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486 commits 43 branches 185 tags 169 MiB
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381 commits

Author SHA1 Message Date
scibb
a76d82d188 delete and edit comments for projects, protocols, results, and workflow elements 2016-08-25 13:51:30 +02:00
zmagod
5fabe06b8d implement first time popup logic 2016-08-25 11:44:49 +02:00
Mojca Lorber
4a5d720724 change position of overview and samples 2016-08-25 11:19:53 +02:00
zmagod
1120ef1407 adds experiment and team to tag search resuls [fixes SCI-381] 2016-08-25 10:40:03 +02:00
mlorb
c38a4e2614 Merge pull request #94 from mlorb/ml_sci_375 
add move experiment instructions [SCI-375]
 2016-08-25 09:45:16 +02:00
Luka Murn
c082bceafc Merge pull request #98 from Ducz0r/lm-sci-385 
Fix bug with linked tasks
 2016-08-25 09:29:50 +02:00
zmagod
f515366d91 fixes workflowing after updating description, fixes canvas bug 2016-08-25 09:11:42 +02:00
mlorb
0a066f436f Merge pull request #96 from mlorb/ml_sci_369 
buttons update on experiment overview [SCI-369]
 2016-08-25 08:54:16 +02:00
zmagod
92bb3dda99 hide last next button 2016-08-25 08:46:11 +02:00
zmagod
dbdbff12eb add experiment level tutorial step [fixes SCI-338] 2016-08-24 19:03:58 +02:00
Luka Murn
3dddffaa34 Fix bug with linked tasks 
This bug was a legacy of experiment level introduction.
Closes SCI-385, SCI-366.
 2016-08-24 17:22:16 +02:00
mlorb
2d90ad1a65 Merge pull request #88 from mlorb/ml_sci_362 
fixes tile size in edit canvas [SCI-362]
 2016-08-24 17:07:11 +02:00
Mojca Lorber
2a897432e1 update buttons on canvas view 2016-08-24 17:00:27 +02:00
jbargu
5c104ac050 Merge pull request #93 from jbargu/jg_sci_378_move_experiment_error 
Fix 404 move experiment error
 2016-08-24 16:35:29 +02:00
Mojca Lorber
d04df349d5 fixes medium and small zoom 2016-08-24 14:18:12 +02:00
Zmago Devetak
0de7ea31ea Merge pull request #90 from ZmagoD/zd_SCI_376 
fixes cloned experiment protocol [fixes SCI-376]
 2016-08-24 14:12:19 +02:00
zmagod
9393a96302 adds edit workflow link if no workflow [fixes SCI-374] 2016-08-24 14:10:50 +02:00
Mojca Lorber
0558d49e26 buttons update on experiment overview 2016-08-24 13:50:25 +02:00
Jure Grabnar
00da7efb44 Merge remote-tracking branch 'origin/jg_SCI_328_moving_workflows' 
Conflicts:
	app/models/experiment.rb

SCI-328 #close
 2016-08-24 13:11:10 +02:00
Zmago Devetak
afaeab492d Merge pull request #87 from ZmagoD/zd_SCI_371 
hide the dropdown if user has no permissions(technician) [fixes SCI-371]
 2016-08-24 11:56:29 +02:00
jbargu
180efac87b Merge pull request #92 from jbargu/jg_exp_overview_navbar_sci_353 
Show whole tree structure for experiment in sidebar
 2016-08-24 11:50:39 +02:00
Jure Grabnar
dff5abf3d9 Fix module moving position not being updated 2016-08-24 11:42:21 +02:00
Mojca Lorber
f554dc6018 add move experiment instructions 2016-08-24 11:36:50 +02:00
Jure Grabnar
3e5e9aed22 Fix 404 on move experiment 
[fixes SCI-378]
 2016-08-24 11:09:03 +02:00
zmagod
27d77bc73f added new permission for dropdown actions 2016-08-24 10:56:30 +02:00
Jure Grabnar
e60533af57 Add whole tree structure for experiment 
SCI-353 #close
 2016-08-24 10:47:30 +02:00
Jure Grabnar
a091571d9c Add consistent links for archive for all entities 2016-08-24 09:14:29 +02:00
Jure Grabnar
