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6949 commits

Author SHA1 Message Date
zmagod
fa08b861d0 fixed experiments archive bug 2016-08-18 10:55:29 +02:00
Jure Grabnar
6879521a75 Add missing .experiment to can_unlink_protocol 2016-08-18 10:48:44 +02:00
zmagod
6bb8d075e0 truncate asset name in task step and result [fixes SCI-294] 2016-08-18 09:22:12 +02:00
zmagod
072f816286 refactor restore_after_tutorial function 2016-08-18 08:55:40 +02:00
zmagod
f2ee5d73a0 fixed project tutorial bug 2016-08-18 08:53:34 +02:00
Zmago Devetak
b6ccecf478 Merge pull request #69 from ZmagoD/zd_SCI_335 
cleans experiment form report if moved [fixes SCI-335]
 2016-08-18 08:37:09 +02:00
Jure Grabnar
c3074e91de Fix activity in first time generator 2016-08-18 08:33:08 +02:00
mlorb
36d24523b4 Merge pull request #61 from biosistemika/ml_sci_291 
fixes dissapearance of sample type/group when editing samlpe or adding new sample [SCI-291]
 2016-08-18 08:25:31 +02:00
Zmago Devetak
4897e2da0c Merge pull request #68 from ZmagoD/zd_SCI_330 
Zd sci 330
 2016-08-18 08:10:20 +02:00
Zmago Devetak
f2e08db106 Merge pull request #67 from ZmagoD/zd_SCI_337 
Zd sci 337
 2016-08-18 08:06:38 +02:00
Zmago Devetak
d17af4e898 Merge pull request #66 from ZmagoD/zd_SCI_331 
adds active class to experiment name in sidebar [fixes SCI-331]
 2016-08-18 08:06:03 +02:00
Matej Zrimšek
4ad384df5a Fixed hound alerts. 2016-08-17 21:02:05 +02:00
Matej Zrimšek
27a9dac412 File permissions corrected, with some refactoring. 2016-08-17 18:23:24 +02:00
Matej Zrimšek
e4a6a3944e Added deleting of files on S3 server when editing/removing a file. Some refactoring. 2016-08-17 18:13:35 +02:00
Matej Zrimšek
ccdccc5cf1 Changed file uploding to work properly with multiple files and be user friendly in case of errors. Some function names refactoring. 2016-08-17 18:11:13 +02:00
Matej Zrimšek
854ef0d227 Special characters caused error [fixes SCI-315]. 2016-08-17 18:10:47 +02:00
Matej Zrimšek
c87ba5b45c Multiple files upload handling and user experience improved. Spinner now also prevents user from accidentally leaving page. 2016-08-17 18:10:32 +02:00
Matej Zrimšek
951cf67b3d A lot of file uploading edge cases considered. File uploading is now actually redirected to S3 server, as before was not. Error functions changed and error output format specified, which should be used consistently throughout the application. Some other refactoring. 2016-08-17 18:08:21 +02:00
Matej Zrimšek
b70f49f4e0 Some additional refinements. 2016-08-17 18:00:04 +02:00
Matej Zrimšek
86880f0299 Additional changes, refactoring and improvements. 2016-08-17 17:57:54 +02:00
Matej Zrimšek
01aad1764c Some hotfixes to previous commit. Client-side file validation added (except file type validation). Some refactoring. 2016-08-17 17:54:45 +02:00
Matej Zrimšek
e2f94caa96 Step creation is now completelly validated on client-side also, to avoid front-end problems after server-side validation. This was needed as lots of issues were caused by this. Also step creation user experience is enriched and refactoring of related code was done. 2016-08-17 17:54:06 +02:00
Jure Grabnar
78cf4f396e render_403 and 404 now return true 
To prevent any: render_403 and return type of bugs
 2016-08-17 15:46:30 +02:00
Jure Grabnar
77f75fdeb6 Delete module from canvas when moving 2016-08-17 15:46:30 +02:00
Jure Grabnar
0cdea0b51a Add modal for moving task on canvas 2016-08-17 15:46:30 +02:00
zmagod
c27c6c19e5 cleans experiment form report if moved [fixes SCI-335] 2016-08-17 15:21:53 +02:00
zmagod
9fd68c7bd5 fixes 'new experiment' button bug on smaller screens 2016-08-17 14:27:59 +02:00
