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370 commits

Author SHA1 Message Date
Zmago Devetak b225dc1e29 Merge pull request #210 from ZmagoD/zd_SCI_548_protocol_steps_not_visible 
Fixes protocol steps [fixes SCI-548]
 2016-10-12 08:13:28 +02:00
Oleksii Kriuchykhin 4c6a60c249 Added html_safe to notification email template 2016-10-11 16:46:20 +02:00
Oleksii Kriuchykhin 90c853743c Additional fixes to email markup and logic [SCI-443] 2016-10-11 16:43:17 +02:00
Oleksii Kriuchykhin 5399033fce Added user settings for email notifications [SCI-443] 2016-10-11 16:43:17 +02:00
Oleksii Kriuchykhin 8dc956010c Initial code commit [SCI-443] 2016-10-11 16:43:17 +02:00
zmagod ea305b356a fixes protocol steps [fixes SCI-548] 2016-10-11 09:10:12 +02:00
zmagod 42a30576e3 removed introductory popup [fixes SCI-534] 2016-10-11 08:33:50 +02:00
Luka Murn 448daab7c8 Merge pull request #207 from biosistemika/add-deface-hotfix 
Merge hotfix 1.3.1 into master
 2016-10-07 18:26:13 +02:00
zmagod 32f03ec94c Add Deface hooks 2016-10-06 16:47:36 +02:00
zmagod de00a19dd9 fixes styling in settings preferences [SCI-553] 2016-10-06 13:22:44 +02:00
zmagod 5b3889c172 notification index images [fixes SCI-554] 2016-10-06 12:09:01 +02:00
Luka Murn 5c80c8a817 Add "no notifications" to dropdown & notifications index page 2016-10-05 16:58:21 +02:00
Luka Murn 877574e853 Add link to settings from both notification lists 2016-10-05 16:26:26 +02:00
Oleksii Kriuchykhin 083a09c2f7 Add link to notifications index page 2016-10-05 16:13:05 +02:00
okriuchykhin 50f28fe883 Merge pull request #193 from okriuchykhin/ok_global_notifications-SCI-442 
Global notifications screen [SCI-442]
 2016-10-05 16:01:41 +02:00
Oleksii Kriuchykhin 4e2ad1d5e6 Fix the issues after code review [SCI-442] 2016-10-05 15:54:31 +02:00
Oleksii Kriuchykhin 246dae4f46 Code style improvements according to hound [SCI-442] 2016-10-05 15:51:11 +02:00
Oleksii Kriuchykhin 8907e54b49 Global notifications index page added [SCI-442] 2016-10-05 15:51:11 +02:00
Oleksii Kriuchykhin 8b5b0723d1 Initial code commit 2016-10-05 15:51:11 +02:00
Zmago Devetak f3708bcac0 Merge pull request #191 from ZmagoD/zd_SCI_469_ver2 
Comments date duplication
 2016-10-05 15:47:42 +02:00
Zmago Devetak eea310514a Merge pull request #194 from ZmagoD/zd_SCI_531_533 
Notification style fixes
 2016-10-05 15:27:36 +02:00
Zmago Devetak 71ad5bf034 Merge pull request #190 from ZmagoD/zd_SCI_529 
Prepare settings screen for notifications
 2016-10-05 14:54:47 +02:00
zmagod 9c7a690944 fixed type, fixed settings controller, fixes setting view on mobile devices 2016-10-05 14:33:22 +02:00
zmagod 5bf278298b fixed navbar on sceens smaller than 1000px 2016-10-05 12:22:27 +02:00
zmagod d7a4f85ba1 added links to notification project name and task 2016-10-05 09:40:44 +02:00
zmagod 6229e6a3a1 styled notification settings button [fixes SCI-529] 2016-10-04 16:12:56 +02:00
zmagod a68e7abc57 first run notification settings 2016-10-04 15:52:48 +02:00
Luka Murn 61cb9651c7 Merge pull request #188 from biosistemika/global-notifications 
Global notifications
 2016-10-04 08:30:50 +02:00
zmagod c9bbab1004 added html_safe to outputed message, hide notifications number when dropdown is toggled, clear all unseen notification form count when the dropdown is toggled, generate notification only to other users 2016-10-03 20:31:00 +02:00
mlorb 00b0f6ab07 Merge pull request #184 from mlorb/ml_sci_472 
Protocol steps/results - change title for comment section, remove info tab [SCI-472]
 2016-10-03 17:20:45 +02:00
mlorb 153b692c0c Merge pull request #181 from mlorb/ml_sci_321 
Displaying more information for individual samples in Sample table [SCI-321]
 2016-10-03 16:37:35 +02:00
Mojca Lorber 3b0185a45b change title of modal 2016-10-03 16:33:58 +02:00
zmagod 0d23f05698 Merge branch 'global-notifications' of https://github.com/biosistemika/scinote-web into zd_SCI_440 2016-10-03 16:14:22 +02:00
zmagod 36fb2713b3 start fixing comments dates 2016-10-03 16:10:20 +02:00
Zmago Devetak 91c7d8a952 Merge pull request #176 from ZmagoD/zd_SCI_474 
Unify the comments
 2016-10-03 15:26:17 +02:00
zmagod ea17182372 generate notifications [fixes SCI-440] 2016-10-03 11:37:29 +02:00
Mojca Lorber 5b32be2137 adding subtitle in modal 2016-10-03 09:28:58 +02:00
zmagod 2ee02ec472 mark all seen notifications 2016-10-03 08:20:23 +02:00
Luka Murn 49c5474219 Merge pull request #178 from mz3944/mz_help_button_SCI_13_v2 
Fixed wrong CSS formatting and added release notes link to help link.
