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5929 commits 46 branches 186 tags 169 MiB
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4614 commits

Author SHA1 Message Date
Miha Mencin
1b31f7f30a SCI-3640 set max width of search bar to 50% 2019-07-03 13:16:07 +02:00
Miha Mencin
882e453b9c
Merge pull request #1880 from biosistemika/SCI-3644-hide-import-button 
SCI-3644 Import button is always visible
 2019-07-03 11:50:10 +02:00
Oleksii Kriuchykhin
028e647f4d Upgrade to Rails 5.2.3 [SCI-3651] 2019-07-03 11:15:13 +02:00
Alex Kriuchykhin
48a9db4390
Merge pull request #1882 from jbargu/jg_sci_3590 
Update js-yaml by upgrading rails/webpacker [SCI-3590]
 2019-07-03 11:07:06 +02:00
Miha Mencin
37cc526ac9 fix CR comments 2019-07-03 10:22:59 +02:00
Jure Grabnar
4715e8ec4b Fix building of zero steps protocls 
Close SCI-3648
 2019-07-03 09:34:15 +02:00
Miha Mencin
611c417b43 code review changes 2019-07-03 09:21:41 +02:00
aignatov-bio
d2849c88fd
Remove draft after save step (#1878) 2019-07-03 09:18:52 +02:00
aignatov-bio
65cf5e5787
Fix activities menu selector highlight (#1877) 2019-07-03 09:18:41 +02:00
Miha Mencin
ab038ffdf7 SCI-3649 adding catalog number, fixing up the design a bit 2019-07-02 19:47:05 +02:00
Miha Mencin
74b4e0d774 SCI-3644 hide the import button and show it only on hover & when appropriate user 2019-07-02 18:24:07 +02:00
Jure Grabnar
fc961b570c Comment out index.jsx 
Closes SCI-3590
 2019-07-02 18:07:12 +02:00
Miha Mencin
4efb0b5a4a SCI-3645 added descending sorting by name 2019-07-02 17:42:55 +02:00
aignatov-bio
b1a74a893c
Remove strange symbol (#1874) 2019-07-02 11:21:14 +02:00
aignatov-bio
378e91b426
Fix links on search page (#1867) 2019-07-02 11:21:00 +02:00
aignatov-bio
68ebf13bca
Fix tags modal issue (#1856) 2019-07-02 11:20:49 +02:00
Alex Kriuchykhin
7e4852d5aa
Merge pull request #1871 from okriuchykhin/ok_SCI_3511_v2 
Fix TinyMCE editor initialization for step editing [SCI-3511]
 2019-07-01 16:08:36 +02:00
Mojca Lorber
41935a9471 Remove unassign_user_from_project notification and change code to use helper method for assignment notification generation 2019-07-01 13:44:27 +02:00
aignatov-bio
2793777463
Features/docx report (#1873) 
* Initial setup for docx report