zmagod
ca0ba1403d set flask icon to experiment [fixes SCI-330] 2016-08-17 14:17:29 +02:00
zmagod
cc2ed32ccb fixes canvas bug when no actions are available for the viewer 2016-08-17 13:29:22 +02:00
zmagod
6c5cc8aac9 fixes notification [fixes SCI-337] 2016-08-17 13:17:40 +02:00
zmagod
8d69ca0b88 adds active class to experiment name in sidebar [fixes SCI-331] 2016-08-17 11:21:48 +02:00
zmagod
d557f3249f Adds single tasks to the experiment img [fixes SCI-329] 2016-08-17 11:13:49 +02:00
Zmago Devetak
da735a51f4 Merge pull request #62 from ZmagoD/zd_SCI_318 
Zd sci 318
 2016-08-17 10:01:10 +02:00
Zmago Devetak
13697e8688 Merge pull request #58 from ZmagoD/zd_SCI_74 
Filter search query for special chars [fixes SCI_74]
 2016-08-17 10:00:47 +02:00
zmagod
4293f9c267 Merge branch 'zd_SCI_271' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_271 2016-08-17 09:58:29 +02:00
zmagod
850f5d8dad fixing hound alerts 2016-08-17 09:44:23 +02:00
zmagod
7abc8f3a90 Merge branch 'master' into experiment-level 2016-08-17 09:28:35 +02:00
zmagod
76dd4bc90a fixed protocol status bar [fixes SCI-318] 2016-08-16 10:47:23 +02:00
Zmago Devetak
762b805651 Merge pull request #55 from ZmagoD/zd_papperclip_migration_bug 
fixes migration error
 2016-08-16 10:44:53 +02:00
Zmago Devetak
9b97dad03d Merge pull request #54 from ZmagoD/zd_SCI_39 
fixes loading samples error in blank project
 2016-08-16 10:44:35 +02:00
Jure Grabnar
275106c27c Add check for empty projects on move experiments 2016-08-16 10:20:36 +02:00
Mojca Lorber
7dc0c3672a fixes dissapearance of sample type/group when adding/editing new sample 2016-08-16 10:17:29 +02:00
Jure Grabnar
c16eed5e63 Add missing dropdown_actions.js 2016-08-16 09:48:19 +02:00
zmagod
5e647f62d5 changed import label [fixes SCI-317] 2016-08-16 09:34:04 +02:00
Jure Grabnar
a29b56b0bd Even more candy for our dog 2016-08-16 09:15:29 +02:00
Jure Grabnar
b25a7758db Give a candy to our special dog 2016-08-16 09:10:45 +02:00
Jure Grabnar
042a33f2c7 Add activity for moving 2016-08-16 08:49:24 +02:00
Jure Grabnar
e55c66b3d0 Add query for moveable projects 2016-08-16 08:47:04 +02:00
zmagod
852fe499fb clean up linked protocol 2016-08-12 16:31:40 +02:00
Jure Grabnar
c387439fb2 Fix projects query for experiments 
Remove unneeded word in view
 2016-08-12 11:36:52 +02:00
Mojca Lorber
e6f205368b fixes tutorial bug of inappropriate window 2016-08-12 11:33:27 +02:00
Jure Grabnar
d7341d0383 Set actions/routes/view for move experiment 2016-08-12 11:26:18 +02:00
zmagod
c9ff249067 fixed hound alert 2016-08-12 11:11:52 +02:00
zmagod
6c7cfb4467 filter search query for special chars [fixes SCI_74] 2016-08-12 11:08:51 +02:00
Jure Grabnar
555ed05ae6 Refactor/DRY dropdown actions code for experiment 2016-08-12 10:18:35 +02:00
mlorb
6b17385f3a Merge pull request #56 from biosistemika/ml_sci_302 
fixes problem with split table when generating pdf report [SCI-302]
 2016-08-12 08:55:10 +02:00
mlorb
f3163ea7ce visual corrections 2016-08-12 08:54:14 +02:00
Jure Grabnar
9173c83502 Select current project in clone modal 2016-08-11 17:20:06 +02:00
Jure Grabnar
3c36293770 Add activity for cloning experiment 2016-08-11 17:00:33 +02:00
Jure Grabnar
5c40d04eb2 Add missing clone modal 2016-08-11 16:59:56 +02:00
Jure Grabnar
2f6ccac3bc Add unique experiment name and copy image when cloning 2016-08-11 16:58:31 +02:00
Jure Grabnar
6e8e9ecf21 Fix activities and the dreaded no project for modules error 2016-08-11 16:57:29 +02:00
zmagod
d1f6a0f58d fixed hound 2016-08-11 16:24:44 +02:00
zmagod
