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4969 commits

Author SHA1 Message Date
aignatov-bio 6fda5401f5
Fix protocol import (#1981) 2019-08-14 09:06:25 +02:00
aignatov-bio 710af85743
Fix template generating (#1980) 2019-08-14 09:06:12 +02:00
Alex Kriuchykhin 960e69eaa8 Fix wopi file download URL [SCI-3757] (#1975) 2019-08-14 09:06:00 +02:00
Urban Rotnik 0ce331227c Update permission and model to share repository over all teams 2019-08-13 14:07:24 +02:00
aignatov-bio 737f9e572c
Replace marvinJS logo and fix some merge issues [SCI-3731] (#1976) 
* Replace marvinJS logo and fix some merge issues

* Fix tests
 2019-08-13 11:04:19 +02:00
aignatov-bio aad726ac40
Update CSS for share modal (#1978) 2019-08-12 15:02:16 +02:00
Urban Rotnik dc4751e49a Update scope 'accessible_by_teams' and fix load_vars method in controllers 2019-08-12 10:55:30 +02:00
Oleksii Kriuchykhin 32054c5516 Handle situation for assets without blob in list sorting [SCI-3757] 2019-08-09 15:17:19 +02:00
Oleksii Kriuchykhin c352a73d79 ActiveStorage fixies after latest master merge [SCI-3757] 2019-08-09 14:56:00 +02:00
Urban Rotnik 61af9e21ad Fix datatable filter position 2019-08-09 14:22:24 +02:00
Urban Rotnik d04b0ccff1 Move '+ new inventory' link above list in sidebar 2019-08-09 14:15:51 +02:00
Urban Rotnik 7719b825e3 Update wording for sharing activities, rename button, add view-only paragraph 2019-08-09 14:15:51 +02:00
Urban Rotnik 786716974b Add validation for team on TeamRepository 2019-08-09 14:15:50 +02:00
Urban Rotnik 23d7d117e9 Remove Repository's team from sharring list 2019-08-09 14:15:50 +02:00
Urban Rotnik 32783576c1 Add controller action 'multiple_update' 
Add controller action, add update permission activity, add JS for handling ajax req
 2019-08-09 14:15:50 +02:00
Urban Rotnik 6cbece9f86 Add service for multiple share 2019-08-09 14:15:49 +02:00
Urban Rotnik 2648521924 Invite modal with form 2019-08-09 14:15:49 +02:00
Urban Rotnik 466b05a5bc Update repository index page 2019-08-09 14:15:48 +02:00
Mojca Lorber 3c1f28ec06 fix smart annotation permission check 2019-08-09 14:13:03 +02:00
Mojca Lorber 71b881cbdf fix failing tests 2019-08-09 14:13:03 +02:00
Mojca Lorber 4c7c7ccdf1 Add ability to browse through shared inventories to smart annotations 2019-08-09 14:13:03 +02:00
Mojca Lorber 0e5afa6048 Small refactor 2019-08-09 14:13:02 +02:00
Mojca Lorber 26bd81621f Add new icons also to the inventories list in navigation 2019-08-09 14:13:02 +02:00
Mojca Lorber 7d4941015f Update global search, so it will be able to search through shared inventories 2019-08-09 14:13:01 +02:00
Urban Rotnik 171cdb319b Add ShareInventory activities 2019-08-09 14:13:01 +02:00
Mojca Lorber b005f90e95 Add tests for permission can_read_repository 2019-08-09 14:13:01 +02:00
Mojca Lorber 7e9be932f3 Make scope for repositories accessible by teams and simplify read permission 2019-08-09 14:13:00 +02:00
Mojca Lorber 15432ac851 Make changes to inventory list in navigation based on new mockup 2019-08-09 14:13:00 +02:00
Mojca Lorber cac7dab440 Show shared inventories in left navigation and fix read repository permission 2019-08-09 14:13:00 +02:00
Urban Rotnik 1a77702fa7 Add uniq index for Repository and Team in TeamRepositories 2019-08-09 14:13:00 +02:00
Urban Rotnik 5456c1e38a Add basic controller for TeamRepositories 2019-08-09 14:12:59 +02:00
Urban Rotnik 077369d960 Update permissions for Repositories 2019-08-09 14:12:59 +02:00
Urban Rotnik f569411bc7 Add TeamRepository model 2019-08-09 14:12:59 +02:00
aignatov-bio 6e5f078dea
Add activities for marvinJS [SCI-3630] (#1950) 
* Add marvinJs activities to step and results

