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3458 commits 70 branches 179 tags 165 MiB
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2742 commits

Author SHA1 Message Date
Matej Zrimšek 4fe669ca9a Removed permissions helper and updated the remaining calls to its methods with the new canaid gem permissions. 2018-02-16 10:53:22 +01:00
Zanz2 b9db39f87d removing last commit 2018-02-16 00:00:53 +01:00
Zanz2 fab9180b7b fixed small oversight 2018-02-15 23:40:09 +01:00
Zanz2 c963c948a1 Fixed main issue, bad step structure now gets fixed to empty template 2018-02-15 23:28:20 +01:00
Zanz2 95501eb046 saving work for later 2018-02-15 20:01:36 +01:00
Zanz2 ad8f93b57f
Merge pull request #991 from Zanz2/missplaced_authors_sci1808 
protocols io authors are now real authors, not user that added the protocol [SCI-1808]
 2018-02-15 16:53:39 +01:00
mlorb 9797712561
Merge pull request #997 from mlorb/ml-sci-2045 
Fix bug with user getting the notification at completing the step, when notifications are switched off [SCI-2045]
 2018-02-15 14:51:40 +01:00
Zmago Devetak e0510ab448
Merge pull request #995 from ZmagoD/zd_SCI_2040 
fixed bug with assigned repository items [fixes SCI-2040]
 2018-02-15 13:05:30 +01:00
Zmago Devetak 0583979cf9
Merge pull request #993 from ZmagoD/zd_SCI_2039 
fixes errors with form id duplicates [fixes SCI-2039]
 2018-02-15 11:10:43 +01:00
zmagod 78e902f316 fixes few Hound alerts 2018-02-15 11:06:59 +01:00
Matej Zrimšek ac5b65b121 Added some additional comments for checking if project is active in permissions. 2018-02-14 14:39:10 +01:00
Matej Zrimšek 09c5e23adf Fixed permission checks for completing step and checking step checkboxes. Disabled turbolinks for comments since it can cause issues. Minor code styling changes. 2018-02-14 14:39:10 +01:00
Matej Zrimšek d571ab2ed8 Fixed comments permissions for experiment level. 2018-02-14 14:39:10 +01:00
Matej Zrimšek 6b1fee4d30 Added/joined repository record assignment to task with sample assignmment to task. 2018-02-14 14:39:10 +01:00
Matej Zrimšek f21c794a95 Fixed permission error when accessing samples page. 2018-02-14 14:39:09 +01:00
Matej Zrimšek 4c87fb4a55 Fixed permission error when restoring task. 2018-02-14 14:39:09 +01:00
Matej Zrimšek 946f516171 Fixed permission error when moving a freshly cloned task. 2018-02-14 14:39:09 +01:00
Matej Zrimšek 68206cb591 Added missing checks for whether task/experiment/project is active for experiment level permissions. Minor code refactoring and restyling. 2018-02-14 14:39:08 +01:00
Matej Zrimšek d55734e501 Added additional permission checks for moving tasks. Added forgotten enclosing tag in a view. 2018-02-14 14:39:07 +01:00
Matej Zrimšek d7108f5a35 Fixed Hound warnings. 2018-02-14 14:39:07 +01:00
Matej Zrimšek 8ef6c8f91f Refactored remaining experiment level permissions (and everything below it). 2018-02-14 14:39:07 +01:00
Matej Zrimšek 879eda2d8f Minor experiment level permissions refactoring. 2018-02-14 14:19:22 +01:00
Matej Zrimšek 0706d16020 Readded module level archive, move, clone and manag permissions. Corrected their usage and add the permissions check in some additional places. 2018-02-14 14:19:22 +01:00