701c26a2dd fixed canvas edit and samples tutorial [fixes: SCI-271] 2016-08-11 16:21:55 +02:00
zmagod
a128815122 fixed tutorial tasks on canvas 2016-08-11 16:06:51 +02:00
Mojca Lorber
94915a9ba7 fixes problem with splitted table when generating pdf report [SCI-302] 2016-08-11 15:24:18 +02:00
Jure Grabnar
3b259d34b0 Basic cloning of experiment works 
Still missing:
- cloning of assets
- cloning of experiment image
 2016-08-11 15:13:36 +02:00
zmagod
2e1d81a985 fixed project archive in tutorial 2016-08-11 12:40:16 +02:00
Mojca Lorber
b350dff826 fixes problem with splitted table when generating pdf report [SCI-302] 2016-08-11 10:42:36 +02:00
Jure Grabnar
7f21ae138a Set clone actions/routes/view 
DRY code for showing AJAX on project#show page
 2016-08-11 09:46:15 +02:00
scibb
32699578ed Merge pull request #52 from biosistemika/bb_canvas_fixes 
Bb canvas fixes
 2016-08-11 09:29:21 +02:00
zmagod
060da59bbb fixes migration error 2016-08-11 09:19:12 +02:00
Jure Grabnar
1ca34a7986 Fix result texts/tables 2016-08-10 15:44:33 +02:00
Jure Grabnar
52e6d7d300 Fix step comments 2016-08-10 15:44:33 +02:00
Jure Grabnar
3e72f29bfd Fix uploading of step assets 2016-08-10 15:44:33 +02:00
Jure Grabnar
d69195a4f6 Fix uploading of result assets 2016-08-10 15:44:33 +02:00
zmagod
c866e90b33 Merge branch 'zd_add_image_to_project_preview' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_add_image_to_project_preview 2016-08-10 11:33:37 +02:00
zmagod
7653f2b9ec fixed hound 2016-08-10 11:26:27 +02:00
Jure Grabnar
b2855d69f6 Fix hound warning 2016-08-10 09:24:06 +02:00
zmagod
deb739efa6 fixes loading samples error in blank project 2016-08-10 09:13:12 +02:00
Jure Grabnar
15d66c7884 Change validation for experiment workimg 2016-08-10 08:58:29 +02:00
Jure Grabnar
7b0f323576 Add expiring URL to experiment img 2016-08-09 16:37:44 +02:00
zmagod
f77e0d4a6e changed workflow image name 2016-08-09 16:27:28 +02:00
zmagod
5583105d8a fixed hound alert 2016-08-09 14:28:55 +02:00
zmagod
5f3a5cb845 fixed project overview 2016-08-09 14:26:08 +02:00
Jure Grabnar
e995165876 Double quotes -> single quotes (#hound) 2016-08-09 13:19:32 +02:00
Jure Grabnar
9f7df0af76 Fix checkbox in experiment reports 2016-08-09 13:13:50 +02:00
zmagod
176aad4c6d fixes multiple graphs rendering 2016-08-09 11:19:07 +02:00
Jure Grabnar
208e85e7e0 Remove archived experiments from reports 2016-08-09 11:17:25 +02:00
Jure Grabnar
1a7a7a1d1a Add info to experiment archive cards 
Also add addtional check for due date on archive experiment
 2016-08-09 11:04:46 +02:00
Jure Grabnar
a0fe31479f Fix permissions for archived experiments 2016-08-09 10:00:44 +02:00
Jure Grabnar
0ca5725f9b Archive/restore of experiments now work 2016-08-08 16:35:45 +02:00
zmagod
1a56396eb5 add workflow image to project overview page [fixes SCI-41] 2016-08-08 16:02:17 +02:00
scibb
696075bf0f smaller grid steps set. In addition enddpoint bug was fixed 
SCI 170, SCI 292'
 2016-08-08 15:18:38 +02:00
Jure Grabnar
5c858ee577 Add missing experiment archive page 2016-08-08 15:04:38 +02:00
Jure Grabnar
2bd74866e0 Fix my_modules archive page 2016-08-08 15:04:02 +02:00
Jure Grabnar
5a023483d7 Prepare views for experiment archive 2016-08-08 14:19:35 +02:00
Jure Grabnar
775a39344c Fix experiment archive permissions 2016-08-08 13:40:08 +02:00
Jure Grabnar
deecbf082c Remove badly merged code 2016-08-08 13:06:20 +02:00
Zmago Devetak
4bd489d29c Merge pull request #46 from ZmagoD/zd_SCI_303 
update sidebar v2 [fixes SCI-303]
 2016-08-08 08:56:01 +02:00
jbargu
3f91e7a476 Merge pull request #47 from biosistemika/jg_explvl_reports 
Update reports with experiment level

[Fixes SCI-35].
