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Author SHA1 Message Date
okriuchykhin 02bfd19d1c Merge pull request #385 from okriuchykhin/ok_SCI_102 
Fix XSS on activites and throghout the rest of app [SCI-102]
 2017-01-16 11:41:38 +01:00
Matej Zrimšek 15d7944302 Preventing splitting of the words in the lookup query for # smart annotations. Query on the # is now performed on every character input, before it sometimes just filtered out the old (results count limited) query. Some refactoring of samrt annotations JS. [SCI-884, SCI-889] 2017-01-13 18:51:05 +01:00
Oleksii Kriuchykhin 75031e17b9 Remove double sanitization from views [SCI-102] 2017-01-12 16:54:15 +01:00
Oleksii Kriuchykhin 69b65c27f8 Remove input sanitization in the models [SCI-102] 2017-01-12 16:20:37 +01:00
Oleksii Kriuchykhin 0350f2f792 Add html escaping to name filelds in the views [SCI-102] 2017-01-12 11:03:14 +01:00
zmagod 1840fdb7e5 cleanup js 2017-01-12 09:52:29 +01:00
Oleksii Kriuchykhin 0546716a0b Improve user input sanitization, fix bugs [SCI-102] 2017-01-11 15:50:11 +01:00
zmagod 3a1ec0eb5e refactor [fixes SCI-834] [fixes SCI-837] [fixes SCI-823] [fixes SCI-835] [fixes SCI-836] [fixes SCI-824] 2017-01-11 14:56:47 +01:00
zmagod fc76a4ae6d Merge branch 'smart-annotations' of https://github.com/biosistemika/scinote-web into zd_SCI_834 2017-01-10 14:22:04 +01:00
zmagod 89e8946a47 expand smart annotation 2017-01-10 14:14:21 +01:00
zmagod 6efcf49927 working version of dropdown filter 2017-01-10 14:14:21 +01:00
zmagod 53d20df449 added xregexp 2017-01-10 14:14:21 +01:00
zmagod 94262b56ef prepare data for atwho 2017-01-10 14:14:21 +01:00
Oleksii Kriuchykhin aa2b573278 Enable image preview while editing steps and code style improvements [SCI-694] 2017-01-06 15:58:23 +01:00
Luka Murn 3cdd375a2d Merge pull request #388 from biosistemika/hotfix-1.6.1 
Hotfix 1.6.1
 2017-01-06 11:23:16 +01:00
Luka Murn 488613afcc Add index to users' full name attribute 2017-01-05 16:26:49 +01:00
Luka Murn ef688feb4e Hotfix 1.6.1 
Set confirmed_at to created_at when using no
email confirmations and users sign up by themselves.
 2017-01-05 15:27:18 +01:00
Oleksii Kriuchykhin 0ecb6904d4 Add user input sanitizing in the models [SCI-102] 2017-01-05 13:31:35 +01:00
Luka Murn a78bb79618 Temp commit 2017-01-05 12:07:17 +01:00
Luka Murn 3bee9d2e12 Save an (yet unworking) version of user smart annotations 
Used so other devs can start working on smart annotations.