 2016-09-30 08:27:57 +02:00
Mojca Lorber 35477b1005 Remove Info tab and change comment title on results view 2016-09-29 16:43:19 +02:00
zmagod 60a503f115 added assignment image 2016-09-29 16:05:43 +02:00
zmagod e1a1b93d44 fixed migrations 2016-09-29 14:49:58 +02:00
Mojca Lorber c9fbf845f1 Remove Info tab and change comment title 2016-09-29 14:37:29 +02:00
Matej Zrimšek a6324d61c5 Fixed wrong CSS formatting, added release notes link to help links, and links now open in new tab. 2016-09-29 14:27:26 +02:00
Mojca Lorber 5d905f0094 refactoring 2016-09-29 14:18:04 +02:00
Luka Murn f1b74f1906 Fix image names in introductory popup 
This will make sure browsers don't display old, cached images to clients.
 2016-09-29 13:44:38 +02:00
zmagod cab1e9b521 start implement toolbar view 2016-09-28 16:03:52 +02:00
Mojca Lorber efa7a1d7b5 add sample information in pop-up 2016-09-28 15:46:41 +02:00
zmagod 2a86aaf7e4 changed popout content [fixes SCI-520] 2016-09-28 15:12:30 +02:00
zmagod 2235778110 fixed project and task comments + fixed date issue 2016-09-27 16:19:31 +02:00
zmagod 1eb9f772f4 refactor sciNote comments js and unified all comments behavior [fixes SCI-474] 2016-09-27 10:30:48 +02:00
zmagod 980ff63104 fixed task comments 2016-09-27 09:18:46 +02:00
zmagod 02bfa1949e fixed project comments 2016-09-27 09:00:02 +02:00
Mojca Lorber cc5cdf2577 Merge branch 'master' of https://github.com/biosistemika/scinote-web into ml_sci_321 2016-09-26 09:39:05 +02:00
Mojca Lorber c2b742374f adding popup sample info 2016-09-23 17:45:02 +02:00
mz3944 1c1a7c231e Merge pull request #169 from mz3944/mz_help_button_SCI_13 
Added help dropdown. [SCI-13]
 2016-09-23 13:04:38 +02:00
okriuchykhin 4f0fb7074b Merge pull request #167 from okriuchykhin/ok_SCI-470 
Fix issue with long tags in dropdown list [fixes SCI-470]
 2016-09-23 13:00:06 +02:00
Matej Zrimšek fc86b7b1fd Added help dropdown. [SCI-13] 2016-09-23 12:52:38 +02:00
Oleksii Kriuchykhin e8ac754829 Fix issue with long tags in dropdown list [fixes SCI-470] 2016-09-23 11:05:17 +02:00
okriuchykhin b5c861583d Merge pull request #157 from okriuchykhin/ok_SCI_430 
Fixes issue with unneeded sort icon [fixes SCI-430]
 2016-09-22 16:39:26 +02:00
okriuchykhin 37eedf17a0 Merge pull request #155 from okriuchykhin/ok_SCI-451 
Fixes issue with zoom buttons on canvas [fixes SCI-451]
 2016-09-22 16:11:45 +02:00
Matej Zrimšek 234918a76d Word wrapping and truncating added to whole application [fixes SCI-458]. Fixed some bugs which were related to long/too long text and validations. Modified parts of application to accomodate for longer text limits. 2016-09-21 19:48:18 +02:00
zmagod 06b1992e94 Merge branch 'zd_SCI_436' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_436 2016-09-21 19:20:55 +02:00
zmagod 9f56df02d2 removes comment tab and add comment in the info tab [fixes SCI-436] 2016-09-20 18:53:51 +02:00
zmagod 42bbc47f5f first working version 2016-09-20 17:06:07 +02:00
zmagod da86208441 styled step comments 2016-09-20 14:13:40 +02:00
Oleksii Kriuchykhin 411ee4ee77 Fixes issue with unneeded sort icon [fixes SCI-430] 2016-09-20 11:30:11 +02:00
zmagod cd64e035c0 set form validations 2016-09-20 09:50:03 +02:00
zmagod f48553e807 fixed ajax call 2016-09-19 16:12:07 +02:00