0cdb18ffcd Update experiment links on sidebar between actions 2016-08-24 09:05:57 +02:00
Jure Grabnar
a41d851830 Fix secondary navigation for experiment level (overview) 2016-08-24 08:54:02 +02:00
mlorb
5c8d669cac Merge pull request #81 from mlorb/ml_sci_364 
fixes edit experiment [SCI-364]
 2016-08-23 16:49:20 +02:00
Zmago Devetak
396325bd67 Merge pull request #86 from ZmagoD/zd_SCI_365 
changed experiment create redirection [fixes SCI-365]
 2016-08-23 16:30:48 +02:00
Zmago Devetak
9dc7708b73 Merge pull request #85 from ZmagoD/zd_SCI_360 
fixes project overview style and add no description link [fixes SCI-360]
 2016-08-23 16:24:22 +02:00
Zmago Devetak
d67997fa8b Merge pull request #83 from ZmagoD/zd_SCI_347 
Fixes search result link for experiment [fixes SCI-347]
 2016-08-23 16:23:41 +02:00
Zmago Devetak
aa650bbc65 Merge pull request #82 from ZmagoD/zd_SCI_359 
Add plus button at the bottom of project overview page [fixes SCI-359]
 2016-08-23 16:23:20 +02:00
Zmago Devetak
7e2db66f42 Merge pull request #79 from ZmagoD/zd_SCI_345 
Adds font-awesome to pdf [fixes SCI-345]
 2016-08-23 16:22:30 +02:00
Zmago Devetak
65049692ea Merge pull request #78 from ZmagoD/zd_SCI_349 
updating thumbnail
 2016-08-23 16:22:07 +02:00
zmagod
0429816154 deleted commented code 2016-08-23 16:21:11 +02:00
zmagod
2bbb439745 fixes cloned experiment protocol [fixes SCI-376] 2016-08-23 16:15:45 +02:00
Mojca Lorber
126cf0c210 fixes drag connections area 2016-08-23 16:08:05 +02:00
Mojca Lorber
322be64b5f change experiment path 2016-08-23 14:44:22 +02:00
Mojca Lorber
86ed4c18d8 fixes hound 2016-08-23 13:51:20 +02:00
Mojca Lorber
ac68db97b9 fixes tile size in edit canvas 2016-08-23 13:33:10 +02:00
Jure Grabnar
67768c8865 Fix Hound errors 2016-08-23 11:08:10 +02:00
Jure Grabnar
0d56cea3e4 Add placeholders for empty experiments 2016-08-23 10:37:48 +02:00
Jure Grabnar
027193f937 Add links for moving module groups 2016-08-23 10:09:25 +02:00
Jure Grabnar
358f2b1c47 Add moving for newly created modules 2016-08-23 10:00:34 +02:00
zmagod
f918746946 hide the dropdown if user has no permissions(technician) [fixes SCI-371] 2016-08-23 09:26:52 +02:00
zmagod
66b8a3055d changed experiment create redirection [fixes SCI-365] 2016-08-23 09:03:39 +02:00
Jure Grabnar
c0edf51054 Fix bounding box algorithm, can move new modules 2016-08-23 09:00:25 +02:00
zmagod
03a3759cf5 fixes project overview style and add no description link [fixes SCI-360] 2016-08-23 08:52:53 +02:00
Jure Grabnar
8940ba891b Add initial position for moving workflows 2016-08-22 17:52:55 +02:00
Jure Grabnar
667b7671a6 Add connections for moved workflows 2016-08-22 17:26:21 +02:00
zmagod
9a05935067 fixed search result link for experiment [fixes SCI-347] 2016-08-22 15:35:47 +02:00
Mojca Lorber
75c52d20e5 fixes hound 2016-08-22 15:30:27 +02:00
zmagod
8c592753e4 fixes hound 2016-08-22 15:27:11 +02:00
zmagod
bb11999566 adds plus button at the bottom of project overview page [fixes SCI-359] 2016-08-22 15:22:05 +02:00
Mojca Lorber
131d0d269a fixes edit experiment 2016-08-22 15:18:02 +02:00
zmagod
eab05eb9db adds font-awesome to pdf [fixes SCI-345] 2016-08-22 14:40:09 +02:00
zmagod
d38f29d207 set ajax loading of experiments images [fixes SCI-349] 2016-08-22 11:29:19 +02:00
mlorb
ed1cd193ac Merge pull request #77 from mlorb/ml_sci_357 