* Add activities for TinyMCE marvinJS assets

* Fix markup
 2019-08-09 09:47:07 +02:00
aignatov-bio b57e79a557
Fix tables (#1963) 2019-08-09 09:41:32 +02:00
Oleksii Kriuchykhin a5d47e75c5 Remove duplicated protocols.js.erb file [SCI-3678] 2019-08-08 14:33:07 +02:00
Oleksii Kriuchykhin d52df56fc4 Fix production build and update packages [SCI-3678] 2019-08-08 14:03:15 +02:00
Oleksii Kriuchykhin 973efa55e1 Merge branch 'master' into ok_SCI_3678 2019-08-08 11:17:07 +02:00
Oleksii Kriuchykhin b4f632dba8 Remove dowload endpoint from assets controller [SCI-3680] 2019-08-07 15:21:41 +02:00
Oleksii Kriuchykhin d942788581 Implement read permissions checks for ActiveStorage controllers [SCI-3680] 2019-08-07 15:21:41 +02:00
Alex Kriuchykhin 328f8dd8a0
Merge pull request #1966 from okriuchykhin/ok_SCI_3681 
Enforce file size limits for direct uploads on S3 [SCI-3681]
 2019-08-07 10:49:05 +02:00
aignatov-bio aa5061a1af
Add custom context menu to TinyMCE images [SCI-3582] (#1944) 
* Add custom context menu to TinyMCE images