 2017-01-04 10:54:02 +01:00
zmagod a434649f42 Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-01-03 16:35:25 +01:00
Oleksii Kriuchykhin 4d3e002c81 Add sorting to Project's experiments overview [SCI-361] 2016-12-23 15:40:01 +01:00
zmagod e554fdf805 code refactor 2016-12-21 16:52:15 +01:00
Oleksii Kriuchykhin b537feb8a0 Added large preview [SCI-694] 2016-12-16 17:07:08 +01:00
Zmago Devetak c8631077df Merge pull request #361 from biosistemika/improved-sample-table 
Improved sample table
 2016-12-16 15:37:54 +01:00
zmagod b87246c8c2 cleanup spinner after edit step 2016-12-16 11:10:03 +01:00
Mojca Lorber 69d164da68 add new column on first position 2016-12-15 11:20:40 +01:00
zmagod 6d2fb3b02c Merge branch 'improved-sample-table' of https://github.com/biosistemika/scinote-web into zd_SCI_790 2016-12-14 17:05:00 +01:00
Oleksii Kriuchykhin fa1cf1f04d Better handling of columns deleting with fixing columns ordering [SCI-783] 2016-12-14 15:23:00 +01:00
zmagod 3c1a275510 fixes invited user samples table [fixes SCI-790] 2016-12-13 10:56:13 +01:00
Luka Murn d30a9780f4 Merge branch 'lm-sci-711-fix' of https://github.com/Ducz0r/scinote-web into Ducz0r-lm-sci-711-fix 
Conflicts:
	app/assets/javascripts/samples/sample_datatable.js
 2016-12-12 09:57:37 +01:00
Oleksii Kriuchykhin 274fd63a41 Initial code commit [SCI-779] 2016-12-09 15:21:26 +01:00
zmagod de3099e4d1 removes asset_helper, fixes loading of processed thumbnails in results and steps and when loading protocols from repository 2016-12-09 13:59:49 +01:00
Luka Murn 1a8b141b95 Add delete custom field functionality 2016-12-09 13:49:19 +01:00
Mojca Lorber 0e3526c9ad Merge branch 'mlorb-ml-sci-696' into improved-sample-table 
Conflicts:
	app/assets/javascripts/samples/sample_datatable.js
 2016-12-08 15:44:50 +01:00
zmagod 40fdfef67f setup delayed_paperclip gem 2016-12-08 15:24:14 +01:00
Mojca Lorber 7d88e247fc refactoring 2016-12-08 14:41:35 +01:00
zmagod ac52e643be cleanup direct upload 2016-12-08 11:26:13 +01:00
Nbernot 1eb3ddee53 Token expiration restored to 1 day. 2016-12-08 11:12:24 +01:00
Mojca Lorber 227fe9c284 change to after_create 2016-12-07 17:43:00 +01:00
Mojca Lorber 87dc76f4e3 change to update samples table state after initialize 2016-12-07 17:25:42 +01:00
Mojca Lorber 114a17ff0f change to create 2016-12-07 16:57:17 +01:00
Mojca Lorber 228990f9da fix samples table state, when adding new custom column 2016-12-07 16:37:16 +01:00
Mojca Lorber 195055f9cf change SAMPLES_TABLE_DEFAULT_STATE 2016-12-07 14:51:34 +01:00
Mojca Lorber 39b6fa66fe add SamplesTable for new users 2016-12-07 14:14:32 +01:00
Luka Murn 62353b6c3b Temporary change token expiration 2016-12-06 16:33:32 +01:00
Mojca Lorber 01e75fbbcc create samples table model and migration 2016-12-05 11:08:33 +01:00
zmagod 7725374c42 refactor sample types/groups [fixes SCI-700] 2016-12-02 09:58:35 +01:00
Luka Murn 372b455d7d Merge pull request #332 from Ducz0r/lm-sci-750-751 
Fix inviting users not working
 2016-12-01 15:52:40 +01:00
Luka Murn 6a770f6a7e Fix inviting users not working 
Closes SCI-750, SCI-751.

Probably reopens parts of SCI-746.
 2016-12-01 15:46:37 +01:00
Nejc Bernot c54bd6df82 Added user ids to wopi tokens 2016-12-01 13:48:11 +01:00
Matej Zrimšek 46465060d0 Added automatic sign in with token authentication, needed when signing in from different webpage. [closes SCI-689] 2016-11-30 16:56:56 +01:00
Nejc Bernot cb03ed8384 Users can now have multiple tokens 
A new token is generated whenever an edit or view file is called. Tokens have a TTL of one day.
Also enabled the toggling of both wopi and wopi test mode, using environmental variables.
 2016-11-30 16:48:42 +01:00
Luka Murn 76ec77fce4 Merge pull request #329 from biosistemika/simplify-signup 
Merge simplify-signup into master
 2016-11-30 09:41:20 +01:00
zmagod a2e13441e5 removes create_sample_type modal and related js actions 2016-11-30 09:02:34 +01:00
Oleksii Kriuchykhin d8f8e01a46 Code cleanup, added new image types to whitelist [SCI-736] 2016-11-28 11:13:20 +01:00
Oleksii Kriuchykhin cc0aab2e59 Improve regexp for image whitelisting [SCI-736] 2016-11-28 10:08:54 +01:00
Luka Murn 7658ae264a Add uniqueness to sample_type & sample_group name 
Closes SCI-720.