fixes warning messages when loading a new protocol that is linked with repository [SCI-357]
 2016-08-22 08:56:36 +02:00
mlorb
0832466d20 Merge pull request #76 from mlorb/ml_sci_286 
fixes notifications when creating new sample type or group [SCI-286]
 2016-08-22 08:54:28 +02:00
Mojca Lorber
1c220aba7b delete comment 2016-08-22 08:50:48 +02:00
Jure Grabnar
5bb99adb25 Add frontend logic for moving workflows from canvas 2016-08-19 17:11:17 +02:00
zmagod
b86e67a0d6 refactor initProjectExperiment 2016-08-19 16:38:34 +02:00
Mojca Lorber
fb081be682 fixes warning messages when loading a new protocol that is linked with repository 2016-08-19 16:03:10 +02:00
zmagod
cac5033eba set ajax for workflow img 2016-08-19 15:36:12 +02:00
Zmago Devetak
99aa66cd84 Merge pull request #74 from ZmagoD/zd_SCI_346 
check search input string [fixes SCI-346]
 2016-08-19 14:01:56 +02:00
Mojca Lorber
799cac1238 fixes hound 2016-08-19 13:55:34 +02:00
Jure Grabnar
80498260e5 Add backend for moving task from canvas 2016-08-19 13:53:43 +02:00
Jure Grabnar
f575303d11 Update get_new_position for new canvas size 
SCI-358 #close
 2016-08-19 13:42:28 +02:00
Mojca Lorber
51e0d53b12 remove code duplication 2016-08-19 13:08:35 +02:00
Mojca Lorber
571f5b60f3 fixes notifications appearance and disappearance and content adjustment 2016-08-19 10:48:43 +02:00
Mojca Lorber
5c77167388 update buttons 2016-08-18 16:47:16 +02:00
Mojca Lorber
5695842fe3 fixes notifications when creating sample types and groups 2016-08-18 16:05:15 +02:00
Zmago Devetak
58930f3456 Merge pull request #73 from ZmagoD/zd_SCI_344 
fixes user duplication [fixes SCI-344]
 2016-08-18 13:28:59 +02:00
zmagod
2216a86db5 hound again 2016-08-18 13:27:46 +02:00
zmagod
d3f61bdd18 fixes hound alert 2016-08-18 13:24:44 +02:00
Zmago Devetak
a680b09cc9 Merge pull request #72 from ZmagoD/zd_fix_exl_archive 
fixed experiments archive bug
 2016-08-18 13:16:51 +02:00
Zmago Devetak
fe626a8cb3 Merge pull request #71 from ZmagoD/zd_SCI_294 
Zd sci 294
 2016-08-18 13:16:38 +02:00
zmagod
d62500cb56 check search input string [fixes SCI-346] 2016-08-18 13:14:31 +02:00
zmagod
4b5be7530c fixed task archive 2016-08-18 11:53:57 +02:00
zmagod
da2b9ccf82 fixes user duplication [fixes SCI-344] 2016-08-18 11:26:52 +02:00
zmagod
fa08b861d0 fixed experiments archive bug 2016-08-18 10:55:29 +02:00
Jure Grabnar
6879521a75 Add missing .experiment to can_unlink_protocol 2016-08-18 10:48:44 +02:00
zmagod
6bb8d075e0 truncate asset name in task step and result [fixes SCI-294] 2016-08-18 09:22:12 +02:00
zmagod
072f816286 refactor restore_after_tutorial function 2016-08-18 08:55:40 +02:00
zmagod
f2ee5d73a0 fixed project tutorial bug 2016-08-18 08:53:34 +02:00
Zmago Devetak
b6ccecf478 Merge pull request #69 from ZmagoD/zd_SCI_335 
cleans experiment form report if moved [fixes SCI-335]
 2016-08-18 08:37:09 +02:00
Jure Grabnar
c3074e91de Fix activity in first time generator 2016-08-18 08:33:08 +02:00
mlorb
36d24523b4 Merge pull request #61 from biosistemika/ml_sci_291 
fixes dissapearance of sample type/group when editing samlpe or adding new sample [SCI-291]
 2016-08-18 08:25:31 +02:00
Zmago Devetak
4897e2da0c Merge pull request #68 from ZmagoD/zd_SCI_330 
Zd sci 330
 2016-08-18 08:10:20 +02:00
Zmago Devetak