* Fix permission check for unsaved objects

* Fix markup
 2019-08-07 10:28:42 +02:00
Oleksii Kriuchykhin 973fc775c0 Enforce file size limits for direct uploads on S3 [SCI-3681] 2019-08-06 17:09:00 +02:00
Oleksii Kriuchykhin f3849e2ece Fix TinyMCE plugings config [SCI-3679] 2019-08-06 15:46:55 +02:00
Oleksii Kriuchykhin eaf9d59819 Merge branch 'activestorage_migration' into ok_SCI_3679 2019-08-06 15:27:31 +02:00
Urban Rotnik 50045b9796
Merge pull request #1956 from urbanrotnik/ur-sci-3733-add-button-new 
Add additional NewStep button [SCI-3733]
 2019-08-06 15:26:51 +02:00
Oleksii Kriuchykhin 423528933e Switch to global JS constants [SCI-3679] 2019-08-06 15:06:19 +02:00
Anton Ignatov e2e876b2a3 Merge branch 'activestorage_migration' into ai-sci-3728-fix-active-storage-tests 2019-08-05 13:51:04 +02:00
Jure Grabnar a9d67ba151
[SCI-3588] Security precautions for omniauth CVE-2015-9284 (#1961) 
[SCI-3588] Security precautions for omniauth CVE-2015-9284
 2019-08-05 13:14:21 +02:00
Jure Grabnar d9ce3e5e8e
[SCI-3674] Remove width on comments (#1954) 
[SCI-3674] Remove width on comments
 2019-08-05 13:14:03 +02:00
aignatov-bio f0b7771e19
Merge pull request #1943 from aignatov-bio/ai-sci-3629-add-metadata-to-protocol-repository-import-export 
Fix protocol copy, add metadata to assets [SCI-3629]
 2019-08-05 12:55:16 +02:00
Anton Ignatov feadd940f7 Fix duplicate for TinyMCE model 2019-08-05 11:33:49 +02:00
Anton Ignatov 24da016465 Reuse duplicate file method 2019-08-05 11:30:36 +02:00
Oleksii Kriuchykhin a2fe4bee94 Add text extraction from MarvinJS for search [SCI-3643] 2019-08-02 15:17:28 +02:00
Jure Grabnar d9f6c249f9 Fix CVE-2015-9284 omniauth security precautions 
Close SCI-3588
 2019-07-31 16:59:38 +02:00
Jure Grabnar 6546bd1532 Add omniauth-rails_csrf_protection gem 
Close SCI-3588
 2019-07-31 16:05:06 +02:00
Jure Grabnar b12403b769 Add comment name fix as Urban suggested 2019-07-31 09:23:22 +02:00
Jure Grabnar 971f52b4b0
RTE image in search does not have preview (#1952) 
RTE image in search does not have preview
 2019-07-30 07:44:54 +02:00
Jure Grabnar dbebde3370
Merge pull request #1953 from jbargu/jg_sci_3673 
Revalidate internal dimension when dragging
 2019-07-30 07:44:36 +02:00
Anton Ignatov 7e379d4e0d Fix download file 2019-07-29 10:24:31 +02:00
Anton Ignatov f35f4886a3 Fix markup 2019-07-29 10:18:34 +02:00
Anton Ignatov a4b2825258 Fix tests for active storage 2019-07-26 15:58:51 +02:00
Anton Ignatov 618f0cc334 Fix tests for services 2019-07-26 14:16:44 +02:00
Urban Rotnik 7626d43ee4
Merge pull request #1947 from urbanrotnik/ur-sci-3707-archived-results-not-in-row 
Fix for archived results in row [SCI-3707]
 2019-07-26 13:03:34 +02:00
Oleksii Kriuchykhin ccf76b8531 Move repository_datatable to JS file [SCI-3679] 2019-07-26 13:00:25 +02:00
Anton Ignatov 84fe10df47 Fix tests for models and tema import/export 2019-07-26 12:40:36 +02:00
Urban Rotnik 4699ba718a Fix showing errors 2019-07-26 11:32:51 +02:00
Urban Rotnik 88fbd6c0af Fix for archived results in row 2019-07-26 11:16:53 +02:00
Urban Rotnik aa36d93bea Add additional NewStep button 2019-07-26 11:01:36 +02:00
Oleksii Kriuchykhin 5e65b07bdc Implement DirectUpload for Steps, Results and Inventories [SCI-3679] 2019-07-25 18:00:24 +02:00
Jure Grabnar 39fbd18316 Remove width on commments 
Closes SCI-3674
 2019-07-25 16:46:27 +02:00
Jure Grabnar a579328614 Revalidate internal dimension when dragging 
Close SCI-3673
 2019-07-25 16:37:15 +02:00
Jure Grabnar d3a5651998 Add remaining missing description in global search 
Close SCI-3723
 2019-07-25 14:27:53 +02:00
Jure Grabnar 11b3b7b4e9 Fix search description for step 2019-07-25 14:15:45 +02:00
Jure Grabnar f44404a1f8
Merge pull request #1946 from jbargu/jg_sci_3704 
Fix Handsontable error when generation report
 2019-07-25 11:28:46 +02:00
Jure Grabnar 06657dbdf6
Add spinner when editing image annotation (#1948) 
Add spinner when editing image annotation
 2019-07-25 11:28:13 +02:00
Urban Rotnik 1b9db2f61e Fix for file annotating on Safari 2019-07-24 14:16:29 +02:00
Jure Grabnar cdad167be2 Add spinner when editing image annotation 
Close SCI-3710
 2019-07-23 15:02:33 +02:00
Jure Grabnar 5847a8b05c Convert HOT table after it was initialized 
Closes SCI-3704
 2019-07-23 14:17:22 +02:00
Anton Ignatov 3b7f715e0b Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-22 13:09:17 +02:00
Anton Ignatov b762ae6a90 Copy protocol assets through tempfile 2019-07-19 15:23:34 +02:00
Anton Ignatov 0702dacc5b Security fixes 2019-07-19 14:10:38 +02:00
aignatov-bio 4fe0227d8c
Add metadata for .eln assets (#1942) 2019-07-19 10:53:33 +02:00
aignatov-bio 2fae7d8208
Fix issue in report (#1941) 2019-07-19 10:37:44 +02:00
Anton Ignatov ad7130d3b2 Simplify TinyMCE assets for MarvinJS 2019-07-19 09:27:03 +02:00
Anton Ignatov b5a35f583a Fix protocol copy, add metadata to assets 2019-07-18 15:39:08 +02:00
Anton Ignatov bdc2dbbac1 Simplify image creation 2019-07-18 14:29:24 +02:00
Anton Ignatov d79fec3345 Move TinyMCE logic to correspond controller 2019-07-16 15:51:44 +02:00
Anton Ignatov 03a45d7dd8 Fix markup 2019-07-16 13:42:39 +02:00
Anton Ignatov 1e8663548e Add MarvinJS assets to TinyMCE 2019-07-16 13:40:54 +02:00
Anton Ignatov 3339c1fbbf Add MarvinJS to Result and TinyMce MarvinJS refactor 2019-07-15 17:17:14 +02:00
Miha Mencin 47d3315d82 SCI-3702 revert the fix and use local variables 2019-07-15 16:20:39 +02:00
Miha Mencin 1c84e46a21 Revert "SCI-3702 replace _to_text with _to_html" 
This reverts commit 93b7c472ac.
 2019-07-15 16:18:26 +02:00
Miha Mencin 93b7c472ac SCI-3702 replace _to_text with _to_html 2019-07-15 16:16:41 +02:00
aignatov-bio a8623002e6
Small UI changes [SCI-3699] (#1935) 
* Small ui changes

