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Author SHA1 Message Date
zmagod 4afaa50ce0 fixed multiple tables check 2016-09-01 13:49:12 +02:00
zmagod 111cb81d08 clear tables from report [fixes SCI-247] again 2016-09-01 13:38:09 +02:00
Luka Murn 61f4fbd1d4 Remove warning info when removing pending user from organization 2016-09-01 13:23:53 +02:00
zmagod ac7ac95da8 [fixes SCI-332] 2016-09-01 10:38:20 +02:00
Matej Zrimšek 4fdf478426 Minor refactoring. 2016-08-31 17:57:06 +02:00
Matej Zrimšek 828eebeb16 Popup for preventing page leaving when uploading avatar fixed [fixes SCI-399] 2016-08-31 17:21:17 +02:00
zmagod 55ba2de41f fixes object duplication 2016-08-31 16:34:08 +02:00
zmagod fabfa83171 introdutory popup cookie 2016-08-31 15:18:21 +02:00
zmagod e8f971829a added project to session storage 2016-08-31 15:13:17 +02:00
Luka Murn 5cb79f6282 Fix the default parameters in JS 
This was causing major issues in IE.
 2016-08-31 14:04:45 +02:00
zmagod eb394ce209 fixes searching tables bug [fixes SCI-402] 2016-08-31 11:01:10 +02:00
zmagod b05c3df4d3 adds toggle id only to elements with modules 2016-08-31 10:25:40 +02:00
zmagod eb39eedfdf [fixes SCI-398] again 2016-08-31 08:46:51 +02:00
zmagod 21f84bacb6 set sidebar collapsed elements 2016-08-31 08:24:59 +02:00
jbargu 2cd5d85d68 Merge pull request #120 from jbargu/jg_SCI_328_move_experiment_reconnect 
When moving a task, it should connect the source and destination
 2016-08-30 18:01:38 +02:00
mlorb 905acfd43d Merge pull request #109 from mlorb/ml_sci_286 
fixes notification when adding new sample [SCI-286]
 2016-08-30 17:54:45 +02:00
Mojca Lorber dd8e5d5e12 fixes hound 2016-08-30 17:12:26 +02:00
Mojca Lorber 1b1e6daa21 fixes notification disappearance and error notifications 2016-08-30 16:55:59 +02:00
Jure Grabnar 9a82e7d72b Connect tasks on moving 
SCI-328 #close
 2016-08-30 15:57:27 +02:00
mlorb 8fc29248b3 Merge pull request #119 from mlorb/ml_sci_396 
fixes missing experiment name in side bar [SCI-396]
 2016-08-30 15:05:04 +02:00
Zmago Devetak 11b314fa20 Merge pull request #107 from ZmagoD/zd_bug_fix 
fixes new task button after tutorial ends
 2016-08-30 15:04:11 +02:00
Zmago Devetak 375a72db18 Merge pull request #114 from ZmagoD/zd_SCI_294_vol2 
fixes reports file name [fixes SCI-294]
 2016-08-30 14:59:07 +02:00
Zmago Devetak 5b4eb07960 Merge pull request #118 from ZmagoD/zd_SCI_398 
fixes workflow img bug [fixes SCI-398]
 2016-08-30 14:55:33 +02:00
Mojca Lorber 52f228725a fixes hound 2016-08-30 14:04:47 +02:00
Mojca Lorber aeda6f77d2 fixes missing experiment name in side bar 2016-08-30 13:51:16 +02:00
zmagod a947354fb5 fixes update times [fixes SCI-398] 2016-08-30 13:23:48 +02:00
Luka Murn c6e575bd2a Merge pull request #115 from Ducz0r/lm-deleting-comments-fix 
Fix for deleting comments
 2016-08-30 13:15:35 +02:00
Luka Murn 2b382fee0f Merge pull request #113 from Ducz0r/lm-add-first-time-activities 
Fix first time data generator & fake data generator
 2016-08-30 13:07:52 +02:00
Luka Murn 0e0228cb8c Codestyle fixes 2016-08-30 13:06:49 +02:00
zmagod 95ab35e3d6 cleanup update timestamp 2016-08-30 12:58:52 +02:00
Mojca Lorber 43c3a0bb81 fixes merge again 2016-08-30 12:54:08 +02:00
Mojca Lorber 81f9e59dcd fixes merge 2016-08-30 12:14:15 +02:00
Mojca Lorber e8d187b5f6 Merge branch 'ml_sci_395' 
Conflicts:
	app/views/canvas/edit/modal/_move_module.html.erb
	app/views/canvas/edit/modal/_move_module_group.html.erb
 2016-08-30 11:41:25 +02:00
Luka Murn 77ec5bcff9 Reposition comment dropdowns horizontally if needed 
Closes SCI-258
 2016-08-30 11:39:50 +02:00
zmagod f356acb882 fixes reports file name [fixes SCI-294] 2016-08-30 11:36:39 +02:00
Zmago Devetak 6878adda46 Merge pull request #112 from ZmagoD/zd_SCI_338_vol2 
Tutorial
 2016-08-30 11:07:51 +02:00
Luka Murn 4ee4c6caba Remove JS validator from step comments 2016-08-30 11:06:30 +02:00
jbargu fa357dd54f Merge pull request #110 from jbargu/jg_SCI_328_move_task_no_experiment 
Remove move on empty experiments
 2016-08-30 11:06:16 +02:00
zmagod 4b6567e488 fixed workflowimg link 2016-08-30 11:03:33 +02:00
zmagod 6f1c4df942 fixed new task button in canvas 2016-08-30 10:48:28 +02:00
Zmago Devetak e96429409e Merge pull request #108 from ZmagoD/zd_SCI_247_vol2 
Fixes step destroing bug and fixes reports [fixes SCI-247]
 2016-08-30 09:57:56 +02:00
zmagod 57c1707e81 fixes secondary navigation [fixes SCI-338] 2016-08-30 09:53:56 +02:00
Luka Murn c86d21d689 Fix bug in organization.rb 
Bug was related to introduction of experiment level.