 2016-08-08 08:51:23 +02:00
zmagod
520cf2e0cf hound.... 2016-08-08 08:40:24 +02:00
zmagod
e16abe486c fix hound alert 2016-08-08 08:37:22 +02:00
zmagod
756c3c777e styled workflow dots 2016-08-08 08:33:18 +02:00
zmagod
04d171997e Merge branch 'zd_SCI_41' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_41 2016-08-05 15:56:21 +02:00
zmagod
9c5c4f0a3a Merge branch 'zd_SCI_44' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_44 2016-08-05 15:23:01 +02:00
Mojca Lorber
c691ca63e2 fixing houndci-bot comment 2016-08-05 09:47:06 +02:00
Mojca Lorber
5d137324bc moving and targeting .label class 2016-08-05 09:12:17 +02:00
Jure Grabnar
d9702b6964 Remove unneeded new element 2016-08-05 08:36:06 +02:00
Jure Grabnar
2f0dc57ea6 Fix Hounds warning 2016-08-05 08:29:49 +02:00
Jure Grabnar
a25a4354c6 Fix css, #hound. 2016-08-05 08:05:14 +02:00
Jure Grabnar
cafec6a1b4 Fix controls on experiment contents 
Also fix bug with adjencent elements not updating controls.

Fixes SCI-35.
 2016-08-04 16:05:03 +02:00
Jure Grabnar
8b2b134614 Migrate old reports to new experiment level reports 2016-08-04 13:19:46 +02:00
zmagod
a4ec558596 start to implement project overview page 2016-08-04 12:57:33 +02:00
zmagod
f8f87e9540 Feed the Hound 2016-08-03 16:16:09 +02:00
zmagod
45dac782ca update sidebar [fixes SCI-303] 2016-08-03 16:09:45 +02:00
Jure Grabnar
da2a06c999 Fix global sort to work with experiments 2016-08-03 14:59:53 +02:00
zmagod
fd8187370e Feed the Hound part 3 2016-08-03 13:16:51 +02:00
Jure Grabnar
0c51f7bc8b Saving/editing of reports now works 2016-08-03 13:15:40 +02:00
zmagod
9d4a67a5b6 Feed the Hound 2 2016-08-03 13:11:46 +02:00
zmagod
57ac34e9f4 add samples to experiment page [fixes SCI-43] 2016-08-03 12:57:51 +02:00
Jure Grabnar
964b51f84a Add experiment reports element 2016-08-03 12:52:52 +02:00
Jure Grabnar
aedaf2f30a Adding of experiment content now works in reports 2016-08-03 12:52:52 +02:00
Jure Grabnar
5854e72878 Add experiments_contents action 2016-08-03 12:52:52 +02:00
Jure Grabnar
9092dd6914 Replace all occurences of module_elements 2016-08-03 12:52:52 +02:00
Jure Grabnar
ff081cd844 Simplify project contents dialog 2016-08-03 12:52:51 +02:00
Jure Grabnar
dc82830a8f Add checkbox behaviour to experiment contents 2016-08-03 12:52:51 +02:00
Jure Grabnar
3f33ebe59a Fix wrong closure in experiment contents 2016-08-03 12:52:51 +02:00
Jure Grabnar
acc41dae40 Add experiment content report dialog 
Adding still has to be implemented
 2016-08-03 12:52:51 +02:00
Jure Grabnar
41e8c54aa5 Rename _module_element_controls to element_controls 2016-08-03 12:52:06 +02:00
Jure Grabnar
1e334d9075 Remove unneeded "Add new report element" 2016-08-03 12:52:06 +02:00
Jure Grabnar
d82ba163ed Add experiment to report screen 
Only placeholder for now, JS still needs fixing.