* Markup fix

* Add class for addons
 2019-07-15 13:28:20 +02:00
aignatov-bio 3c32fe0895
Fix formulas in table report (#1934) 2019-07-15 13:27:27 +02:00
Urban Rotnik 795c355f01
Merge pull request #1915 from urbanrotnik/ur-sci-3531-tests-for-step-components 
Add tests for StepComponents [SCI-3531]
 2019-07-15 13:25:36 +02:00
Miha Mencin 8d3b94d7bc
Merge pull request #1931 from okriuchykhin/ok_SCI_3700 
Improve permissions checks for reports [SCI-3700]
 2019-07-15 12:34:59 +02:00
Jure Grabnar eb615ea8dd
[SCI-3670] Show protocols at external protocols tab (#1933) 
[SCI-3670] Show protocols at external protocols tab
 2019-07-15 11:24:01 +02:00
aignatov-bio 894e201e1b
Fix big file issue in step attachments [SCI-3682] (#1919) 
* Fix big file issue in step atachments

* Fix markup
 2019-07-15 11:00:01 +02:00
Jure Grabnar d210b0b152 Trigger loading of latest publications when page is loaded 
Closes SCI-3670
 2019-07-15 08:52:17 +02:00
Jure Grabnar 015dae1a05 Fix old tests 2019-07-15 08:27:34 +02:00
Jure Grabnar a372d4056d Add last_published protocols.io endpoint 2019-07-14 19:24:53 +02:00
Alex Kriuchykhin 313d2d27b9
Update repository_rows_controller.rb 2019-07-12 17:03:09 +02:00
Urban Rotnik 5cf100a787 Show 'published_on' instead of 'created_on' on external_protocols list 2019-07-12 16:56:07 +02:00
Oleksii Kriuchykhin 1c235aafe5 Improve permissions checks for reports [SCI-3700] 2019-07-12 16:44:15 +02:00
mlorb 5bc8eb7392
Merge pull request #1921 from mlorb/ml-sci-3641 
Fix page redirect and add success flash msg after protocols.io import [SCI-3641]
 2019-07-12 15:52:40 +02:00
Anton Ignatov ba1d6d45ca Fix merging issues 2019-07-12 15:47:15 +02:00
Anton Ignatov ffd415d409 Inital refactor for Assets model 2019-07-12 15:02:06 +02:00
Anton Ignatov 7831b0a089 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 15:00:07 +02:00
Oleksii Kriuchykhin 6166a0dbb0 Fix file result update method [SCI-3695] 2019-07-12 14:42:04 +02:00
Mojca Lorber d07e04e511 Fix dooble flash_alerts load 2019-07-12 14:33:41 +02:00
aignatov-bio 4bae87e3f7
Styling changes in DOCX report [SCI-3633] (#1899) 
* Styling changes in DOCX report

* Update result comments in docx report

* Fix markup
 2019-07-12 13:48:14 +02:00
aignatov-bio 5ca822a7d8
Add archive lables and fix bright colors in RTE fields (#1923) 2019-07-12 11:38:48 +02:00
Anton Ignatov 57a273d5d0 Merge branch 'activestorage_migration' into features/marvinjs-integration 2019-07-12 11:34:41 +02:00
aignatov-bio c6152ccddb
Fix big table issue in ProtocolIo preview (#1927) 2019-07-12 11:17:51 +02:00
aignatov-bio d8d04b89cd
Fix autosave issue in mozzila (#1925) 2019-07-12 11:15:45 +02:00
aignatov-bio 26ef970a1e
Add academy button (#1924) 2019-07-12 11:15:34 +02:00
aignatov-bio 70589126c3
Fix autosave for steps (#1926) 2019-07-12 10:16:49 +02:00
Urban Rotnik d5fbe5ecd7 Fix for safari on external protocols tab 2019-07-11 11:53:49 +02:00
Mojca Lorber f8afc92606 Fix page redirect and add success flash msg after protocols.io import action 2019-07-11 09:50:39 +02:00
aignatov-bio ac7970209c
Add helper for inline JS code (#1916) 2019-07-11 09:31:30 +02:00
Jure Grabnar 5eb197127f Fix relative links in protocolsio iframe 
Closes SCI-3660
 2019-07-10 19:20:40 +02:00
Oleksii Kriuchykhin 64b7a5646a Implement custom document file previewer [SCI-3677] 2019-07-10 14:37:23 +02:00
aignatov-bio 7ac410e573
Fix visual bugs across ProtocolIo [SCI-3671] (#1914) 
* Fix visual bugs across ProtocolIo
 2019-07-10 13:00:32 +02:00
Urban Rotnik b9bec32316 Add tests for StepComponents 2019-07-10 12:48:08 +02:00
Urban Rotnik 0ee2afae29
Merge pull request #1913 from urbanrotnik/ur-sci-3657-log-errors 
Log to console when error occur on ProtocolsImport actions [SCI-3657]
 2019-07-10 09:01:01 +02:00
Urban Rotnik cc3cd43270 Log to console when error occur on ProtocolsImport actions 2019-07-09 15:32:43 +02:00
mlorb 23270393b0
Merge branch 'master' into ml-sci-3634 2019-07-09 14:38:00 +02:00
Mojca Lorber 7bb82e2fc2 Fix eternal protocols tab visuals 2019-07-09 14:35:40 +02:00
aignatov-bio 1a75a31647
Remove webinar button [SCI-3664] (#1906) 
* Remove webinar button

