14a6705b55 Implemented protocol export through Zip::OutputStream [SCI-742] 2017-01-23 17:43:48 +01:00
zmagod
2cbb8ba41a removed unneeded comments 2017-01-19 12:54:48 +01:00
zmagod
f2d5066dc7 fix some bugs 2017-01-19 11:37:59 +01:00
Luka Murn
a2935c6620 Add sample info modal popup to sample smart annotations 
This MR also loads datatables.js globally (as it's required by
the modal), so I removed it everywhere in code, and it shouldn't
be used anymore (e.g. '//= require datatables').

Closes SCI-892.
 2017-01-16 15:52:02 +01:00
zmagod
a434649f42 Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-01-03 16:35:25 +01:00
zmagod
de3099e4d1 removes asset_helper, fixes loading of processed thumbnails in results and steps and when loading protocols from repository 2016-12-09 13:59:49 +01:00
zmagod
ac52e643be cleanup direct upload 2016-12-08 11:26:13 +01:00
zmagod
8ca7151df4 added constant to load_from_file_size_error local 2016-12-06 13:52:07 +01:00
zmagod
ef2471d3f7 fixes inport eln error message and spinner [fixes SCI-752] 2016-12-05 10:44:58 +01:00
Oleksii Kriuchykhin
be59b85d3b Added additional checks for tutorial steps [SCI-703] 2016-11-22 13:55:23 +01:00
Matej Zrimšek
c8eb82cc85 Fixed tutorial step numbers and changed getting next page reference on protocols page. 2016-11-17 14:46:04 +01:00
Matej Zrimšek
92d990a715 Code for tutorial function steps parameter reformatted. Deleted Git merging line. 2016-11-17 14:46:04 +01:00
Matej Zrimšek
0e97bfc002 Refactored and added back button for tutorial for steps 21-22. Minor tutorial function renaming and docs update. 2016-11-17 14:46:04 +01:00
Matej Zrimšek
bfe7c19f93 Refactored and added back button for tutorial for steps 14-15. 2016-11-17 14:46:04 +01:00
Matej Zrimšek
33c96c9eee Refactored and added back button for tutorial for steps 12-13. 2016-11-17 14:46:04 +01:00
Oleksii Kriuchykhin
d2e29935cf Improved tutorial styling [SCI-685] 2016-11-16 15:44:06 +01:00
Oleksii Kriuchykhin
b9f982ead7 Additional steps added to tutorial and numbering of the steps fixed [SCI-571] 2016-11-11 10:07:34 +01:00
Oleksii Kriuchykhin
d2491a18a4 Tutorial Save Protocol step added [SCI-571] 2016-11-11 10:06:18 +01:00
Matej Zrimšek
ece89da391 Removed ruby constants duplicates in JS, because of caching problems. 2016-10-17 11:57:47 +02:00
Matej Zrimšek
05acf5a725 Replaced all Ruby constants instances in JS to be called from JS. 2016-10-17 11:57:46 +02:00
Jure Grabnar
1f67aec258 Prevent destroying protocols when file is edited 
SCI-552 #close
 2016-10-06 16:13:42 +02:00
zmagod
1eb9f772f4 refactor sciNote comments js and unified all comments behavior [fixes SCI-474] 2016-09-27 10:30:48 +02:00
zmagod
1cdfde827f fixes protocol and results comments 2016-09-27 09:26:25 +02:00
Matej Zrimšek
234918a76d Word wrapping and truncating added to whole application [fixes SCI-458]. Fixed some bugs which were related to long/too long text and validations. Modified parts of application to accomodate for longer text limits. 2016-09-21 19:48:18 +02:00
zmagod
06b1992e94 Merge branch 'zd_SCI_436' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_436 2016-09-21 19:20:55 +02:00
zmagod
9f56df02d2 removes comment tab and add comment in the info tab [fixes SCI-436] 2016-09-20 18:53:51 +02:00
zmagod
42bbc47f5f first working version 2016-09-20 17:06:07 +02:00
Matej Zrimšek