 2016-08-30 09:46:54 +02:00
Mojca Lorber a35bf7182f fixes troubles 2016-08-30 09:43:39 +02:00
Mojca Lorber 596d403d5f change position of buttons 2016-08-30 09:16:53 +02:00
zmagod d33bb50519 disabled secondary navigation in samples tutorial 2016-08-30 08:57:05 +02:00
zmagod 5518d1cd1e fixed 16 step of tutorial 2016-08-30 08:52:44 +02:00
Jure Grabnar 0c184dcdcf Remove Move button on empty experiments 
SCI-328 #close.
 2016-08-30 08:26:59 +02:00
Luka Murn 30e8e33774 Add comment activities to first time data generator 2016-08-30 08:19:35 +02:00
Mojca Lorber b07f1af90f fixes hound again again 2016-08-29 17:08:00 +02:00
Mojca Lorber 7f8bb9be53 fixes hound again 2016-08-29 13:59:51 +02:00
Mojca Lorber 60b0d69a72 fixes hound 2016-08-29 13:56:05 +02:00
Mojca Lorber 53cdbc2638 fixes notification when adding new sample 2016-08-29 13:45:54 +02:00
zmagod 17aacc8ff5 fixes step destroing bug and fixes reports [fixes SCI-247] 2016-08-29 12:04:46 +02:00
zmagod 5af9d10c6a fixes new task button after tutorial ends 2016-08-29 11:46:45 +02:00
zmagod 2ac20d1af1 adds new image + new panel title [fixes SCI-336] 2016-08-29 09:28:29 +02:00
Luka Murn a0311970f8 Add missing commits for showing image and not able to preview 2016-08-26 16:49:32 +02:00
zmagod d886d05ccb Merge branch 'zd_SCI_338' 2016-08-26 16:32:49 +02:00
Matej Zrimšek e3a7f45fdf Merge branch 'master' into mz_file_upload_and_client_side_upgrade 
Conflicts:
	app/assets/javascripts/application.js
	app/views/results/_result_asset.html.erb
	app/views/steps/_step.html.erb
 2016-08-26 11:13:40 +02:00
Zmago Devetak 0cfc758f43 Merge pull request #102 from ZmagoD/zd_SCI_336 
implement first time popup logic
 2016-08-26 09:19:36 +02:00
zmagod b0bd92e3f4 fixed edit action 2016-08-26 09:17:55 +02:00
zmagod 2031c42920 fixed confirmation text 2016-08-26 09:13:45 +02:00
Matej Zrimšek 782d384e26 Spinner now doesn't hide prematurally on file uploading. Some recently introduced bugs quickfixes (report images not showing, locale missplealing, client-side blank tables deletion deleted all tables, error if no asset present in a step). 2016-08-25 22:26:53 +02:00
Matej Zrimšek 04d9163ff6 Paperclip file spoofing corrected/modified. 2016-08-25 18:57:06 +02:00
zmagod 99976722a8 uncomment js file 2016-08-25 18:49:49 +02:00
zmagod 1738ca66d2 one-time introductory popup [fixes SCI-336] 2016-08-25 18:44:21 +02:00
Luka Murn 8018cff02e Merge pull request #103 from Ducz0r/bb_edit_delete_comments 
Edit&delete comments
 2016-08-25 17:18:48 +02:00
mlorb b1218cb3d6 Merge pull request #59 from biosistemika/ml_sci_244 
fixes tutorial bug of inappropriate window [SCI-244]
 2016-08-25 17:16:45 +02:00
Luka Murn b533b0aca6 Fix another minor bug 2016-08-25 17:15:53 +02:00
Luka Murn 7cd94e8b0d Fix a minor bug on canvas 2016-08-25 17:09:55 +02:00
Luka Murn 9cd99fc532 Display "no comments" if you delete the last comment 2016-08-25 17:01:30 +02:00
Zmago Devetak 1b21e55fea Merge pull request #100 from ZmagoD/zd_SCI_381 
Adds experiment and team to tag search resuls [fixes SCI-381]
 2016-08-25 15:43:50 +02:00
zmagod 7a47ff6bc5 fixed new task error 2016-08-25 15:30:32 +02:00
zmagod 8ff645fb89 disabled experiment dropdown actions 2016-08-25 15:16:51 +02:00
Zmago Devetak b090fd8d5b Merge pull request #95 from ZmagoD/zd_SCI_374 
adds edit workflow link if no workflow [fixes SCI-374]
 2016-08-25 14:07:33 +02:00
Luka Murn a480c8d403 Styling fixes 2016-08-25 13:59:50 +02:00
Luka Murn 6d86a02d7c Add individual permission checks in dropdowns 
Closes SCI-258.
 2016-08-25 13:51:50 +02:00
Luka Murn 8592c13ed4 Remove now obsolote controller actions 2016-08-25 13:51:31 +02:00
Luka Murn b0d7b9dc75 Generate activities when editing/deleting comments 2016-08-25 13:51:31 +02:00
Luka Murn 24dd25d9f5 Add edit/delete result comment functionality 
Lessons learned during this fix:
Don't use dependant: :destroy on both ends of association
between 2 ActiveRecords, or you will run into stack overflow.
 2016-08-25 13:51:31 +02:00
Luka Murn bac0455435 Add edit&delete functionality to step comments 
This commit also:
* fixes a bug in permission_helper.rb,
* fixes comments.js a bit,
* adds 2 more re-renders of dropdown position calculations to canvas.js and projects/index.js.
 2016-08-25 13:51:31 +02:00
Luka Murn 512efd3812 Fix 2 lines that were too long 2016-08-25 13:51:31 +02:00
Luka Murn c92d016f65 Add edit&delete module/task comments functionality 
This required a minor fix of comments.js.
 2016-08-25 13:51:31 +02:00
Luka Murn f0d9cb96fa Add edit project comments functionality 2016-08-25 13:51:30 +02:00
Luka Murn 15c0baeee8 Add delete project comment functionality 
This commit also removes the old code from @bberic.