Oleksii Kriuchykhin a3b00d0ff8 Fixes issue with zoom buttons on canvas [fixes SCI-451] 2016-09-16 16:27:54 +02:00
Matej Zrimšek 20ca37f185 Readded client-side result's comment validation. 2016-09-16 15:57:54 +02:00
zmagod 938aa32190 js tweaks 2016-09-16 15:22:24 +02:00
Zmago Devetak 431227c0a4 Merge pull request #147 from maslick/resultCommentsError1000Chars 
Fixed: Comments in results have no error message if the text exceeds 1000 characters
 2016-09-16 09:38:38 +02:00
zmagod b9b466cd8e Merge branch 'jg_sci_350_formulas' of https://github.com/jbargu/scinote-web into jbargu-jg_sci_350_formulas 2016-09-16 09:28:19 +02:00
zmagod e90f0bd3d5 refactor step view 2016-09-16 09:04:21 +02:00
mlorb 587369e7a6 Merge pull request #152 from mlorb/ml_sci_428 
fixes responsiveness on mobile phone for sample view [SCI-428]
 2016-09-15 12:11:48 +02:00
zmagod 0a2ab57e28 styled new comments layout 2016-09-15 11:45:51 +02:00
zmagod e3ae22763e removed comments tab in protocol step 2016-09-15 08:46:14 +02:00
mlorb 098e17c0d8 Merge pull request #149 from mlorb/ml_sci_420 
fixes links and missing experiment level in search results [SCI-420]
 2016-09-14 15:42:16 +02:00
Zmago Devetak d0a180a1e8 Merge pull request #148 from ZmagoD/zd_SCI_342 
fixes sidebar expanded elements when adding new experiments
 2016-09-14 13:48:34 +02:00
Mojca Lorber a9029e0928 fixes responsiveness on mobile phone for sample view 2016-09-14 11:08:40 +02:00
Mojca Lorber 36378d03e2 fixes links and missing experiment level in search results 2016-09-13 17:13:58 +02:00
Zmago Devetak b26bf7b183 Merge pull request #136 from ZmagoD/zd_SCI_370 
Enabled to delete results in task archive [fixes SCI-370]
 2016-09-13 15:22:08 +02:00
zmagod 691ae94d2c enabled to delete results in task archive [fixes SCI-370] 2016-09-13 13:26:04 +02:00
zmagod 65383f1824 fixes sidebar expanded elements when adding new experiments [fixes SCI-342] 2016-09-13 13:09:57 +02:00
Pavel Maslov 15ea8fc0dc Bug fixed: comments in results have no error message if the text exceeds 1000 characters. 2016-09-13 12:01:56 +02:00
Zmago Devetak d37c7b853b Merge pull request #140 from ZmagoD/zd_SCI_341 
adds label to current project in clone experiment modal [fixes SCI-341]
 2016-09-13 11:59:01 +02:00
Jure Grabnar 6519e8dbb1 Add e-notation preprocessing to formulas 
SCI-350 #close
 2016-09-13 09:46:22 +02:00
Jure Grabnar fa3515d2eb Add formulas to reports 2016-09-13 09:46:21 +02:00
Jure Grabnar 3b364be70b Add formulas to steps tables 2016-09-13 09:44:17 +02:00
Jure Grabnar e096f936f9 Add formulas to results 2016-09-13 09:44:17 +02:00
Zmago Devetak 1368716aa0 Merge pull request #130 from ZmagoD/zd_SCI_348 
project overview - updating (or creating new) experiment details
 2016-09-08 12:49:35 +02:00
mlorb f4029a04fd Merge pull request #142 from mlorb/ml_sci_415 
fixes navbar size when resizing window [SCI-415]
 2016-09-08 12:46:36 +02:00
Mojca Lorber 302a777615 fixes button collision 2016-09-08 12:37:06 +02:00
Luka Murn 0c1759c15a Merge pull request #135 from Ducz0r/lm-sci-397 
Resize archived experiment panels
 2016-09-07 11:14:53 +02:00
zmagod d482dff2e6 adds label to current project in clone experiment modal [fixes SCI-341] 2016-09-07 08:26:36 +02:00