 2016-11-25 16:15:05 +01:00
Oleksii Kriuchykhin 74f6455a8f Add whitelisting of supported image types [SCI-736] 2016-11-25 16:12:43 +01:00
Mojca Lorber 51abd8907c add switch to toggle email confirmations 2016-11-23 09:49:52 +01:00
Luka Murn 26d04b1f3c Merge branch 'rich-text-formatting' into 'master' 
Conflicts:
	Gemfile.lock
	app/assets/stylesheets/themes/scinote.scss
 2016-11-17 16:39:33 +01:00
Luka Murn 9d3685f872 Merge branch 'gamification' into 'master' 
Conflicts:
	app/controllers/users/invitations_controller.rb
	app/controllers/users/settings_controller.rb
 2016-11-17 16:30:18 +01:00
zmagod e5ba134e83 fixes search 2016-11-16 14:50:06 +01:00
Luka Murn eb4d031b79 Fix destroying of users in relation to notifications 2016-11-15 15:56:32 +01:00
Luka Murn e733da728c Fix a bug where user could be assigned to same project twice 
Closes SCI-675.
 2016-11-15 10:44:32 +01:00
Zmago Devetak 914bd42448 Merge pull request #278 from ZmagoD/zd_search_bug_with_rich_text_editor 
strips the html tags from fearch query
 2016-11-15 10:30:29 +01:00
zmagod 3728a6cef9 fixed sql regex 2016-11-14 12:32:41 +01:00
Oleksii Kriuchykhin ab895ae864 Show only protocols from Protocol Management in users statistics [SCI-658] 2016-11-11 12:14:57 +01:00
Mojca Lorber 3b7af3e66c fix validation logic 2016-11-11 11:42:16 +01:00
zmagod 630724df2b strips the html tags from fearch query 2016-11-11 11:41:23 +01:00
Luka Murn c88f834ba9 Merge pull request #269 from Ducz0r/lm-sci-569 
Add a refactored invite users modal that can be reused throughout application
 2016-11-08 16:57:05 +01:00
zmagod 330afe80dc fixes notification model 2016-11-08 11:46:09 +01:00
mlorb 0793fb9f11 Merge pull request #260 from mlorb/ml_sci_614 
Add notification for removing user from team and removing user from project [SCI-614]
 2016-11-08 11:30:49 +01:00
Luka Murn 0ab62576a2 Add new modal to organization page, remove old modal code 2016-11-07 09:43:10 +01:00
zmagod 3c9bd6f511 enables notification to be extended 2016-11-02 14:44:16 +01:00
Mojca Lorber 749b108928 fix hound 2016-11-02 13:32:15 +01:00
Mojca Lorber a2213e23b3 add notification for removing user from team and removing user from project 2016-11-02 11:52:41 +01:00
Oleksii Kriuchykhin e8d20dfc01 Added additional activities [SCI-605] 2016-11-02 10:43:36 +01:00
Oleksii Kriuchykhin d28edfb488 Added statistics block in users profile [SCI-566] 2016-10-27 13:44:27 +02:00
zmagod e02132578a first run 2016-10-24 20:07:20 +02:00
Matej Zrimšek f2cd9890dd Replaced hardcoded infinity values with constants. Added quotation marks to Ruby string constants in JS. 2016-10-17 11:57:47 +02:00
Matej Zrimšek a6a2a237aa Removed unneeded ERB tags, which caused error. Minor refactoring. 2016-10-17 11:57:47 +02:00
Matej Zrimšek 5966911b92 Fixed Hound alerts. 2016-10-17 11:57:46 +02:00
Matej Zrimšek 0780bd2416 Ruby constants are now automatically available in JS. Refactoring was needed. 2016-10-17 11:57:37 +02:00
Matej Zrimšek a3dfb59558 Added remaining constants. 2016-10-17 11:30:05 +02:00
Mojca Lorber 42f6b679f8 Adding system notifications email function in settings 2016-10-12 11:50:26 +02:00
Oleksii Kriuchykhin 90c853743c Additional fixes to email markup and logic [SCI-443] 2016-10-11 16:43:17 +02:00