 2016-08-25 13:51:30 +02:00
Luka Murn 9e3bb8edb7 Add dependant: :destroy to comments 2016-08-25 13:51:30 +02:00
Luka Murn 8a73a3ab5c Update permission_helper.rb and routes.rb 2016-08-25 13:51:30 +02:00
Luka Murn 319bcc7850 Add permissions for comments to permission_helper.rb 2016-08-25 13:51:30 +02:00
Luka Murn 5569a1e6d2 Revert 2 files that contained no changes 2016-08-25 13:51:30 +02:00
scibb a76d82d188 delete and edit comments for projects, protocols, results, and workflow elements 2016-08-25 13:51:30 +02:00
zmagod 5fabe06b8d implement first time popup logic 2016-08-25 11:44:49 +02:00
Mojca Lorber 4a5d720724 change position of overview and samples 2016-08-25 11:19:53 +02:00
zmagod 1120ef1407 adds experiment and team to tag search resuls [fixes SCI-381] 2016-08-25 10:40:03 +02:00
mlorb c38a4e2614 Merge pull request #94 from mlorb/ml_sci_375 
add move experiment instructions [SCI-375]
 2016-08-25 09:45:16 +02:00
Luka Murn c082bceafc Merge pull request #98 from Ducz0r/lm-sci-385 
Fix bug with linked tasks
 2016-08-25 09:29:50 +02:00
zmagod f515366d91 fixes workflowing after updating description, fixes canvas bug 2016-08-25 09:11:42 +02:00
mlorb 0a066f436f Merge pull request #96 from mlorb/ml_sci_369 
buttons update on experiment overview [SCI-369]
 2016-08-25 08:54:16 +02:00
zmagod 92bb3dda99 hide last next button 2016-08-25 08:46:11 +02:00
zmagod dbdbff12eb add experiment level tutorial step [fixes SCI-338] 2016-08-24 19:03:58 +02:00
Luka Murn 3dddffaa34 Fix bug with linked tasks 
This bug was a legacy of experiment level introduction.
Closes SCI-385, SCI-366.
 2016-08-24 17:22:16 +02:00
mlorb 2d90ad1a65 Merge pull request #88 from mlorb/ml_sci_362 
fixes tile size in edit canvas [SCI-362]
 2016-08-24 17:07:11 +02:00
Mojca Lorber 2a897432e1 update buttons on canvas view 2016-08-24 17:00:27 +02:00
jbargu 5c104ac050 Merge pull request #93 from jbargu/jg_sci_378_move_experiment_error 
Fix 404 move experiment error
 2016-08-24 16:35:29 +02:00
Mojca Lorber d04df349d5 fixes medium and small zoom 2016-08-24 14:18:12 +02:00
Zmago Devetak 0de7ea31ea Merge pull request #90 from ZmagoD/zd_SCI_376 
fixes cloned experiment protocol [fixes SCI-376]
 2016-08-24 14:12:19 +02:00
zmagod 9393a96302 adds edit workflow link if no workflow [fixes SCI-374] 2016-08-24 14:10:50 +02:00
Mojca Lorber 0558d49e26 buttons update on experiment overview 2016-08-24 13:50:25 +02:00
Jure Grabnar 00da7efb44 Merge remote-tracking branch 'origin/jg_SCI_328_moving_workflows' 
Conflicts:
	app/models/experiment.rb

SCI-328 #close
 2016-08-24 13:11:10 +02:00
Zmago Devetak afaeab492d Merge pull request #87 from ZmagoD/zd_SCI_371 
hide the dropdown if user has no permissions(technician) [fixes SCI-371]
 2016-08-24 11:56:29 +02:00
jbargu 180efac87b Merge pull request #92 from jbargu/jg_exp_overview_navbar_sci_353 
Show whole tree structure for experiment in sidebar
 2016-08-24 11:50:39 +02:00
Jure Grabnar dff5abf3d9 Fix module moving position not being updated 2016-08-24 11:42:21 +02:00
Mojca Lorber f554dc6018 add move experiment instructions 2016-08-24 11:36:50 +02:00
Jure Grabnar 3e5e9aed22 Fix 404 on move experiment 
[fixes SCI-378]
 2016-08-24 11:09:03 +02:00
zmagod 27d77bc73f added new permission for dropdown actions 2016-08-24 10:56:30 +02:00
Jure Grabnar e60533af57 Add whole tree structure for experiment 
SCI-353 #close
 2016-08-24 10:47:30 +02:00
Jure Grabnar a091571d9c Add consistent links for archive for all entities 2016-08-24 09:14:29 +02:00
Jure Grabnar 0cdb18ffcd Update experiment links on sidebar between actions 2016-08-24 09:05:57 +02:00
Jure Grabnar a41d851830 Fix secondary navigation for experiment level (overview) 2016-08-24 08:54:02 +02:00
mlorb 5c8d669cac Merge pull request #81 from mlorb/ml_sci_364 
fixes edit experiment [SCI-364]
 2016-08-23 16:49:20 +02:00
Zmago Devetak 396325bd67 Merge pull request #86 from ZmagoD/zd_SCI_365 
changed experiment create redirection [fixes SCI-365]
 2016-08-23 16:30:48 +02:00
Zmago Devetak 9dc7708b73 Merge pull request #85 from ZmagoD/zd_SCI_360 
fixes project overview style and add no description link [fixes SCI-360]
 2016-08-23 16:24:22 +02:00
Zmago Devetak d67997fa8b Merge pull request #83 from ZmagoD/zd_SCI_347 
Fixes search result link for experiment [fixes SCI-347]
 2016-08-23 16:23:41 +02:00
Zmago Devetak aa650bbc65 Merge pull request #82 from ZmagoD/zd_SCI_359 
Add plus button at the bottom of project overview page [fixes SCI-359]
 2016-08-23 16:23:20 +02:00
Zmago Devetak 7e2db66f42 Merge pull request #79 from ZmagoD/zd_SCI_345 
Adds font-awesome to pdf [fixes SCI-345]
 2016-08-23 16:22:30 +02:00
Zmago Devetak 65049692ea Merge pull request #78 from ZmagoD/zd_SCI_349 
updating thumbnail
 2016-08-23 16:22:07 +02:00
zmagod 0429816154 deleted commented code 2016-08-23 16:21:11 +02:00
zmagod 2bbb439745 fixes cloned experiment protocol [fixes SCI-376] 2016-08-23 16:15:45 +02:00
Mojca Lorber 126cf0c210 fixes drag connections area 2016-08-23 16:08:05 +02:00