Matej Zrimšek 1182ce5da1 Fixed experiment level permission checks in the controllers. 2018-02-14 14:19:22 +01:00
Matej Zrimšek 7938c2e036 Minor code style changes. 2018-02-14 14:19:22 +01:00
Matej Zrimšek c5b798017e Minor Hound warning fixes. 2018-02-14 14:19:22 +01:00
Matej Zrimšek d6e7ef465c Grouped remaining permissions for experiment, protocol, task, and partially step levels. [SCI-1964] 2018-02-14 14:19:22 +01:00
Matej Zrimšek 854333b0e6 Grouped permissions for experiment with canaid gem (WIP). 2018-02-14 14:19:00 +01:00
Matej Zrimšek 70fdae567c Forgot to add check whether project is active for archive project permission. Added some additional comments for checking if project is active in permissions. 2018-02-14 13:16:32 +01:00
Matej Zrimšek c09ffa4043 Project permissions comments change. 2018-02-14 13:16:32 +01:00
Matej Zrimšek d058c371d4 Readded project archive permission. 2018-02-14 13:16:32 +01:00
Matej Zrimšek 900446557b Fixed mistyped permission checker. 2018-02-14 13:16:32 +01:00
Matej Zrimšek e36ec69ca9 Project level permissions refactoring (mostly names). 2018-02-14 13:16:32 +01:00
Matej Zrimšek 93536afcd5 Renamed permission 'update_project' to 'manage_project'. Some permissions fixes; added them in some places where they were missing. 2018-02-14 13:16:32 +01:00
Matej Zrimšek 13e9a2a132 Corrected some project level permissions; minor refactoring. 2018-02-14 13:16:32 +01:00
Matej Zrimšek e5799ee6dc Some permission fixes. 2018-02-14 13:16:32 +01:00
Matej Zrimšek a21343a819 Fixing and refactoring project permissions in controllers. 2018-02-14 13:16:32 +01:00
Matej Zrimšek 279da20060 Fixed Hound warnings. 2018-02-14 13:16:32 +01:00
Matej Zrimšek d423700e84 Used permissions where they were missing. 2018-02-14 13:16:32 +01:00
Matej Zrimšek 321ddc2916 Grouped existing project permissions and used 'canaid' gem. 2018-02-14 13:09:45 +01:00
mlorb 8d0ac93c80 add check to start work on next task notification if recent changes notification is switched off 2018-02-13 11:01:45 +01:00
Zmago Devetak 027297d46a
Merge pull request #985 from ZmagoD/zd_SCI_2008 
fixes bug with assets upload on task result page,
 2018-02-12 11:40:44 +01:00
okriuchykhin e7fb1bc716
Merge pull request #967 from okriuchykhin/ok_SCI_1966 
Merge gilson-iot-rails4 to master [SCI-1966]
 2018-02-12 11:02:17 +01:00
okriuchykhin 5a94b40d9c
Merge pull request #978 from okriuchykhin/ok_SCI_2003 
Improve files handling in protocol cloning [SCI-2003]
 2018-02-12 11:01:59 +01:00
zmagod 27b7aff3ea fixed bug with assigned repository items [fixes SCI-2040] 2018-02-12 10:49:35 +01:00
zmagod ace78cfb58 fixes errors with form id duplicates [fixes SCI-2039] 2018-02-09 14:54:16 +01:00
Zanz2 128f15f984
Merge pull request #990 from Zanz2/code_formatting_sci1822 
Commands in protocols io steps are now properly formatted like code [SCI-1822]
 2018-02-08 08:52:44 +01:00
Zanz2 49a4d9cf23 Tables now no longer have huge whitespace below them, it is now fixed 300 pixels and when its too big the table gets a scrollbar 2018-02-07 15:50:42 +01:00