c2f0106993 Replaced hardcoded values with unified constants. Minor refactoring. Also front-end error handling was updated accordingly. [fixes SCI-408] 2016-09-16 15:56:44 +02:00
zmagod
b9b466cd8e Merge branch 'jg_sci_350_formulas' of https://github.com/jbargu/scinote-web into jbargu-jg_sci_350_formulas 2016-09-16 09:28:19 +02:00
Jure Grabnar
5c88bdeeae Add formulas for readonly results tables 2016-09-13 09:44:17 +02:00
Jure Grabnar
e096f936f9 Add formulas to results 2016-09-13 09:44:17 +02:00
Matej Zrimšek
af8ab3e081 Fixed step's checklist items editing (items not multiplying and new item insertion always at bottom) [fixes SCI-427]. Improved step/result comment GUI [SCI-446]. 2016-09-12 16:55:46 +02:00
Matej Zrimšek
b0ad6d0753 Fixed result file deletion and result name updating [fixes SCI-409]. Fixed step name and checklists names and its items names checking, and items removing [fixes SCI-407]. 2016-09-06 23:26:00 +02:00
Matej Zrimšek
e3a7f45fdf Merge branch 'master' into mz_file_upload_and_client_side_upgrade 
Conflicts:
	app/assets/javascripts/application.js
	app/views/results/_result_asset.html.erb
	app/views/steps/_step.html.erb
 2016-08-26 11:13:40 +02:00
Luka Murn
b533b0aca6 Fix another minor bug 2016-08-25 17:15:53 +02:00
Luka Murn
24dd25d9f5 Add edit/delete result comment functionality 
Lessons learned during this fix:
Don't use dependant: :destroy on both ends of association
between 2 ActiveRecords, or you will run into stack overflow.
 2016-08-25 13:51:31 +02:00
scibb
a76d82d188 delete and edit comments for projects, protocols, results, and workflow elements 2016-08-25 13:51:30 +02:00
Mojca Lorber
fb081be682 fixes warning messages when loading a new protocol that is linked with repository 2016-08-19 16:03:10 +02:00
Matej Zrimšek
e4a6a3944e Added deleting of files on S3 server when editing/removing a file. Some refactoring. 2016-08-17 18:13:35 +02:00
Matej Zrimšek
ccdccc5cf1 Changed file uploding to work properly with multiple files and be user friendly in case of errors. Some function names refactoring. 2016-08-17 18:11:13 +02:00
Matej Zrimšek
c87ba5b45c Multiple files upload handling and user experience improved. Spinner now also prevents user from accidentally leaving page. 2016-08-17 18:10:32 +02:00
Matej Zrimšek
951cf67b3d A lot of file uploading edge cases considered. File uploading is now actually redirected to S3 server, as before was not. Error functions changed and error output format specified, which should be used consistently throughout the application. Some other refactoring. 2016-08-17 18:08:21 +02:00
Matej Zrimšek
b70f49f4e0 Some additional refinements. 2016-08-17 18:00:04 +02:00
Matej Zrimšek
01aad1764c Some hotfixes to previous commit. Client-side file validation added (except file type validation). Some refactoring. 2016-08-17 17:54:45 +02:00
Matej Zrimšek
e2f94caa96 Step creation is now completelly validated on client-side also, to avoid front-end problems after server-side validation. This was needed as lots of issues were caused by this. Also step creation user experience is enriched and refactoring of related code was done. 2016-08-17 17:54:06 +02:00
zmagod
76dd4bc90a fixed protocol status bar [fixes SCI-318] 2016-08-16 10:47:23 +02:00
Luka Murn
076b67620f Migration GitLab -> GitHub 2016-07-21 13:11:15 +02:00
Luka Murn
055298fee8 Initial commit. 2016-02-12 16:52:43 +01:00