Mojca Lorber 322be64b5f change experiment path 2016-08-23 14:44:22 +02:00
Mojca Lorber 86ed4c18d8 fixes hound 2016-08-23 13:51:20 +02:00
Mojca Lorber ac68db97b9 fixes tile size in edit canvas 2016-08-23 13:33:10 +02:00
Jure Grabnar 67768c8865 Fix Hound errors 2016-08-23 11:08:10 +02:00
Jure Grabnar 0d56cea3e4 Add placeholders for empty experiments 2016-08-23 10:37:48 +02:00
Jure Grabnar 027193f937 Add links for moving module groups 2016-08-23 10:09:25 +02:00
Jure Grabnar 358f2b1c47 Add moving for newly created modules 2016-08-23 10:00:34 +02:00
zmagod f918746946 hide the dropdown if user has no permissions(technician) [fixes SCI-371] 2016-08-23 09:26:52 +02:00
zmagod 66b8a3055d changed experiment create redirection [fixes SCI-365] 2016-08-23 09:03:39 +02:00
Jure Grabnar c0edf51054 Fix bounding box algorithm, can move new modules 2016-08-23 09:00:25 +02:00
zmagod 03a3759cf5 fixes project overview style and add no description link [fixes SCI-360] 2016-08-23 08:52:53 +02:00
Jure Grabnar 8940ba891b Add initial position for moving workflows 2016-08-22 17:52:55 +02:00
Jure Grabnar 667b7671a6 Add connections for moved workflows 2016-08-22 17:26:21 +02:00
zmagod 9a05935067 fixed search result link for experiment [fixes SCI-347] 2016-08-22 15:35:47 +02:00
Mojca Lorber 75c52d20e5 fixes hound 2016-08-22 15:30:27 +02:00
zmagod 8c592753e4 fixes hound 2016-08-22 15:27:11 +02:00
zmagod bb11999566 adds plus button at the bottom of project overview page [fixes SCI-359] 2016-08-22 15:22:05 +02:00
Mojca Lorber 131d0d269a fixes edit experiment 2016-08-22 15:18:02 +02:00
zmagod eab05eb9db adds font-awesome to pdf [fixes SCI-345] 2016-08-22 14:40:09 +02:00
zmagod d38f29d207 set ajax loading of experiments images [fixes SCI-349] 2016-08-22 11:29:19 +02:00
mlorb ed1cd193ac Merge pull request #77 from mlorb/ml_sci_357 
fixes warning messages when loading a new protocol that is linked with repository [SCI-357]
 2016-08-22 08:56:36 +02:00
mlorb 0832466d20 Merge pull request #76 from mlorb/ml_sci_286 
fixes notifications when creating new sample type or group [SCI-286]
 2016-08-22 08:54:28 +02:00
Mojca Lorber 1c220aba7b delete comment 2016-08-22 08:50:48 +02:00
Jure Grabnar 5bb99adb25 Add frontend logic for moving workflows from canvas 2016-08-19 17:11:17 +02:00
zmagod b86e67a0d6 refactor initProjectExperiment 2016-08-19 16:38:34 +02:00
Mojca Lorber fb081be682 fixes warning messages when loading a new protocol that is linked with repository 2016-08-19 16:03:10 +02:00
zmagod cac5033eba set ajax for workflow img 2016-08-19 15:36:12 +02:00
Zmago Devetak 99aa66cd84 Merge pull request #74 from ZmagoD/zd_SCI_346 
check search input string [fixes SCI-346]
 2016-08-19 14:01:56 +02:00
Mojca Lorber 799cac1238 fixes hound 2016-08-19 13:55:34 +02:00
Jure Grabnar 80498260e5 Add backend for moving task from canvas 2016-08-19 13:53:43 +02:00
Jure Grabnar f575303d11 Update get_new_position for new canvas size 
SCI-358 #close
 2016-08-19 13:42:28 +02:00
Mojca Lorber 51e0d53b12 remove code duplication 2016-08-19 13:08:35 +02:00
Mojca Lorber 571f5b60f3 fixes notifications appearance and disappearance and content adjustment 2016-08-19 10:48:43 +02:00
Mojca Lorber 5c77167388 update buttons 2016-08-18 16:47:16 +02:00
Mojca Lorber 5695842fe3 fixes notifications when creating sample types and groups 2016-08-18 16:05:15 +02:00
Zmago Devetak 58930f3456 Merge pull request #73 from ZmagoD/zd_SCI_344 
fixes user duplication [fixes SCI-344]
 2016-08-18 13:28:59 +02:00
zmagod 2216a86db5 hound again 2016-08-18 13:27:46 +02:00
zmagod d3f61bdd18 fixes hound alert 2016-08-18 13:24:44 +02:00
Zmago Devetak a680b09cc9 Merge pull request #72 from ZmagoD/zd_fix_exl_archive 
fixed experiments archive bug
 2016-08-18 13:16:51 +02:00
Zmago Devetak fe626a8cb3 Merge pull request #71 from ZmagoD/zd_SCI_294 
Zd sci 294
 2016-08-18 13:16:38 +02:00
zmagod d62500cb56 check search input string [fixes SCI-346] 2016-08-18 13:14:31 +02:00
zmagod 4b5be7530c fixed task archive 2016-08-18 11:53:57 +02:00
zmagod da2b9ccf82 fixes user duplication [fixes SCI-344] 2016-08-18 11:26:52 +02:00
zmagod fa08b861d0 fixed experiments archive bug 2016-08-18 10:55:29 +02:00
Jure Grabnar 6879521a75 Add missing .experiment to can_unlink_protocol 2016-08-18 10:48:44 +02:00
zmagod 6bb8d075e0 truncate asset name in task step and result [fixes SCI-294] 2016-08-18 09:22:12 +02:00
zmagod 072f816286 refactor restore_after_tutorial function 2016-08-18 08:55:40 +02:00
zmagod f2ee5d73a0 fixed project tutorial bug 2016-08-18 08:53:34 +02:00
Zmago Devetak b6ccecf478 Merge pull request #69 from ZmagoD/zd_SCI_335 
cleans experiment form report if moved [fixes SCI-335]
 2016-08-18 08:37:09 +02:00
Jure Grabnar c3074e91de Fix activity in first time generator 2016-08-18 08:33:08 +02:00
mlorb 36d24523b4 Merge pull request #61 from biosistemika/ml_sci_291 
fixes dissapearance of sample type/group when editing samlpe or adding new sample [SCI-291]