Matej Zrimšek b0ad6d0753 Fixed result file deletion and result name updating [fixes SCI-409]. Fixed step name and checklists names and its items names checking, and items removing [fixes SCI-407]. 2016-09-06 23:26:00 +02:00
zmagod b44a284b54 sets edit experiment validation 2016-09-06 11:46:28 +02:00
zmagod 9d469f9092 sets front end validation for new experiment modal [fixes SCI-348] 2016-09-06 11:44:03 +02:00
zmagod de6c03a73b setup experiment modal input validation 2016-09-06 11:44:03 +02:00
Zmago Devetak 9440371f3f Merge pull request #131 from ZmagoD/zd_SCI_400 
Sets front end validation for experiment move action [fixes SCI-400]
 2016-09-06 11:39:38 +02:00
Luka Murn bda5120548 Resize archived experiment panels 
Closes SCI-397.
 2016-09-06 10:55:05 +02:00
Mojca Lorber 47983812e7 minimize buttons on mobile phone 2016-09-06 10:10:49 +02:00
Luka Murn 81883911c4 Merge pull request #132 from Ducz0r/lm-sci-228 
Updates to invite users to team modal window
 2016-09-05 15:53:15 +02:00
mlorb aea288371f Merge pull request #129 from mlorb/ml_sci_310 
adds tasks, experiment and project category in protocol search results [SCI-310]
 2016-09-05 15:31:35 +02:00
Mojca Lorber 6a802e9fa7 fixes redirection to project page for all categories in search results 2016-09-05 11:40:49 +02:00
Mojca Lorber 740392c687 optimization 2016-09-05 10:58:37 +02:00
zmagod 667fb67052 sets front end validation for experiment move action [fixes SCI-400] 2016-09-02 16:31:17 +02:00
Zmago Devetak ea26a532e4 Merge pull request #126 from ZmagoD/zd_SCI_332 
By default all experiments should be collapsed
 2016-09-02 15:58:03 +02:00
Mojca Lorber 83034f705d adds tasks, experiment and project category in protocol search results 2016-09-02 11:45:54 +02:00
Luka Murn 61f4fbd1d4 Remove warning info when removing pending user from organization 2016-09-01 13:23:53 +02:00
zmagod ac7ac95da8 [fixes SCI-332] 2016-09-01 10:38:20 +02:00
zmagod e8f971829a added project to session storage 2016-08-31 15:13:17 +02:00
zmagod eb394ce209 fixes searching tables bug [fixes SCI-402] 2016-08-31 11:01:10 +02:00
zmagod b05c3df4d3 adds toggle id only to elements with modules 2016-08-31 10:25:40 +02:00
zmagod eb39eedfdf [fixes SCI-398] again 2016-08-31 08:46:51 +02:00
Zmago Devetak 375a72db18 Merge pull request #114 from ZmagoD/zd_SCI_294_vol2 
fixes reports file name [fixes SCI-294]
 2016-08-30 14:59:07 +02:00
Mojca Lorber 43c3a0bb81 fixes merge again 2016-08-30 12:54:08 +02:00
Mojca Lorber 81f9e59dcd fixes merge 2016-08-30 12:14:15 +02:00
Mojca Lorber e8d187b5f6 Merge branch 'ml_sci_395' 
Conflicts:
	app/views/canvas/edit/modal/_move_module.html.erb
	app/views/canvas/edit/modal/_move_module_group.html.erb
 2016-08-30 11:41:25 +02:00
zmagod f356acb882 fixes reports file name [fixes SCI-294] 2016-08-30 11:36:39 +02:00
Zmago Devetak 6878adda46 Merge pull request #112 from ZmagoD/zd_SCI_338_vol2 
Tutorial
 2016-08-30 11:07:51 +02:00
jbargu fa357dd54f Merge pull request #110 from jbargu/jg_SCI_328_move_task_no_experiment 
Remove move on empty experiments
 2016-08-30 11:06:16 +02:00
Mojca Lorber 596d403d5f change position of buttons 2016-08-30 09:16:53 +02:00
zmagod 5518d1cd1e fixed 16 step of tutorial 2016-08-30 08:52:44 +02:00
Jure Grabnar 0c184dcdcf Remove Move button on empty experiments 
SCI-328 #close.