Oleksii Kriuchykhin 3f219e1bfe Hound code style fixes [SCI-443] 2016-10-11 16:43:17 +02:00
Oleksii Kriuchykhin 5399033fce Added user settings for email notifications [SCI-443] 2016-10-11 16:43:17 +02:00
Oleksii Kriuchykhin 8dc956010c Initial code commit [SCI-443] 2016-10-11 16:43:17 +02:00
Jure Grabnar 1f67aec258 Prevent destroying protocols when file is edited 
SCI-552 #close
 2016-10-06 16:13:42 +02:00
Luka Murn 56d2240de5 Optimize data query in user_notification.rb 2016-10-05 16:21:13 +02:00
Oleksii Kriuchykhin 8907e54b49 Global notifications index page added [SCI-442] 2016-10-05 15:51:11 +02:00
Oleksii Kriuchykhin 8b5b0723d1 Initial code commit 2016-10-05 15:51:11 +02:00
Zmago Devetak 71ad5bf034 Merge pull request #190 from ZmagoD/zd_SCI_529 
Prepare settings screen for notifications
 2016-10-05 14:54:47 +02:00
zmagod 848beb5d4b minor fix 2016-10-05 09:46:18 +02:00
zmagod d7a4f85ba1 added links to notification project name and task 2016-10-05 09:40:44 +02:00
zmagod a68e7abc57 first run notification settings 2016-10-04 15:52:48 +02:00
Luka Murn 61cb9651c7 Merge pull request #188 from biosistemika/global-notifications 
Global notifications
 2016-10-04 08:30:50 +02:00
zmagod c9bbab1004 added html_safe to outputed message, hide notifications number when dropdown is toggled, clear all unseen notification form count when the dropdown is toggled, generate notification only to other users 2016-10-03 20:31:00 +02:00
zmagod 0d23f05698 Merge branch 'global-notifications' of https://github.com/biosistemika/scinote-web into zd_SCI_440 2016-10-03 16:14:22 +02:00
Zmago Devetak 91c7d8a952 Merge pull request #176 from ZmagoD/zd_SCI_474 
Unify the comments
 2016-10-03 15:26:17 +02:00
zmagod ea17182372 generate notifications [fixes SCI-440] 2016-10-03 11:37:29 +02:00
zmagod 2ee02ec472 mark all seen notifications 2016-10-03 08:20:23 +02:00
Jure Grabnar 1e14955ade Prevent deleting asset on step update 2016-10-01 18:47:05 +02:00
Jure Grabnar d9fa882d6a Add check for locked files on step delete 2016-10-01 14:51:55 +02:00
Jure Grabnar 5c9e995e56 Don't delete asset on locked 2016-10-01 13:23:04 +02:00
Jure Grabnar a6ebff06a7 Add error message to wopi discovery 
Fix ambigious open call
 2016-09-30 10:39:14 +02:00
Luka Murn f70829d1a9 Merge pull request #179 from okriuchykhin/ok_SCI-380 
Fixes ordering of checklist items in search results [SCI-380]
 2016-09-30 08:28:07 +02:00
Jure Grabnar ff47f29dc2 Add wopi file activity 
SCI-393 #close
 2016-09-29 16:16:42 +02:00
zmagod e1a1b93d44 fixed migrations 2016-09-29 14:49:58 +02:00
Jure Grabnar ed8df3cc62 Add favicon url to iframe 2016-09-29 12:19:29 +02:00
Jure Grabnar 3bc683be8f Fix access_token_ttl calculation 2016-09-29 10:57:08 +02:00
zmagod cab1e9b521 start implement toolbar view 2016-09-28 16:03:52 +02:00
zmagod 485497334d generated notification related migrations and model tests 2016-09-28 14:18:52 +02:00
Jure Grabnar 5aea0fbb19 Refactor the rest of WOPI logic from Nejc 2016-09-28 09:33:44 +02:00
Jure Grabnar b51f2a3027 Add basic WOPI proof checking 
Still missing validation of timestamp.
Remove web_console gem for testing.
Add relevant tests from manual for WOPI proof.