 2016-08-18 08:25:31 +02:00
Zmago Devetak 4897e2da0c Merge pull request #68 from ZmagoD/zd_SCI_330 
Zd sci 330
 2016-08-18 08:10:20 +02:00
Zmago Devetak f2e08db106 Merge pull request #67 from ZmagoD/zd_SCI_337 
Zd sci 337
 2016-08-18 08:06:38 +02:00
Zmago Devetak d17af4e898 Merge pull request #66 from ZmagoD/zd_SCI_331 
adds active class to experiment name in sidebar [fixes SCI-331]
 2016-08-18 08:06:03 +02:00
Matej Zrimšek 4ad384df5a Fixed hound alerts. 2016-08-17 21:02:05 +02:00
Matej Zrimšek 27a9dac412 File permissions corrected, with some refactoring. 2016-08-17 18:23:24 +02:00
Matej Zrimšek e4a6a3944e Added deleting of files on S3 server when editing/removing a file. Some refactoring. 2016-08-17 18:13:35 +02:00
Matej Zrimšek ccdccc5cf1 Changed file uploding to work properly with multiple files and be user friendly in case of errors. Some function names refactoring. 2016-08-17 18:11:13 +02:00
Matej Zrimšek 854ef0d227 Special characters caused error [fixes SCI-315]. 2016-08-17 18:10:47 +02:00
Matej Zrimšek c87ba5b45c Multiple files upload handling and user experience improved. Spinner now also prevents user from accidentally leaving page. 2016-08-17 18:10:32 +02:00
Matej Zrimšek 951cf67b3d A lot of file uploading edge cases considered. File uploading is now actually redirected to S3 server, as before was not. Error functions changed and error output format specified, which should be used consistently throughout the application. Some other refactoring. 2016-08-17 18:08:21 +02:00
Matej Zrimšek b70f49f4e0 Some additional refinements. 2016-08-17 18:00:04 +02:00
Matej Zrimšek 86880f0299 Additional changes, refactoring and improvements. 2016-08-17 17:57:54 +02:00
Matej Zrimšek 01aad1764c Some hotfixes to previous commit. Client-side file validation added (except file type validation). Some refactoring. 2016-08-17 17:54:45 +02:00
Matej Zrimšek e2f94caa96 Step creation is now completelly validated on client-side also, to avoid front-end problems after server-side validation. This was needed as lots of issues were caused by this. Also step creation user experience is enriched and refactoring of related code was done. 2016-08-17 17:54:06 +02:00
Jure Grabnar 78cf4f396e render_403 and 404 now return true 
To prevent any: render_403 and return type of bugs
 2016-08-17 15:46:30 +02:00
Jure Grabnar 77f75fdeb6 Delete module from canvas when moving 2016-08-17 15:46:30 +02:00
Jure Grabnar 0cdea0b51a Add modal for moving task on canvas 2016-08-17 15:46:30 +02:00
zmagod c27c6c19e5 cleans experiment form report if moved [fixes SCI-335] 2016-08-17 15:21:53 +02:00
zmagod 9fd68c7bd5 fixes 'new experiment' button bug on smaller screens 2016-08-17 14:27:59 +02:00
zmagod ca0ba1403d set flask icon to experiment [fixes SCI-330] 2016-08-17 14:17:29 +02:00
zmagod cc2ed32ccb fixes canvas bug when no actions are available for the viewer 2016-08-17 13:29:22 +02:00
zmagod 6c5cc8aac9 fixes notification [fixes SCI-337] 2016-08-17 13:17:40 +02:00
zmagod 8d69ca0b88 adds active class to experiment name in sidebar [fixes SCI-331] 2016-08-17 11:21:48 +02:00
zmagod d557f3249f Adds single tasks to the experiment img [fixes SCI-329] 2016-08-17 11:13:49 +02:00
Zmago Devetak da735a51f4 Merge pull request #62 from ZmagoD/zd_SCI_318 
Zd sci 318
 2016-08-17 10:01:10 +02:00
Zmago Devetak 13697e8688 Merge pull request #58 from ZmagoD/zd_SCI_74 
Filter search query for special chars [fixes SCI_74]
 2016-08-17 10:00:47 +02:00
zmagod 4293f9c267 Merge branch 'zd_SCI_271' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_271 2016-08-17 09:58:29 +02:00
zmagod 850f5d8dad fixing hound alerts 2016-08-17 09:44:23 +02:00
zmagod 7abc8f3a90 Merge branch 'master' into experiment-level 2016-08-17 09:28:35 +02:00
zmagod 76dd4bc90a fixed protocol status bar [fixes SCI-318] 2016-08-16 10:47:23 +02:00
Zmago Devetak 762b805651 Merge pull request #55 from ZmagoD/zd_papperclip_migration_bug 
fixes migration error
 2016-08-16 10:44:53 +02:00
Zmago Devetak 9b97dad03d Merge pull request #54 from ZmagoD/zd_SCI_39 
fixes loading samples error in blank project
 2016-08-16 10:44:35 +02:00
Jure Grabnar 275106c27c Add check for empty projects on move experiments 2016-08-16 10:20:36 +02:00
Mojca Lorber 7dc0c3672a fixes dissapearance of sample type/group when adding/editing new sample 2016-08-16 10:17:29 +02:00
Jure Grabnar c16eed5e63 Add missing dropdown_actions.js 2016-08-16 09:48:19 +02:00
zmagod 5e647f62d5 changed import label [fixes SCI-317] 2016-08-16 09:34:04 +02:00
Jure Grabnar a29b56b0bd Even more candy for our dog 2016-08-16 09:15:29 +02:00
Jure Grabnar b25a7758db Give a candy to our special dog 2016-08-16 09:10:45 +02:00
Jure Grabnar 042a33f2c7 Add activity for moving 2016-08-16 08:49:24 +02:00
Jure Grabnar e55c66b3d0 Add query for moveable projects 2016-08-16 08:47:04 +02:00
zmagod 852fe499fb clean up linked protocol 2016-08-12 16:31:40 +02:00
Jure Grabnar c387439fb2 Fix projects query for experiments 