 2016-08-30 08:26:59 +02:00
zmagod 2ac20d1af1 adds new image + new panel title [fixes SCI-336] 2016-08-29 09:28:29 +02:00
Luka Murn a0311970f8 Add missing commits for showing image and not able to preview 2016-08-26 16:49:32 +02:00
zmagod d886d05ccb Merge branch 'zd_SCI_338' 2016-08-26 16:32:49 +02:00
Matej Zrimšek e3a7f45fdf Merge branch 'master' into mz_file_upload_and_client_side_upgrade 
Conflicts:
	app/assets/javascripts/application.js
	app/views/results/_result_asset.html.erb
	app/views/steps/_step.html.erb
 2016-08-26 11:13:40 +02:00
Zmago Devetak 0cfc758f43 Merge pull request #102 from ZmagoD/zd_SCI_336 
implement first time popup logic
 2016-08-26 09:19:36 +02:00
zmagod 2031c42920 fixed confirmation text 2016-08-26 09:13:45 +02:00
zmagod 1738ca66d2 one-time introductory popup [fixes SCI-336] 2016-08-25 18:44:21 +02:00
Luka Murn 8018cff02e Merge pull request #103 from Ducz0r/bb_edit_delete_comments 
Edit&delete comments
 2016-08-25 17:18:48 +02:00
Zmago Devetak 1b21e55fea Merge pull request #100 from ZmagoD/zd_SCI_381 
Adds experiment and team to tag search resuls [fixes SCI-381]
 2016-08-25 15:43:50 +02:00
zmagod 8ff645fb89 disabled experiment dropdown actions 2016-08-25 15:16:51 +02:00
Zmago Devetak b090fd8d5b Merge pull request #95 from ZmagoD/zd_SCI_374 
adds edit workflow link if no workflow [fixes SCI-374]
 2016-08-25 14:07:33 +02:00
Luka Murn 6d86a02d7c Add individual permission checks in dropdowns 
Closes SCI-258.
 2016-08-25 13:51:50 +02:00
Luka Murn 24dd25d9f5 Add edit/delete result comment functionality 
Lessons learned during this fix:
Don't use dependant: :destroy on both ends of association
between 2 ActiveRecords, or you will run into stack overflow.
 2016-08-25 13:51:31 +02:00
Luka Murn bac0455435 Add edit&delete functionality to step comments 
This commit also:
* fixes a bug in permission_helper.rb,
* fixes comments.js a bit,
* adds 2 more re-renders of dropdown position calculations to canvas.js and projects/index.js.
 2016-08-25 13:51:31 +02:00
Luka Murn c92d016f65 Add edit&delete module/task comments functionality 
This required a minor fix of comments.js.
 2016-08-25 13:51:31 +02:00
Luka Murn f0d9cb96fa Add edit project comments functionality 2016-08-25 13:51:30 +02:00
Luka Murn 15c0baeee8 Add delete project comment functionality 
This commit also removes the old code from @bberic.
 2016-08-25 13:51:30 +02:00
Luka Murn 5569a1e6d2 Revert 2 files that contained no changes 2016-08-25 13:51:30 +02:00
scibb a76d82d188 delete and edit comments for projects, protocols, results, and workflow elements 2016-08-25 13:51:30 +02:00
zmagod 5fabe06b8d implement first time popup logic 2016-08-25 11:44:49 +02:00
Mojca Lorber 4a5d720724 change position of overview and samples 2016-08-25 11:19:53 +02:00
zmagod 1120ef1407 adds experiment and team to tag search resuls [fixes SCI-381] 2016-08-25 10:40:03 +02:00
mlorb c38a4e2614 Merge pull request #94 from mlorb/ml_sci_375 
add move experiment instructions [SCI-375]
 2016-08-25 09:45:16 +02:00
mlorb 0a066f436f Merge pull request #96 from mlorb/ml_sci_369 
buttons update on experiment overview [SCI-369]
 2016-08-25 08:54:16 +02:00