 2016-08-03 12:52:06 +02:00
Jure Grabnar
ac708e7497 Remove no module group from reports 2016-08-03 12:52:06 +02:00
Jure Grabnar
797685fbf0 Remove workflows from project content dialog (report) 2016-08-03 12:52:06 +02:00
Jure Grabnar
daca739262 Add new line to selector for readability 2016-08-03 12:52:06 +02:00
Jure Grabnar
598c5a63fd Add experiment level to project report contents modal 2016-08-03 12:52:05 +02:00
zmagod
d11b0b11e9 Feed the Hound 2016-08-03 09:44:05 +02:00
zmagod
caa80642c0 [fixes SCI-304], [fixes SCI-37] 2016-08-03 09:34:10 +02:00
Mojca Lorber
ffa64445df fixes issue SCI-223 2016-08-02 16:30:07 +02:00
Zmago Devetak
43230384b5 Merge pull request #40 from ZmagoD/zd_SCI_261 
Fixed search query [fixes SCI-261]
 2016-08-02 11:44:00 +02:00
zmagod
18d73467c8 fixed hound warning 2016-08-02 11:16:07 +02:00
zmagod
166f907780 fixed search error 2016-08-02 11:10:30 +02:00
zmagod
f184ee3f2d fixing hound warnings 2016-08-02 09:13:30 +02:00
zmagod
9581e2751f fixes samples page for experiment level [fixes SCI-44] 2016-08-02 08:44:07 +02:00
zmagod
6e3ce92348 add checking for step content 2016-08-01 11:23:22 +02:00
Luka Murn
40fe4e54a9 Feed the Hound #2 2016-07-29 16:48:56 +02:00
Luka Murn
ecf5b5a2c1 Feed the Hound 2016-07-29 16:46:25 +02:00
Luka Murn
4d57479cf9 Remove comment 
Closes SCI-38.
 2016-07-29 16:40:42 +02:00
zmagod
95da62adde fixed hound 2016-07-29 16:38:42 +02:00
zmagod
25b99b6570 fixed search [fixes SCI-261] 2016-07-29 16:32:54 +02:00
Luka Murn
8a2b54819a More fixes on secondary navigation 2016-07-29 16:20:35 +02:00
Luka Murn
bed8687dbd Remove some unused commented code 2016-07-29 16:08:30 +02:00
Luka Murn
b085aa1db3 Remove uneccesary project_activities HTML pages 2016-07-29 16:06:35 +02:00
Luka Murn
ed2226c14b Refactor sidebar 2016-07-29 15:58:47 +02:00
Luka Murn
34af50a9d0 Fix breadcrumbs & sidebar so it works 2016-07-29 15:47:41 +02:00
Luka Murn
0f0689eddc Fix permission helper 2016-07-29 11:43:15 +02:00
Luka Murn
4ea86d6aa1 Code style fixes 2016-07-29 10:41:08 +02:00
Luka Murn
edafcaeed6 Move route module_archive_project -> module_archive_experiment 
Also add some new routes, move some templates.
 2016-07-29 10:25:02 +02:00
Luka Murn
ebda92ef05 Add experiments_controller 2016-07-29 10:21:21 +02:00
Luka Murn
1ad265835b Move route canvas_project -> canvas_experiment 2016-07-29 10:08:28 +02:00
Luka Murn
0c75423cc0 Add TODO to project overview page 2016-07-29 09:46:26 +02:00
Luka Murn
b64e200b91 Refactor canvas a lot. 
Also refactor localization files concerning canvas.