Remove unneeded word in view
 2016-08-12 11:36:52 +02:00
Mojca Lorber e6f205368b fixes tutorial bug of inappropriate window 2016-08-12 11:33:27 +02:00
Jure Grabnar d7341d0383 Set actions/routes/view for move experiment 2016-08-12 11:26:18 +02:00
zmagod c9ff249067 fixed hound alert 2016-08-12 11:11:52 +02:00
zmagod 6c7cfb4467 filter search query for special chars [fixes SCI_74] 2016-08-12 11:08:51 +02:00
Jure Grabnar 555ed05ae6 Refactor/DRY dropdown actions code for experiment 2016-08-12 10:18:35 +02:00
mlorb 6b17385f3a Merge pull request #56 from biosistemika/ml_sci_302 
fixes problem with split table when generating pdf report [SCI-302]
 2016-08-12 08:55:10 +02:00
mlorb f3163ea7ce visual corrections 2016-08-12 08:54:14 +02:00
Jure Grabnar 9173c83502 Select current project in clone modal 2016-08-11 17:20:06 +02:00
Jure Grabnar 3c36293770 Add activity for cloning experiment 2016-08-11 17:00:33 +02:00
Jure Grabnar 5c40d04eb2 Add missing clone modal 2016-08-11 16:59:56 +02:00
Jure Grabnar 2f6ccac3bc Add unique experiment name and copy image when cloning 2016-08-11 16:58:31 +02:00
Jure Grabnar 6e8e9ecf21 Fix activities and the dreaded no project for modules error 2016-08-11 16:57:29 +02:00
zmagod d1f6a0f58d fixed hound 2016-08-11 16:24:44 +02:00
zmagod 701c26a2dd fixed canvas edit and samples tutorial [fixes: SCI-271] 2016-08-11 16:21:55 +02:00
zmagod a128815122 fixed tutorial tasks on canvas 2016-08-11 16:06:51 +02:00
Mojca Lorber 94915a9ba7 fixes problem with splitted table when generating pdf report [SCI-302] 2016-08-11 15:24:18 +02:00
Jure Grabnar 3b259d34b0 Basic cloning of experiment works 
Still missing:
- cloning of assets
- cloning of experiment image
 2016-08-11 15:13:36 +02:00
zmagod 2e1d81a985 fixed project archive in tutorial 2016-08-11 12:40:16 +02:00
Mojca Lorber b350dff826 fixes problem with splitted table when generating pdf report [SCI-302] 2016-08-11 10:42:36 +02:00
Jure Grabnar 7f21ae138a Set clone actions/routes/view 
DRY code for showing AJAX on project#show page
 2016-08-11 09:46:15 +02:00
scibb 32699578ed Merge pull request #52 from biosistemika/bb_canvas_fixes 
Bb canvas fixes
 2016-08-11 09:29:21 +02:00
zmagod 060da59bbb fixes migration error 2016-08-11 09:19:12 +02:00
Jure Grabnar 1ca34a7986 Fix result texts/tables 2016-08-10 15:44:33 +02:00
Jure Grabnar 52e6d7d300 Fix step comments 2016-08-10 15:44:33 +02:00
Jure Grabnar 3e72f29bfd Fix uploading of step assets 2016-08-10 15:44:33 +02:00
Jure Grabnar d69195a4f6 Fix uploading of result assets 2016-08-10 15:44:33 +02:00
zmagod c866e90b33 Merge branch 'zd_add_image_to_project_preview' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_add_image_to_project_preview 2016-08-10 11:33:37 +02:00
zmagod 7653f2b9ec fixed hound 2016-08-10 11:26:27 +02:00
Jure Grabnar b2855d69f6 Fix hound warning 2016-08-10 09:24:06 +02:00
zmagod deb739efa6 fixes loading samples error in blank project 2016-08-10 09:13:12 +02:00
Jure Grabnar 15d66c7884 Change validation for experiment workimg 2016-08-10 08:58:29 +02:00
Jure Grabnar 7b0f323576 Add expiring URL to experiment img 2016-08-09 16:37:44 +02:00
zmagod f77e0d4a6e changed workflow image name 2016-08-09 16:27:28 +02:00
zmagod 5583105d8a fixed hound alert 2016-08-09 14:28:55 +02:00
zmagod 5f3a5cb845 fixed project overview 2016-08-09 14:26:08 +02:00
Jure Grabnar e995165876 Double quotes -> single quotes (#hound) 2016-08-09 13:19:32 +02:00
Jure Grabnar 9f7df0af76 Fix checkbox in experiment reports 2016-08-09 13:13:50 +02:00
zmagod 176aad4c6d fixes multiple graphs rendering 2016-08-09 11:19:07 +02:00
Jure Grabnar 208e85e7e0 Remove archived experiments from reports 2016-08-09 11:17:25 +02:00
Jure Grabnar 1a7a7a1d1a Add info to experiment archive cards 
Also add addtional check for due date on archive experiment
 2016-08-09 11:04:46 +02:00
Jure Grabnar a0fe31479f Fix permissions for archived experiments 2016-08-09 10:00:44 +02:00
Jure Grabnar 0ca5725f9b Archive/restore of experiments now work 2016-08-08 16:35:45 +02:00
zmagod 1a56396eb5 add workflow image to project overview page [fixes SCI-41] 2016-08-08 16:02:17 +02:00
scibb 696075bf0f smaller grid steps set. In addition enddpoint bug was fixed 
SCI 170, SCI 292'
 2016-08-08 15:18:38 +02:00
Jure Grabnar 5c858ee577 Add missing experiment archive page 2016-08-08 15:04:38 +02:00
Jure Grabnar 2bd74866e0 Fix my_modules archive page 2016-08-08 15:04:02 +02:00
Jure Grabnar 5a023483d7 Prepare views for experiment archive 2016-08-08 14:19:35 +02:00
Jure Grabnar 775a39344c Fix experiment archive permissions 2016-08-08 13:40:08 +02:00
Jure Grabnar deecbf082c Remove badly merged code 2016-08-08 13:06:20 +02:00
Zmago Devetak 4bd489d29c Merge pull request #46 from ZmagoD/zd_SCI_303 
update sidebar v2 [fixes SCI-303]
 2016-08-08 08:56:01 +02:00
jbargu 3f91e7a476 Merge pull request #47 from biosistemika/jg_explvl_reports 
Update reports with experiment level

[Fixes SCI-35].