* Remove constants and i18n
 2019-07-09 14:01:09 +02:00
aignatov-bio fc78d8f401
Fix tooltip position (#1909) 2019-07-09 14:00:53 +02:00
Urban Rotnik 10639deb97 Strip tags for table's content 2019-07-09 13:41:52 +02:00
Urban Rotnik be77746aef Fix description styling of components 2019-07-09 13:41:51 +02:00
Urban Rotnik 8411e92fa2 Add linebreak for 'There was a table' message 2019-07-09 10:54:48 +02:00
Oleksii Kriuchykhin a1941a21dc Futher refactoring of old Paperclip methods [SCI-3539] 2019-07-09 10:28:15 +02:00
Jure Grabnar 05f2210002
SCI-3650, SCI-3655 Fix empty file name, empty description when… (#1892) 
SCI-3650, SCI-3655 Fix empty file name, empty description when parsing tables
 2019-07-09 10:24:03 +02:00
aignatov-bio c8b0d87054
Fix global links in reports (#1894) 2019-07-09 09:35:43 +02:00
aignatov-bio 4fe3119bd2
Fix step description RTE images in report preview (#1888) 2019-07-08 15:23:44 +02:00
mlorb 7272d838b6
Merge pull request #1875 from mlorb/ml-sci-3618 
Remove unassign_user_from_project notification…[SCI-3618]
 2019-07-08 15:23:06 +02:00
aignatov-bio 01a01157d3
Replace Handson table in reports with simple table [SCI-3636] (#1895) 
* Replace handsone table in reports with simple table