f2e08db106 Merge pull request #67 from ZmagoD/zd_SCI_337 
Zd sci 337
 2016-08-18 08:06:38 +02:00
Zmago Devetak
d17af4e898 Merge pull request #66 from ZmagoD/zd_SCI_331 
adds active class to experiment name in sidebar [fixes SCI-331]
 2016-08-18 08:06:03 +02:00
Matej Zrimšek
4ad384df5a Fixed hound alerts. 2016-08-17 21:02:05 +02:00
Matej Zrimšek
27a9dac412 File permissions corrected, with some refactoring. 2016-08-17 18:23:24 +02:00
Matej Zrimšek
e4a6a3944e Added deleting of files on S3 server when editing/removing a file. Some refactoring. 2016-08-17 18:13:35 +02:00
Matej Zrimšek
ccdccc5cf1 Changed file uploding to work properly with multiple files and be user friendly in case of errors. Some function names refactoring. 2016-08-17 18:11:13 +02:00
Matej Zrimšek
854ef0d227 Special characters caused error [fixes SCI-315]. 2016-08-17 18:10:47 +02:00
Matej Zrimšek
c87ba5b45c Multiple files upload handling and user experience improved. Spinner now also prevents user from accidentally leaving page. 2016-08-17 18:10:32 +02:00
Matej Zrimšek
951cf67b3d A lot of file uploading edge cases considered. File uploading is now actually redirected to S3 server, as before was not. Error functions changed and error output format specified, which should be used consistently throughout the application. Some other refactoring. 2016-08-17 18:08:21 +02:00
Matej Zrimšek
b70f49f4e0 Some additional refinements. 2016-08-17 18:00:04 +02:00
Matej Zrimšek
86880f0299 Additional changes, refactoring and improvements. 2016-08-17 17:57:54 +02:00
Matej Zrimšek
01aad1764c Some hotfixes to previous commit. Client-side file validation added (except file type validation). Some refactoring. 2016-08-17 17:54:45 +02:00
Matej Zrimšek
e2f94caa96 Step creation is now completelly validated on client-side also, to avoid front-end problems after server-side validation. This was needed as lots of issues were caused by this. Also step creation user experience is enriched and refactoring of related code was done. 2016-08-17 17:54:06 +02:00
Jure Grabnar
78cf4f396e render_403 and 404 now return true 
To prevent any: render_403 and return type of bugs
 2016-08-17 15:46:30 +02:00
Jure Grabnar
77f75fdeb6 Delete module from canvas when moving 2016-08-17 15:46:30 +02:00
Jure Grabnar
0cdea0b51a Add modal for moving task on canvas 2016-08-17 15:46:30 +02:00
zmagod
c27c6c19e5 cleans experiment form report if moved [fixes SCI-335] 2016-08-17 15:21:53 +02:00
zmagod
9fd68c7bd5 fixes 'new experiment' button bug on smaller screens 2016-08-17 14:27:59 +02:00
zmagod
ca0ba1403d set flask icon to experiment [fixes SCI-330] 2016-08-17 14:17:29 +02:00
zmagod
cc2ed32ccb fixes canvas bug when no actions are available for the viewer 2016-08-17 13:29:22 +02:00
zmagod
6c5cc8aac9 fixes notification [fixes SCI-337] 2016-08-17 13:17:40 +02:00
zmagod
8d69ca0b88 adds active class to experiment name in sidebar [fixes SCI-331] 2016-08-17 11:21:48 +02:00
zmagod
d557f3249f Adds single tasks to the experiment img [fixes SCI-329] 2016-08-17 11:13:49 +02:00
Zmago Devetak
da735a51f4 Merge pull request #62 from ZmagoD/zd_SCI_318 
Zd sci 318
 2016-08-17 10:01:10 +02:00
Zmago Devetak
13697e8688 Merge pull request #58 from ZmagoD/zd_SCI_74 
Filter search query for special chars [fixes SCI_74]
 2016-08-17 10:00:47 +02:00