 2016-08-08 08:51:23 +02:00
zmagod 520cf2e0cf hound.... 2016-08-08 08:40:24 +02:00
zmagod e16abe486c fix hound alert 2016-08-08 08:37:22 +02:00
zmagod 756c3c777e styled workflow dots 2016-08-08 08:33:18 +02:00
zmagod 04d171997e Merge branch 'zd_SCI_41' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_41 2016-08-05 15:56:21 +02:00
zmagod 9c5c4f0a3a Merge branch 'zd_SCI_44' of https://github.com/ZmagoD/scinote-web into ZmagoD-zd_SCI_44 2016-08-05 15:23:01 +02:00
Mojca Lorber c691ca63e2 fixing houndci-bot comment 2016-08-05 09:47:06 +02:00
Mojca Lorber 5d137324bc moving and targeting .label class 2016-08-05 09:12:17 +02:00
Jure Grabnar d9702b6964 Remove unneeded new element 2016-08-05 08:36:06 +02:00
Jure Grabnar 2f0dc57ea6 Fix Hounds warning 2016-08-05 08:29:49 +02:00
Jure Grabnar a25a4354c6 Fix css, #hound. 2016-08-05 08:05:14 +02:00
Jure Grabnar cafec6a1b4 Fix controls on experiment contents 
Also fix bug with adjencent elements not updating controls.

Fixes SCI-35.
 2016-08-04 16:05:03 +02:00
Jure Grabnar 8b2b134614 Migrate old reports to new experiment level reports 2016-08-04 13:19:46 +02:00
zmagod a4ec558596 start to implement project overview page 2016-08-04 12:57:33 +02:00
zmagod f8f87e9540 Feed the Hound 2016-08-03 16:16:09 +02:00
zmagod 45dac782ca update sidebar [fixes SCI-303] 2016-08-03 16:09:45 +02:00
Jure Grabnar da2a06c999 Fix global sort to work with experiments 2016-08-03 14:59:53 +02:00
zmagod fd8187370e Feed the Hound part 3 2016-08-03 13:16:51 +02:00
Jure Grabnar 0c51f7bc8b Saving/editing of reports now works 2016-08-03 13:15:40 +02:00
zmagod 9d4a67a5b6 Feed the Hound 2 2016-08-03 13:11:46 +02:00
zmagod 57ac34e9f4 add samples to experiment page [fixes SCI-43] 2016-08-03 12:57:51 +02:00
Jure Grabnar 964b51f84a Add experiment reports element 2016-08-03 12:52:52 +02:00
Jure Grabnar aedaf2f30a Adding of experiment content now works in reports 2016-08-03 12:52:52 +02:00
Jure Grabnar 5854e72878 Add experiments_contents action 2016-08-03 12:52:52 +02:00
Jure Grabnar 9092dd6914 Replace all occurences of module_elements 2016-08-03 12:52:52 +02:00
Jure Grabnar ff081cd844 Simplify project contents dialog 2016-08-03 12:52:51 +02:00
Jure Grabnar dc82830a8f Add checkbox behaviour to experiment contents 2016-08-03 12:52:51 +02:00
Jure Grabnar 3f33ebe59a Fix wrong closure in experiment contents 2016-08-03 12:52:51 +02:00
Jure Grabnar acc41dae40 Add experiment content report dialog 
Adding still has to be implemented
 2016-08-03 12:52:51 +02:00
Jure Grabnar 41e8c54aa5 Rename _module_element_controls to element_controls 2016-08-03 12:52:06 +02:00
Jure Grabnar 1e334d9075 Remove unneeded "Add new report element" 2016-08-03 12:52:06 +02:00
Jure Grabnar d82ba163ed Add experiment to report screen 
Only placeholder for now, JS still needs fixing.
 2016-08-03 12:52:06 +02:00
Jure Grabnar ac708e7497 Remove no module group from reports 2016-08-03 12:52:06 +02:00
Jure Grabnar 797685fbf0 Remove workflows from project content dialog (report) 2016-08-03 12:52:06 +02:00
Jure Grabnar daca739262 Add new line to selector for readability 2016-08-03 12:52:06 +02:00
Jure Grabnar 598c5a63fd Add experiment level to project report contents modal 2016-08-03 12:52:05 +02:00
zmagod d11b0b11e9 Feed the Hound 2016-08-03 09:44:05 +02:00
zmagod caa80642c0 [fixes SCI-304], [fixes SCI-37] 2016-08-03 09:34:10 +02:00
Mojca Lorber ffa64445df fixes issue SCI-223 2016-08-02 16:30:07 +02:00
Zmago Devetak 43230384b5 Merge pull request #40 from ZmagoD/zd_SCI_261 
Fixed search query [fixes SCI-261]
 2016-08-02 11:44:00 +02:00
zmagod 18d73467c8 fixed hound warning 2016-08-02 11:16:07 +02:00
zmagod 166f907780 fixed search error 2016-08-02 11:10:30 +02:00
zmagod f184ee3f2d fixing hound warnings 2016-08-02 09:13:30 +02:00
zmagod 9581e2751f fixes samples page for experiment level [fixes SCI-44] 2016-08-02 08:44:07 +02:00
zmagod 6e3ce92348 add checking for step content 2016-08-01 11:23:22 +02:00
Luka Murn 40fe4e54a9 Feed the Hound #2 2016-07-29 16:48:56 +02:00
Luka Murn ecf5b5a2c1 Feed the Hound 2016-07-29 16:46:25 +02:00
Luka Murn 4d57479cf9 Remove comment 
Closes SCI-38.