* Add result tables
 2019-07-08 13:19:12 +02:00
Jure Grabnar bdd1ca2a65
Merge pull request #1908 from jbargu/jg_sci_3587 
[SCI-3587] Endless spinner at file preview
 2019-07-08 13:06:39 +02:00
Jure Grabnar ae7da78bff
Merge pull request #1897 from jbargu/jg_sci_3646 
[SCI-3646] Add paging functionality to external protocols
 2019-07-08 13:06:19 +02:00
aignatov-bio 81aef81634
Fix scrol jump when select activtiies in global activities (#1907) 2019-07-08 12:55:35 +02:00
aignatov-bio 6d423ed986
Make Navbar icons bigger [SCI-3663] (#1900) 
* Make Navbar icons bigger
 2019-07-08 12:53:43 +02:00
aignatov-bio 2baca019eb
Remove tooltip from step edit button (#1905) 2019-07-08 12:52:03 +02:00
aignatov-bio 99b1075c28
Fix protcol naming when load multiple protocols (#1904) 2019-07-08 12:51:47 +02:00
aignatov-bio 0d1ec0d4ed
Fix I18n and constants in DOCX report (#1901) 2019-07-08 12:51:26 +02:00
Miha Mencin ab9b7a7429
Merge pull request #1902 from biosistemika/release-1.16.6 
Merge 'release-1.16.6' into 'master'
 2019-07-08 12:49:40 +02:00
Jure Grabnar 0ee0b1c834 Fix file preview not showing in modal when processing is done 
Close SCI-3587
 2019-07-08 12:45:22 +02:00
Alex Kriuchykhin 82708f0124
Merge pull request #1891 from okriuchykhin/ok_SCI_3654 
Fix project page view saving [SCI-3654]
 2019-07-08 11:46:54 +02:00
Oleksii Kriuchykhin 9d926dc956 Refactor TinyMce assets, user avatars, zip files [SCI-3539] 2019-07-05 16:56:05 +02:00
Mojca Lorber 989c10872c Fixes visual bugs on protocols.io and home page 2019-07-04 18:22:51 +02:00
aignatov-bio 88dc2dcdd0
Hot fix for TinyMCE asset permission check (#1896) 
* Hot fix for TimyMCE asset permission check
 2019-07-04 15:59:11 +02:00
Jure Grabnar 0eb09407bc Always scroll to top when searching for new string 2019-07-04 15:38:15 +02:00
Jure Grabnar dc7fee51fa Add Show more protocols functionality to external protocols 
Closes SCI-3646
 2019-07-04 15:35:18 +02:00
Jure Grabnar 4c3df5a67d Change tabs to spaces 2019-07-04 09:43:05 +02:00
Oleksii Kriuchykhin c0c8e0e1a3 Refactor Experiment workflow images [SCI-3539] 2019-07-04 09:33:12 +02:00
Jure Grabnar 20134c9f8a
Features/protocolsio integration (#1893) 
Features/protocolsio integration
 2019-07-03 17:32:20 +02:00
Jure Grabnar 721bb9ab77
SCI-3649 All reagent data from step are not imported (#1881) 
SCI-3649 All reagent data from step are not imported
 2019-07-03 16:54:25 +02:00
Jure Grabnar 6944045bfb Check for empty description before passing to Nokogiri 
Closes SCI-3655
 2019-07-03 16:36:26 +02:00
Jure Grabnar 8866d98512 Fix empty file name on protocols.io 
Closes SCI-3650
 2019-07-03 16:11:51 +02:00
aignatov-bio 09dacf3be2
Fix infinite update for image annotation (#1889) 2019-07-03 15:35:49 +02:00
aignatov-bio d147e8260d
Fix issue with moving protocol in repository (#1887) 2019-07-03 15:35:37 +02:00
Oleksii Kriuchykhin e16cb513e1 Fix project page view saving [SCI-3654] 2019-07-03 15:34:16 +02:00
Miha Mencin 5a437c0a0f coding style fixes 2019-07-03 15:32:55 +02:00
Miha Mencin 964e91e1d2 removi mol weight from general section 2019-07-03 15:16:47 +02:00
Jure Grabnar e965866d57
SCI-3648 Error at importing one protocol without steps (#1883) 
SCI-3648 Error at importing one protocol without steps
 2019-07-03 14:43:49 +02:00
Miha Mencin 669592f62c
Merge pull request #1886 from biosistemika/SCI-3640-fix-safari-search-bar 
SCI-3640 Search line on Safari external protocols page needs update
 2019-07-03 14:18:02 +02:00
Miha Mencin 012b828708 additional filters for blank string when displaying the reagent details 2019-07-03 14:13:55 +02:00
Miha Mencin 1b31f7f30a SCI-3640 set max width of search bar to 50% 2019-07-03 13:16:07 +02:00
Miha Mencin 882e453b9c
Merge pull request #1880 from biosistemika/SCI-3644-hide-import-button 
SCI-3644 Import button is always visible
 2019-07-03 11:50:10 +02:00
Oleksii Kriuchykhin 028e647f4d Upgrade to Rails 5.2.3 [SCI-3651] 2019-07-03 11:15:13 +02:00
Alex Kriuchykhin 48a9db4390
Merge pull request #1882 from jbargu/jg_sci_3590 
Update js-yaml by upgrading rails/webpacker [SCI-3590]
 2019-07-03 11:07:06 +02:00
Miha Mencin 37cc526ac9 fix CR comments 2019-07-03 10:22:59 +02:00
Jure Grabnar 4715e8ec4b Fix building of zero steps protocls 
Close SCI-3648
 2019-07-03 09:34:15 +02:00
Miha Mencin 611c417b43 code review changes 2019-07-03 09:21:41 +02:00
aignatov-bio d2849c88fd
Remove draft after save step (#1878) 2019-07-03 09:18:52 +02:00
aignatov-bio 65cf5e5787
Fix activities menu selector highlight (#1877) 2019-07-03 09:18:41 +02:00
Miha Mencin ab038ffdf7 SCI-3649 adding catalog number, fixing up the design a bit 2019-07-02 19:47:05 +02:00
Miha Mencin 74b4e0d774 SCI-3644 hide the import button and show it only on hover & when appropriate user 2019-07-02 18:24:07 +02:00
Jure Grabnar fc961b570c Comment out index.jsx 
Closes SCI-3590
 2019-07-02 18:07:12 +02:00
Miha Mencin 4efb0b5a4a SCI-3645 added descending sorting by name 2019-07-02 17:42:55 +02:00
aignatov-bio b1a74a893c
Remove strange symbol (#1874) 2019-07-02 11:21:14 +02:00
aignatov-bio 378e91b426
Fix links on search page (#1867) 2019-07-02 11:21:00 +02:00
aignatov-bio 68ebf13bca
Fix tags modal issue (#1856) 2019-07-02 11:20:49 +02:00
Oleksii Kriuchykhin 4ea6b56582 Fix Step and Result file previews [SCI-3539] 2019-07-01 23:30:20 +02:00
Alex Kriuchykhin 7e4852d5aa
Merge pull request #1871 from okriuchykhin/ok_SCI_3511_v2 
Fix TinyMCE editor initialization for step editing [SCI-3511]
 2019-07-01 16:08:36 +02:00
Mojca Lorber 41935a9471 Remove unassign_user_from_project notification and change code to use helper method for assignment notification generation 2019-07-01 13:44:27 +02:00
Anton Ignatov 1f40fa69fc Merge branch 'features/marvinjs-integration' of https://github.com/biosistemika/scinote-web into features/marvinjs-integration 2019-07-01 11:51:27 +02:00
aignatov-bio a08d93376c
Add promo modal when MarvinJS disabled (#1872) 2019-07-01 11:51:13 +02:00
Anton Ignatov c9ae9f056e Merge branch 'okriuchykhin-ok_SCI_3539' into features/marvinjs-integration 2019-07-01 10:44:29 +02:00
aignatov-bio 2793777463
Features/docx report (#1873) 
* Initial setup for docx report