 2016-09-28 09:33:44 +02:00
Nejc Bernot 1b260785ec First working version of office integration 
Only works on scinote-preview
 2016-09-28 09:33:44 +02:00
Nejc Bernot b2b1d5a8f5 Initial commit of WOPI integration 2016-09-28 09:33:44 +02:00
Oleksii Kriuchykhin 366a49f3a1 Fixes ordering of checklist items in search results [SCI-380] 2016-09-27 13:00:51 +02:00
zmagod 02bfa1949e fixed project comments 2016-09-27 09:00:02 +02:00
zmagod 30a8f52216 generate new experiment img after task restored [fixes SCI-465] 2016-09-26 09:48:49 +02:00
okriuchykhin a7f3f793c8 Merge pull request #161 from okriuchykhin/ok_SCI-380 
Fixes issue with reordering of checklist items [fixes SCI-380]
 2016-09-23 10:37:56 +02:00
mz3944 cde7f3805f Merge pull request #165 from mz3944/mz_replace_hardcoded_values_with_constants_v2 
Added missing validation for protocol description.
 2016-09-22 17:36:18 +02:00
Oleksii Kriuchykhin 841e495234 Fix brace position [fixes SCI-380] 2016-09-22 16:48:15 +02:00
Matej Zrimšek 09405c667e Added missing validation for protocol description. [SCI-408] 2016-09-22 15:52:12 +02:00
Oleksii Kriuchykhin 0dd1196ae5 Fixes issue with move of experiments between projects [fixes SCI-400] 2016-09-22 15:10:15 +02:00
Matej Zrimšek c614843044 Minor refactoring with hound alert fixes. 2016-09-21 19:48:18 +02:00
Matej Zrimšek 234918a76d Word wrapping and truncating added to whole application [fixes SCI-458]. Fixed some bugs which were related to long/too long text and validations. Modified parts of application to accomodate for longer text limits. 2016-09-21 19:48:18 +02:00
Matej Zrimšek c6a23aab98 Added missing validations for text fields. Added text trimming, which removes spaces from beginning and ending of text. [fixes SCI-408] 2016-09-21 19:37:36 +02:00
zmagod 06b1992e94 Merge branch 'zd_SCI_436' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_436 2016-09-21 19:20:55 +02:00
Oleksii Kriuchykhin 011bb2d910 Fixes issue with reordering of checklist items [fixes SCI-380] 2016-09-21 14:06:47 +02:00
zmagod 42bbc47f5f first working version 2016-09-20 17:06:07 +02:00
zmagod 0ca65aeca5 fixed step comment sorting 2016-09-20 13:31:50 +02:00
zmagod f48553e807 fixed ajax call 2016-09-19 16:12:07 +02:00
Matej Zrimšek ffe6799313 Fixed hound alerts. 2016-09-16 15:57:54 +02:00
Matej Zrimšek c2f0106993 Replaced hardcoded values with unified constants. Minor refactoring. Also front-end error handling was updated accordingly. [fixes SCI-408] 2016-09-16 15:56:44 +02:00
zmagod 938aa32190 js tweaks 2016-09-16 15:22:24 +02:00
mz3944 556238f39f Merge pull request #150 from mz3944/mz_local_file_upload_fix 
URL presigning is now used only when using S3 file uploading (caused …
 2016-09-16 09:17:23 +02:00
Zmago Devetak 7c4a62d138 Merge pull request #139 from ZmagoD/zd_SCI_410 
fixed moved experiment thumbnail [fixes SCI-410]
 2016-09-15 11:58:48 +02:00
zmagod 779b713148 refactor code 2016-09-15 11:55:02 +02:00
zmagod d146970f6b add generate workflow image method for moved modules 2016-09-15 09:32:29 +02:00
Matej Zrimšek 76ff34a8a9 URL presigning is now used only when using S3 file uploading (caused error for local uploading) [fixes SCI-447], along with some refactoring. 2016-09-13 18:56:47 +02:00
zmagod d5c5c55bf2 refactor 2016-09-13 16:32:33 +02:00
zmagod 29a2904513 fixed moving action of workflows and tasks 2016-09-13 14:51:53 +02:00
zmagod 691ae94d2c enabled to delete results in task archive [fixes SCI-370] 2016-09-13 13:26:04 +02:00
zmagod 1b31f8827d set experiment description to 255 2016-09-08 14:35:52 +02:00
Zmago Devetak 1368716aa0 Merge pull request #130 from ZmagoD/zd_SCI_348 
project overview - updating (or creating new) experiment details
 2016-09-08 12:49:35 +02:00
zmagod 487d3e18f4 fixed moved experiment thumbnail [fixes SCI-410] 2016-09-07 07:55:45 +02:00
zmagod b672d85405 fixed error message duplication 2016-09-06 11:46:28 +02:00