 2016-07-29 16:40:42 +02:00
zmagod 95da62adde fixed hound 2016-07-29 16:38:42 +02:00
zmagod 25b99b6570 fixed search [fixes SCI-261] 2016-07-29 16:32:54 +02:00
Luka Murn 8a2b54819a More fixes on secondary navigation 2016-07-29 16:20:35 +02:00
Luka Murn bed8687dbd Remove some unused commented code 2016-07-29 16:08:30 +02:00
Luka Murn b085aa1db3 Remove uneccesary project_activities HTML pages 2016-07-29 16:06:35 +02:00
Luka Murn ed2226c14b Refactor sidebar 2016-07-29 15:58:47 +02:00
Luka Murn 34af50a9d0 Fix breadcrumbs & sidebar so it works 2016-07-29 15:47:41 +02:00
Luka Murn 0f0689eddc Fix permission helper 2016-07-29 11:43:15 +02:00
Luka Murn 4ea86d6aa1 Code style fixes 2016-07-29 10:41:08 +02:00
Luka Murn edafcaeed6 Move route module_archive_project -> module_archive_experiment 
Also add some new routes, move some templates.
 2016-07-29 10:25:02 +02:00
Luka Murn ebda92ef05 Add experiments_controller 2016-07-29 10:21:21 +02:00
Luka Murn 1ad265835b Move route canvas_project -> canvas_experiment 2016-07-29 10:08:28 +02:00
Luka Murn 0c75423cc0 Add TODO to project overview page 2016-07-29 09:46:26 +02:00
Luka Murn b64e200b91 Refactor canvas a lot. 
Also refactor localization files concerning canvas.
 2016-07-28 16:41:10 +02:00
Luka Murn c8ef3b1899 Fix first time generator 2016-07-28 16:40:51 +02:00
zmagod e95f518964 refactor canvas_controller, experiments_controller 2016-07-28 16:01:53 +02:00
zmagod d91aa5c60b fixed translation sting 'name' to 'experiment' 2016-07-28 14:57:47 +02:00
zmagod 23a46d5fb3 added translations to experiment create and edit flash messages 2016-07-28 14:52:11 +02:00
zmagod 352944fc33 added new/edit experiment modals 2016-07-28 14:44:44 +02:00
Luka Murn 1953e295b6 Hotfix for search results bug 2016-07-28 13:29:26 +02:00
zmagod 9d23cfd940 fixed experiment routes 2016-07-28 11:30:34 +02:00
zmagod c11932b45b fixed layout 2016-07-28 11:00:56 +02:00
zmagod d16c0fe706 fixed edit canvas 2016-07-28 10:09:05 +02:00
zmagod 54c4051906 added canvas under experiments 2016-07-28 09:01:44 +02:00
zmagod a17106b883 added experiments controller and fixed sidebar 2016-07-27 16:18:26 +02:00
Zmago Devetak c869db2506 Merge pull request #35 from ZmagoD/zd_SCI_40 
Edit canvas controller to work with experiments
 2016-07-27 12:11:19 +02:00
zmagod 485d93f8b9 refactor canvas permissions 2016-07-27 11:35:07 +02:00
Jure Grabnar 1a1c4bb68a Remove needless join from MyModuleGroup 2016-07-27 10:18:57 +02:00
zmagod 5c7501a273 added experiments canvas labels in localization file and fixed canvas views 2016-07-26 14:21:59 +02:00
zmagod 0a84ecdfc1 edit canvas controller to work with experiment 2016-07-26 14:02:06 +02:00
Jure Grabnar 77ed1c5fd3 Change invalid references to project in search and shorten lines. 2016-07-26 12:59:37 +02:00
Jure Grabnar 80621c9b6b Add experiment text to all searches related to experiment 2016-07-26 12:26:48 +02:00
Jure Grabnar 690ad0fffa Add a few experiment permissions 2016-07-26 12:26:48 +02:00
Jure Grabnar 3be562bdf6 Add experiment to search results 2016-07-26 12:26:48 +02:00
Jure Grabnar 6d26203796 Add missing target var to result searches 2016-07-26 12:26:48 +02:00
Jure Grabnar 5283027da1 Add missing target var to searches. 2016-07-26 12:26:48 +02:00
Jure Grabnar 0361f006ca Add SearchableModel to Experiment and fix children 2016-07-26 12:26:48 +02:00
Jure Grabnar 49cd8a783d Update first time data generator with experiment. 2016-07-26 12:20:31 +02:00
Zmago Devetak b13747291e Merge pull request #32 from ZmagoD/zd_SCI_31 
Fixing modules after integrating experiment-level
 2016-07-26 09:18:16 +02:00
zmagod 346bffe08f fixed protocol.rb 2016-07-26 09:17:24 +02:00
zmagod c27ffa9fbf fixed project_my_module method 2016-07-26 08:44:09 +02:00
Luka Murn 3187843d14 Change updated_by -> last_modified_by 2016-07-25 14:47:13 +02:00
zmagod 6053c782f9 fixed permission_helper [fixes SCI-34] 2016-07-25 12:07:10 +02:00
zmagod 18d66ece56 migrated model related functions to experiment.rb [fixes: SCI-31] 2016-07-25 11:25:10 +02:00
zmagod 426bce48b2 fixed permission_helper 2016-07-25 09:31:40 +02:00
zmagod b3c61cfa41 fixed project_my_modules method 2016-07-25 09:13:04 +02:00
zmagod 7c9a0bc2bb fixed models 2016-07-22 15:36:48 +02:00
zmagod 389ee7ea43 start fixing modules 2016-07-22 14:31:09 +02:00
Luka Murn 785fb2cba1 Initial migration & changes in ActiveRecords 2016-07-22 10:43:55 +02:00
Luka Murn 076b67620f Migration GitLab -> GitHub 2016-07-21 13:11:15 +02:00
Luka Murn 055298fee8 Initial commit. 2016-02-12 16:52:43 +01:00