* Add render for project, experiment, my_module

* Implement converter for RTE fields

* Add all report elements

* fix markup

* Change headers, remove empty blocks, refactored repository draw

* Add smart annotations support

* Fix justify fields

* Prepare for addons integration

* Fix markup

* Add comments to GemFile

* Fix TinyMCE error

* Change UI for new report download selector

* Fix file error in inventory cell for docx

* Fix i18n object for header
 2019-07-01 10:14:16 +02:00
Anton Ignatov 390002f40f Merge branch 'ok_SCI_3539' of https://github.com/okriuchykhin/scinote-web into okriuchykhin-ok_SCI_3539 2019-07-01 10:12:26 +02:00
Oleksii Kriuchykhin 2f39b7f22b Fix TinyMCE editor initialization for step editing [SCI-3511] 2019-06-28 12:06:04 +02:00
Jure Grabnar ebbb36cc6d Remove border from the import button 2019-06-28 11:32:47 +02:00
Jure Grabnar 8146a6a42c Assign name = position if protocolsIO step has no name 2019-06-28 11:29:03 +02:00
Anton Ignatov 6be227b2d3 Merge branch 'master' of https://github.com/biosistemika/scinote-web into features/marvinjs-integration 2019-06-28 10:47:38 +02:00
Jure Grabnar 5430fb311d Hound fixes 2019-06-28 10:41:20 +02:00
Jure Grabnar c10428cd2a Fix sorting buttons not applying params 2019-06-28 08:55:27 +02:00
Jure Grabnar 1a9fca87d2 Fix non-existent protocol-card in preview banner 2019-06-28 08:49:12 +02:00
Oleksii Kriuchykhin 5acb16d43e Update Asset helper methods [SCI-3539] 2019-06-28 08:17:09 +02:00
Jure Grabnar 149f45f4fc Hound fixes 2019-06-28 02:31:25 +02:00
Jure Grabnar bc4b07cc0f Refactor hardcoded protocol_source in SearchService 2019-06-28 02:26:31 +02:00
Jure Grabnar 9be4fc2470 Fix tests 2019-06-28 02:19:06 +02:00
Jure Grabnar 7fb696cf48 Fix unclickable import modal 2019-06-28 02:00:05 +02:00
Jure Grabnar 03b81400a9 Add timeout to search 2019-06-28 01:50:52 +02:00
Jure Grabnar 1ccabf62b3 Add preview banner in external protocols 2019-06-28 01:38:33 +02:00
Jure Grabnar 81695665c7 Add hover effect on the card 2019-06-28 00:47:08 +02:00
Jure Grabnar d3afcbed50 Style card view on external protocols 
Closes SCI-3535
 2019-06-28 00:43:05 +02:00
Jure Grabnar 7fb650a125 Change click -> onchange event for sort_by buttons 2019-06-27 22:56:38 +02:00
Jure Grabnar 0a77cedaf8 Fix sorting of external protocols and start showing results 2019-06-27 22:48:56 +02:00
Jure Grabnar 8338892fc6 Update external protocols form to include sort_by 2019-06-27 21:26:28 +02:00
Urban Rotnik 9cb4454537 New implementation for attachments creation 2019-06-27 17:02:06 +02:00
Urban Rotnik 1fd0ca6795 Add steps preview 2019-06-27 16:46:02 +02:00
Urban Rotnik 2761079479 Add modal for import 2019-06-27 16:46:02 +02:00
Jure Grabnar 82fb8ebd2e
Implement protocols.io error handling (#1869) 
Implement protocols.io error handling
 2019-06-27 16:35:55 +02:00
Jure Grabnar 06b8d1fda7 Update ApiClient tests 
Closes SCI-3434
 2019-06-27 14:54:19 +02:00
Jure Grabnar 8a7a2eb097 Add StandardError checking for ProtocolNormalizer 2019-06-27 10:12:00 +02:00
Jure Grabnar d31f978e55 DRY up protocols importer services errors 2019-06-27 10:11:36 +02:00
Jure Grabnar 86bc69e510 Simplify V3 errors structure 2019-06-27 09:42:21 +02:00