Zanz2 60aa1a0953 Authors are now displayed as actual authors, not the person that added the protocol, and the created at date from protocols io is in protocol info, like it was before 2018-02-07 15:12:03 +01:00
Zanz2 a6356d2420 Fixed newline styling, now code is styled in newlines, and since \n doesnt work i change it to <br> with gsub and that allows code to be written into multiple lines 2018-02-07 14:46:25 +01:00
Zmago Devetak e400514020
Merge pull request #981 from ZmagoD/zd_SCI_2026 
fixes bug with step table update [fixes SCI-2026]
 2018-02-07 14:35:15 +01:00
Zmago Devetak b33d09536e
Merge pull request #987 from ZmagoD/zd_SCI_2033 
fixes user dropdown [fixes SCI-2033]
 2018-02-07 14:34:37 +01:00
Zanz2 efaf5ad721 Commands now get styled like code 2018-02-07 13:51:22 +01:00
Zanz2 ef0733b886
Merge pull request #988 from Zanz2/red_error_msg_sci1993 
Accidentally deleted this off master, identical to the branch before [SCI-1993]
 2018-02-07 13:08:45 +01:00
Zanz2 a6e93b8e35 Fixed hound line too long 2018-02-07 13:04:02 +01:00
mlorb edbcdc6bf4
Merge pull request #986 from mlorb/ml-sci-2031 
Fix error on task activity [SCI-2031]
 2018-02-07 11:39:14 +01:00
Zanz2 367eff6401 re-pushing this, this got merged into master already but i accidentally deleted it when merging two branches 2018-02-07 11:17:53 +01:00
Zanz2 e56c0bb100 Tables are now always atleast 5x5, like in scinote when creating new table 2018-02-07 10:55:44 +01:00
Zanz2 f7f46a094e Fixed PR and a mistake i made 2018-02-07 09:53:49 +01:00
Zanz2 167cbc98e5
Merge branch 'master' into yellow_flashv3_SCI1834 2018-02-07 09:42:56 +01:00
Zanz2 80735f2412 Fixed the bug with big text difference in preview and imported protocol 2018-02-07 09:26:45 +01:00
zmagod 695e9d90d2 fixes user dropdown [fixes SCI-2033] 2018-02-07 08:43:42 +01:00
Luka Murn 4389c110cf
Merge pull request #982 from biosistemika/lm-remove-component-loader 
Remove component loader (so builds pass)
 2018-02-06 17:02:08 +01:00
mlorb e151c963e1 fix error on task activity 2018-02-06 16:34:16 +01:00
zmagod 2ad4eb3488 fix bug with checklists 2018-02-06 16:15:10 +01:00
zmagod 75cc9d11df fix error on checklists 2018-02-06 16:06:15 +01:00
Zanz2 a37d4f3cde there are always now atleast 5 rows, like in edit table in repository, so it adds empty rows if there are not atleast 5 originally 2018-02-06 15:46:03 +01:00
Zmago Devetak 25a42658c8
Merge pull request #980 from ZmagoD/zd_SCI_2009 
adds nil check in step_table_element for table name [fixes SCI-2009]
 2018-02-06 15:44:56 +01:00
zmagod bd1345d560 fixes bug with assets upload on task result page, 
adds ctrl+v listener to upload images from clipboard, adds image preview modal
 2018-02-06 15:39:19 +01:00
Zanz2 a2df9777f6
Merge pull request #983 from Zanz2/gen_rep_empty_sci-2000 
fixed empty table name unable to generate reports bug [SCI-2000]
 2018-02-06 14:34:31 +01:00
Zanz2 83e9550feb
Merge pull request #966 from Zanz2/images_not_imported_SCI1807 
Images not imported [SCI-1807]
 2018-02-06 14:33:35 +01:00
Zanz2 f9c6eafe49 most protocol attributes, and step description and step expected result now dont get cut tables when they are at max character limit 2018-02-06 12:04:24 +01:00