 2016-07-28 16:41:10 +02:00
Luka Murn
c8ef3b1899 Fix first time generator 2016-07-28 16:40:51 +02:00
zmagod
e95f518964 refactor canvas_controller, experiments_controller 2016-07-28 16:01:53 +02:00
zmagod
d91aa5c60b fixed translation sting 'name' to 'experiment' 2016-07-28 14:57:47 +02:00
zmagod
23a46d5fb3 added translations to experiment create and edit flash messages 2016-07-28 14:52:11 +02:00
zmagod
352944fc33 added new/edit experiment modals 2016-07-28 14:44:44 +02:00
Luka Murn
1953e295b6 Hotfix for search results bug 2016-07-28 13:29:26 +02:00
zmagod
9d23cfd940 fixed experiment routes 2016-07-28 11:30:34 +02:00
zmagod
c11932b45b fixed layout 2016-07-28 11:00:56 +02:00
zmagod
d16c0fe706 fixed edit canvas 2016-07-28 10:09:05 +02:00
zmagod
54c4051906 added canvas under experiments 2016-07-28 09:01:44 +02:00
zmagod
a17106b883 added experiments controller and fixed sidebar 2016-07-27 16:18:26 +02:00
Zmago Devetak
c869db2506 Merge pull request #35 from ZmagoD/zd_SCI_40 
Edit canvas controller to work with experiments
 2016-07-27 12:11:19 +02:00
zmagod
485d93f8b9 refactor canvas permissions 2016-07-27 11:35:07 +02:00
Jure Grabnar
1a1c4bb68a Remove needless join from MyModuleGroup 2016-07-27 10:18:57 +02:00
zmagod
5c7501a273 added experiments canvas labels in localization file and fixed canvas views 2016-07-26 14:21:59 +02:00
zmagod
0a84ecdfc1 edit canvas controller to work with experiment 2016-07-26 14:02:06 +02:00
Jure Grabnar
77ed1c5fd3 Change invalid references to project in search and shorten lines. 2016-07-26 12:59:37 +02:00
Jure Grabnar
80621c9b6b Add experiment text to all searches related to experiment 2016-07-26 12:26:48 +02:00
Jure Grabnar
690ad0fffa Add a few experiment permissions 2016-07-26 12:26:48 +02:00
Jure Grabnar
3be562bdf6 Add experiment to search results 2016-07-26 12:26:48 +02:00
Jure Grabnar
6d26203796 Add missing target var to result searches 2016-07-26 12:26:48 +02:00
Jure Grabnar
5283027da1 Add missing target var to searches. 2016-07-26 12:26:48 +02:00
Jure Grabnar
0361f006ca Add SearchableModel to Experiment and fix children 2016-07-26 12:26:48 +02:00
Jure Grabnar
49cd8a783d Update first time data generator with experiment. 2016-07-26 12:20:31 +02:00
Zmago Devetak
b13747291e Merge pull request #32 from ZmagoD/zd_SCI_31 
Fixing modules after integrating experiment-level
 2016-07-26 09:18:16 +02:00
zmagod
346bffe08f fixed protocol.rb 2016-07-26 09:17:24 +02:00
zmagod
c27ffa9fbf fixed project_my_module method 2016-07-26 08:44:09 +02:00
Luka Murn
3187843d14 Change updated_by -> last_modified_by 2016-07-25 14:47:13 +02:00
zmagod
6053c782f9 fixed permission_helper [fixes SCI-34] 2016-07-25 12:07:10 +02:00
zmagod
18d66ece56 migrated model related functions to experiment.rb [fixes: SCI-31] 2016-07-25 11:25:10 +02:00
zmagod
426bce48b2 fixed permission_helper 2016-07-25 09:31:40 +02:00
zmagod
b3c61cfa41 fixed project_my_modules method 2016-07-25 09:13:04 +02:00
zmagod
7c9a0bc2bb fixed models 2016-07-22 15:36:48 +02:00
zmagod
389ee7ea43 start fixing modules 2016-07-22 14:31:09 +02:00
Luka Murn
785fb2cba1 Initial migration & changes in ActiveRecords 2016-07-22 10:43:55 +02:00
Luka Murn
076b67620f Migration GitLab -> GitHub 2016-07-21 13:11:15 +02:00
Luka Murn
055298fee8 Initial commit. 2016-02-12 16:52:43 +01:00