Jure Grabnar 7d71608166 Add spinner to external preview 2019-06-26 19:43:35 +02:00
Mojca Lorber 9fd83d54a0 Put network error handeling into api and refactor errors 2019-06-26 14:04:03 +02:00
Oleksii Kriuchykhin ba2daede0b Add migration scripts [SCI-3539] 2019-06-24 15:17:42 +02:00
aignatov-bio 83bc9eb22f
Merge pull request #1839 from aignatov-bio/ai-sci-3369-activity-for-edited-image-annotation 
Adding new activities for image editing [SCI-3369]
 2019-06-24 10:31:39 +02:00
aignatov-bio 57e0478b81
Merge pull request #1855 from aignatov-bio/ai-sci-3583-fix-table-header-in-report 
Fix handsontable [SCI-3583]
 2019-06-24 09:39:35 +02:00
aignatov-bio 81c76fb112
Merge pull request #1854 from aignatov-bio/ai-sci-3586-comment-counter-not-updated 
Fix comments counter for zero comments [SCI-3586]
 2019-06-24 09:39:22 +02:00
aignatov-bio 8ec6802b19
Merge pull request #1853 from aignatov-bio/ai-sci-3581-too-long-protocol-name-in-task 
Trunc long protocol name on task page [SCI-3581]
 2019-06-24 09:39:07 +02:00
Anton Ignatov ab73987245 improve connector perfomance 2019-06-23 00:48:50 +02:00
Anton Ignatov 31c6802a06 Add support for marvinjs on service 2019-06-23 00:09:49 +02:00
Anton Ignatov 8240c8baad Initial refactoring for remote api support 2019-06-22 01:51:59 +02:00
Anton Ignatov 7e5c39d3e4 Merge branch 'master' into features/marvinjs-integration 2019-06-21 14:51:45 +02:00
Anton Ignatov 76e09a2a3d Clear TinyMce autosave after manual save 2019-06-21 14:21:03 +02:00
Anton Ignatov dfece85ea1 Fix handsone table 2019-06-21 11:16:44 +02:00
Anton Ignatov 57ef9573f2 Fix comments counter for zero comments 2019-06-21 10:43:41 +02:00
Anton Ignatov bc98cac9cc Trunc long protocol name on task page 2019-06-20 15:28:15 +02:00
Alex Kriuchykhin db7c6435b3
Merge pull request #1851 from okriuchykhin/ok_SCI_3436 
Implement saving of attachments ordering on steps [SCI-3436]
 2019-06-20 11:31:15 +02:00
Anton Ignatov df344f4d03 Merge branch 'master' into ai-sci-3369-activity-for-edited-image-annotation 2019-06-20 09:43:53 +02:00
Anton Ignatov 3069ec8dd2 Add check for edit permission 2019-06-20 09:43:23 +02:00
Jure Grabnar b2b752fcf8 Fix hound complaints 2019-06-19 23:37:04 +02:00
Jure Grabnar fcd42a4178 Fix border radius around active sort button 2019-06-19 22:59:30 +02:00
Jure Grabnar b3c3b68dc2 Add external preview to External Protocols tab 
Closes SCI-3563
 2019-06-19 22:54:20 +02:00
Anton Ignatov a843a016a0 Fix markup and naming 2019-06-19 15:19:47 +02:00
Oleksii Kriuchykhin f2b617ac12 Fix code formatting [SCI-3436] 2019-06-19 14:23:12 +02:00
Oleksii Kriuchykhin ae1a63037b Raise an exception if required methods for ViewableModel are not implemented [SCI-3436] 2019-06-19 14:17:17 +02:00
Anton Ignatov dae5a661c9 Merge branch 'master' of https://github.com/biosistemika/scinote-web 2019-06-19 14:11:51 +02:00
aignatov-bio 83b9efd7dd Fix right floating images in RTE editor (#1842) 2019-06-19 14:06:33 +02:00
aignatov-bio 609c408c77 Fix error on new step saving command (#1845) 2019-06-19 14:06:25 +02:00
aignatov-bio 5734d0cdd7 Fix TinyMCE field selector for steps (#1844) 2019-06-19 14:06:16 +02:00
aignatov-bio 4ddcbe5d75 Fix user permission for recent protocols (#1843) 2019-06-19 14:06:02 +02:00