zmagod
4293f9c267 Merge branch 'zd_SCI_271' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_271 2016-08-17 09:58:29 +02:00
zmagod
850f5d8dad fixing hound alerts 2016-08-17 09:44:23 +02:00
zmagod
7abc8f3a90 Merge branch 'master' into experiment-level 2016-08-17 09:28:35 +02:00
zmagod
76dd4bc90a fixed protocol status bar [fixes SCI-318] 2016-08-16 10:47:23 +02:00
Zmago Devetak
762b805651 Merge pull request #55 from ZmagoD/zd_papperclip_migration_bug 
fixes migration error
 2016-08-16 10:44:53 +02:00
Zmago Devetak
9b97dad03d Merge pull request #54 from ZmagoD/zd_SCI_39 
fixes loading samples error in blank project
 2016-08-16 10:44:35 +02:00
Jure Grabnar
275106c27c Add check for empty projects on move experiments 2016-08-16 10:20:36 +02:00
Mojca Lorber
7dc0c3672a fixes dissapearance of sample type/group when adding/editing new sample 2016-08-16 10:17:29 +02:00
Jure Grabnar
c16eed5e63 Add missing dropdown_actions.js 2016-08-16 09:48:19 +02:00
zmagod
5e647f62d5 changed import label [fixes SCI-317] 2016-08-16 09:34:04 +02:00
Jure Grabnar
a29b56b0bd Even more candy for our dog 2016-08-16 09:15:29 +02:00
Jure Grabnar
b25a7758db Give a candy to our special dog 2016-08-16 09:10:45 +02:00
Jure Grabnar
042a33f2c7 Add activity for moving 2016-08-16 08:49:24 +02:00
Jure Grabnar
e55c66b3d0 Add query for moveable projects 2016-08-16 08:47:04 +02:00
zmagod
852fe499fb clean up linked protocol 2016-08-12 16:31:40 +02:00
Jure Grabnar
c387439fb2 Fix projects query for experiments 
Remove unneeded word in view
 2016-08-12 11:36:52 +02:00
Mojca Lorber
e6f205368b fixes tutorial bug of inappropriate window 2016-08-12 11:33:27 +02:00
Jure Grabnar
d7341d0383 Set actions/routes/view for move experiment 2016-08-12 11:26:18 +02:00
zmagod
c9ff249067 fixed hound alert 2016-08-12 11:11:52 +02:00
zmagod
6c7cfb4467 filter search query for special chars [fixes SCI_74] 2016-08-12 11:08:51 +02:00
Jure Grabnar
555ed05ae6 Refactor/DRY dropdown actions code for experiment 2016-08-12 10:18:35 +02:00
mlorb
6b17385f3a Merge pull request #56 from biosistemika/ml_sci_302 
fixes problem with split table when generating pdf report [SCI-302]
 2016-08-12 08:55:10 +02:00
mlorb
f3163ea7ce visual corrections 2016-08-12 08:54:14 +02:00
Jure Grabnar
9173c83502 Select current project in clone modal 2016-08-11 17:20:06 +02:00
Jure Grabnar
3c36293770 Add activity for cloning experiment 2016-08-11 17:00:33 +02:00
Jure Grabnar
5c40d04eb2 Add missing clone modal 2016-08-11 16:59:56 +02:00
Jure Grabnar
2f6ccac3bc Add unique experiment name and copy image when cloning 2016-08-11 16:58:31 +02:00
Jure Grabnar
6e8e9ecf21 Fix activities and the dreaded no project for modules error 2016-08-11 16:57:29 +02:00
zmagod
d1f6a0f58d fixed hound 2016-08-11 16:24:44 +02:00
zmagod
701c26a2dd fixed canvas edit and samples tutorial [fixes: SCI-271] 2016-08-11 16:21:55 +02:00
zmagod
a128815122 fixed tutorial tasks on canvas 2016-08-11 16:06:51 +02:00
Mojca Lorber
94915a9ba7 fixes problem with splitted table when generating pdf report [SCI-302] 2016-08-11 15:24:18 +02:00
Jure Grabnar
3b259d34b0 Basic cloning of experiment works 
Still missing:
- cloning of assets
- cloning of experiment image
 2016-08-11 15:13:36 +02:00
zmagod
2e1d81a985 fixed project archive in tutorial 2016-08-11 12:40:16 +02:00