* Add render for project, experiment, my_module

* Implement converter for RTE fields

* Add all report elements

* fix markup

* Change headers, remove empty blocks, refactored repository draw

* Add smart annotations support

* Fix justify fields

* Prepare for addons integration

* Fix markup

* Add comments to GemFile

* Fix TinyMCE error

* Change UI for new report download selector

* Fix file error in inventory cell for docx

* Fix i18n object for header
 2019-07-01 10:14:16 +02:00
Oleksii Kriuchykhin
2f39b7f22b Fix TinyMCE editor initialization for step editing [SCI-3511] 2019-06-28 12:06:04 +02:00
Jure Grabnar
ebbb36cc6d Remove border from the import button 2019-06-28 11:32:47 +02:00
Jure Grabnar
8146a6a42c Assign name = position if protocolsIO step has no name 2019-06-28 11:29:03 +02:00
Jure Grabnar
5430fb311d Hound fixes 2019-06-28 10:41:20 +02:00
Jure Grabnar
c10428cd2a Fix sorting buttons not applying params 2019-06-28 08:55:27 +02:00
Jure Grabnar
1a9fca87d2 Fix non-existent protocol-card in preview banner 2019-06-28 08:49:12 +02:00
Jure Grabnar
149f45f4fc Hound fixes 2019-06-28 02:31:25 +02:00
Jure Grabnar
bc4b07cc0f Refactor hardcoded protocol_source in SearchService 2019-06-28 02:26:31 +02:00
Jure Grabnar
9be4fc2470 Fix tests 2019-06-28 02:19:06 +02:00
Jure Grabnar
7fb696cf48 Fix unclickable import modal 2019-06-28 02:00:05 +02:00
Jure Grabnar
03b81400a9 Add timeout to search 2019-06-28 01:50:52 +02:00
Jure Grabnar
1ccabf62b3 Add preview banner in external protocols 2019-06-28 01:38:33 +02:00
Jure Grabnar
81695665c7 Add hover effect on the card 2019-06-28 00:47:08 +02:00
Jure Grabnar
d3afcbed50 Style card view on external protocols 
Closes SCI-3535
 2019-06-28 00:43:05 +02:00
Jure Grabnar
7fb650a125 Change click -> onchange event for sort_by buttons 2019-06-27 22:56:38 +02:00
Jure Grabnar
0a77cedaf8 Fix sorting of external protocols and start showing results 2019-06-27 22:48:56 +02:00
Jure Grabnar
8338892fc6 Update external protocols form to include sort_by 2019-06-27 21:26:28 +02:00
Urban Rotnik
9cb4454537 New implementation for attachments creation 2019-06-27 17:02:06 +02:00
Urban Rotnik
1fd0ca6795 Add steps preview 2019-06-27 16:46:02 +02:00
Urban Rotnik
2761079479 Add modal for import 2019-06-27 16:46:02 +02:00
Jure Grabnar
82fb8ebd2e
Implement protocols.io error handling (#1869) 
Implement protocols.io error handling
 2019-06-27 16:35:55 +02:00
Jure Grabnar
06b8d1fda7 Update ApiClient tests 
Closes SCI-3434
 2019-06-27 14:54:19 +02:00
Jure Grabnar
8a7a2eb097 Add StandardError checking for ProtocolNormalizer 2019-06-27 10:12:00 +02:00
Jure Grabnar
d31f978e55 DRY up protocols importer services errors 2019-06-27 10:11:36 +02:00
Jure Grabnar
86bc69e510 Simplify V3 errors structure 2019-06-27 09:42:21 +02:00
Jure Grabnar
7d71608166 Add spinner to external preview 2019-06-26 19:43:35 +02:00
Mojca Lorber
9fd83d54a0 Put network error handeling into api and refactor errors 2019-06-26 14:04:03 +02:00
aignatov-bio
83bc9eb22f
Merge pull request #1839 from aignatov-bio/ai-sci-3369-activity-for-edited-image-annotation 
Adding new activities for image editing [SCI-3369]
 2019-06-24 10:31:39 +02:00
aignatov-bio
57e0478b81
Merge pull request #1855 from aignatov-bio/ai-sci-3583-fix-table-header-in-report 
Fix handsontable [SCI-3583]
 2019-06-24 09:39:35 +02:00
aignatov-bio
81c76fb112
Merge pull request #1854 from aignatov-bio/ai-sci-3586-comment-counter-not-updated 
Fix comments counter for zero comments [SCI-3586]
 2019-06-24 09:39:22 +02:00
aignatov-bio
8ec6802b19
Merge pull request #1853 from aignatov-bio/ai-sci-3581-too-long-protocol-name-in-task 
Trunc long protocol name on task page [SCI-3581]
 2019-06-24 09:39:07 +02:00
Anton Ignatov
76e09a2a3d Clear TinyMce autosave after manual save 2019-06-21 14:21:03 +02:00
Anton Ignatov
dfece85ea1 Fix handsone table 2019-06-21 11:16:44 +02:00
Anton Ignatov
57ef9573f2 Fix comments counter for zero comments 2019-06-21 10:43:41 +02:00
Anton Ignatov
bc98cac9cc Trunc long protocol name on task page 2019-06-20 15:28:15 +02:00
Alex Kriuchykhin
db7c6435b3
Merge pull request #1851 from okriuchykhin/ok_SCI_3436 
Implement saving of attachments ordering on steps [SCI-3436]
 2019-06-20 11:31:15 +02:00
Anton Ignatov
df344f4d03 Merge branch 'master' into ai-sci-3369-activity-for-edited-image-annotation 2019-06-20 09:43:53 +02:00
Anton Ignatov
3069ec8dd2 Add check for edit permission 2019-06-20 09:43:23 +02:00
Jure Grabnar
b2b752fcf8 Fix hound complaints 2019-06-19 23:37:04 +02:00
Jure Grabnar
fcd42a4178 Fix border radius around active sort button 2019-06-19 22:59:30 +02:00
Jure Grabnar
b3c3b68dc2 Add external preview to External Protocols tab 
Closes SCI-3563
 2019-06-19 22:54:20 +02:00
Anton Ignatov
a843a016a0 Fix markup and naming 2019-06-19 15:19:47 +02:00
Oleksii Kriuchykhin
f2b617ac12 Fix code formatting [SCI-3436] 2019-06-19 14:23:12 +02:00
Oleksii Kriuchykhin
ae1a63037b Raise an exception if required methods for ViewableModel are not implemented [SCI-3436] 2019-06-19 14:17:17 +02:00
Anton Ignatov
dae5a661c9 Merge branch 'master' of https://github.com/biosistemika/scinote-web 2019-06-19 14:11:51 +02:00
aignatov-bio
83b9efd7dd Fix right floating images in RTE editor (#1842) 2019-06-19 14:06:33 +02:00
aignatov-bio
609c408c77 Fix error on new step saving command (#1845) 2019-06-19 14:06:25 +02:00
aignatov-bio
5734d0cdd7 Fix TinyMCE field selector for steps (#1844) 2019-06-19 14:06:16 +02:00
aignatov-bio
4ddcbe5d75 Fix user permission for recent protocols (#1843) 2019-06-19 14:06:02 +02:00
aignatov-bio
9653f16196
Convert image to base64 in PDF reports [SCI-3557] (#1835) 
* Convert image to base64 in PDF reports