Zanz2 9b5ddc6789 moved code from older branch to new master 2018-02-06 11:03:17 +01:00
Zanz2 748af2cbf7 Fixed the issue, table name defaults to empty string space now 2018-02-06 10:29:49 +01:00
Zanz2 dac59cf4d0 Refactored to PR, deleted unrelated things 2018-02-06 09:06:33 +01:00
Luka Murn 4ddc7dfa85 Comment react-hijack code 2018-02-06 08:00:29 +01:00
zmagod b48fa3f231 fixes bug with step table update [fixes SCI-2026] 2018-02-05 17:32:38 +01:00
zmagod ad742ac2d1 adds nil check in ste_table_element for table name [fixes SCI-2009] 2018-02-05 16:27:04 +01:00
zmagod 25dcfe66ae Merge branch 'master' of https://github.com/biosistemika/scinote-web into zd_SCI_1960 2018-02-01 16:04:05 +01:00
Oleksii Kriuchykhin 16e1d072b9 Improve files handling in protocol clonning [SCI-2003] 2018-02-01 15:44:08 +01:00
okriuchykhin def08a3faa
Merge pull request #971 from okriuchykhin/ok_SCI_1968 
Update notification settings accessor names and update Rubocop config [SCI-1968]
 2018-01-31 15:40:09 +01:00
zmagod 366b67ca1c fixes per @mojca 's request 2018-01-31 15:18:18 +01:00
mlorb 39fc52ddf4
Merge pull request #972 from mlorb/ml-sci-1997 
Fix type error at changing task at navigation bar after setting due date [SCI-1997]
 2018-01-31 15:13:28 +01:00
Zmago Devetak ccab688728
Merge pull request #975 from ZmagoD/zd_SCI_2001 
Zd sci 2001
 2018-01-31 14:42:41 +01:00
zmagod b1684dbd5b removed unneeded hook 2018-01-31 14:40:19 +01:00
zmagod 34f5076b04 fixes failin specs [fixes SCI-2001] 2018-01-31 12:05:45 +01:00
mlorb 553039b7b4 fix type error at changing task at navigation bar after seting due date 2018-01-30 13:29:54 +01:00
Oleksii Kriuchykhin 7a769bbfde Update notification settings accessor names and update Rubocop config [SCI-1968] 2018-01-29 16:15:12 +01:00
mlorb 775b8b3201 fix bug with ajax error caused to the other user when deleting column in custom repository 2018-01-29 16:01:33 +01:00
zmagod 029d69b033 revert to old setting [fixes SCI-1967] 2018-01-29 15:42:22 +01:00
Zanz2 0607579d06 Fixes the database error i was having on home machine too, wasnt exclusive to me 2018-01-27 14:57:07 +01:00
Zanz2 70a972c264 Fixed pr and small oversight 2018-01-27 14:33:01 +01:00
Zanz2 2a287193b7 Merge branch 'images_not_imported_SCI1807' of https://github.com/Zanz2/scinote-web into images_fix 2018-01-27 13:50:35 +01:00
Zanz2 e8f6dc0d24
Merge pull request #962 from Zanz2/missing_error_SCI1993 
A red error messagge is now displayed when not selecting protocol [SCI-1993]
 2018-01-26 16:00:15 +01:00
Zanz2 1d4ce42f23 fixed according to PR 2018-01-26 15:29:13 +01:00
Zanz2 98b3ddbdb0
Merge branch 'master' into images_not_imported_SCI1807 2018-01-26 15:13:40 +01:00
Zanz2 a15e624b06
Merge pull request #965 from Zanz2/sub_prot_2short_SCI1995 
Changed sub protocol name length limit to limit of protocol titles on scinote [SCI-1995]
 2018-01-26 15:08:03 +01:00
Oleksii Kriuchykhin 7c14800570 Change base class for API controller [SCI-1966] 2018-01-26 13:34:38 +01:00
Zanz2 e041426a09
Merge pull request #964 from Zanz2/steps_order_SCI1816 
Steps order fix [SCI-1816]
 2018-01-26 11:32:28 +01:00
Zanz2 48b48c945c Refactored hound errors, now that rubocop works 2018-01-26 11:17:49 +01:00