* Fix typo error
 2019-06-19 13:57:04 +02:00
aignatov-bio
81d10c8ce4
Remove recent protocol button on new step (#1841) 2019-06-19 12:49:22 +02:00
Urban Rotnik
bf6041e13d Update sanitization of html descriptions 2019-06-19 11:05:22 +02:00
Urban Rotnik
7e69375016 Drop header column and row when extract tables 2019-06-19 10:47:38 +02:00
Urban Rotnik
2a579f2240 Add Warnings, Before start and Guidelinese to protocol description 2019-06-19 09:02:42 +02:00
Mojca Lorber
ebcaa4b014 Implement protocols.io error handling for api client and normalizer 2019-06-18 14:01:57 +02:00
Urban Rotnik
c691ad80b5 Add fields to query params for ApiClient 2019-06-17 12:24:16 +02:00
Urban Rotnik
88d96c0938 Use service in controller 2019-06-17 12:24:15 +02:00
Urban Rotnik
7fad5fc594 Add search service and normalizer for list 2019-06-17 12:24:15 +02:00
Jure Grabnar
4f6397b5b9 Add form to external_sources#new action 
Closes SCI-3532
 2019-06-17 12:24:15 +02:00
Jure Grabnar
c8b8bcffdb Add external_protocols#show action 2019-06-17 12:24:14 +02:00
Jure Grabnar
f7c6f78925 Add external_protocols#index action 2019-06-17 12:24:14 +02:00
Jure Grabnar
2a61075156 Add ExternalProtocols#create action and tests 2019-06-17 12:24:14 +02:00
Jure Grabnar
9baa66c998 Refactor OnlineSources -> ExternalProtocols 2019-06-17 12:24:13 +02:00
Jure Grabnar
eb0d677a36 Refactor pio_protocol -> built_protocol 2019-06-17 12:24:13 +02:00
Jure Grabnar
94e7fe1e6c OnlineSourcesController skeleton and #new action tested 2019-06-17 12:24:13 +02:00
Jure Grabnar
7adef9cc9e Change sort buttons positions 
Closes SCI-3534
 2019-06-17 12:24:13 +02:00
Jure Grabnar
218cf84775 Hound fixes 2019-06-17 12:24:12 +02:00
Jure Grabnar
d103f8ffec Finish external protocols screen 
Closes SCI-3534
 2019-06-17 12:24:12 +02:00
Jure Grabnar
0b60da9b4c Add ExternalProtocols skeleton tab 2019-06-17 12:24:12 +02:00
Urban Rotnik
0d43ecdfab Import protocol service after object is built 2019-06-17 12:24:11 +02:00
Jure Grabnar
eb275c4d12 Add tests for BuildProtocolService and fix bugs 2019-06-17 12:24:11 +02:00
Jure Grabnar
362b0cd45d Hound fixes 2019-06-17 12:24:11 +02:00
Jure Grabnar
640f6c1211 Fix tests after BuildProtocolFromClientService refactor 
Closes SCI-3544
 2019-06-17 12:24:11 +02:00
Jure Grabnar
1e8627c450 Refactor ImportProtocol service to BuildProtocolService 
Closes SCI-3544
 2019-06-17 12:24:10 +02:00
Urban Rotnik
a15596a126 Add ImportProtocolService 2019-06-17 12:24:10 +02:00
Urban Rotnik
2bb4f558b7 View rendering simplified, small improvements 2019-06-17 12:24:09 +02:00
Urban Rotnik
807104035c Add StepBuilder, TableBuilder, AssetBuilder for PIO, normalized updated 2019-06-17 12:24:09 +02:00
Urban Rotnik
6a4deb0201 Add ProtocolIntermediateObject 2019-06-17 12:24:09 +02:00
Urban Rotnik
aadf2eecb4 Basic data normalizer for ProtocolIO 2019-06-17 12:24:08 +02:00
Urban Rotnik
ec49388283 Add protocol base normalizer class 2019-06-17 12:24:08 +02:00
Jure Grabnar
c1cee07a63 Extract API client constants to constants.rb 2019-06-17 12:24:08 +02:00