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171 commits

Author SHA1 Message Date
Oleksii Kriuchykhin
f656ad1561 Fix fa icons [SCI-2217] 2018-03-30 17:03:44 +02:00
okriuchykhin
145f49de2d
Revert "Update turbolinks and fix repository table init [SCI-2251]" 2018-03-26 17:38:48 +02:00
Oleksii Kriuchykhin
83c7539156 Update turbolinks and fix repository table init [SCI-2251] 2018-03-25 19:44:58 +02:00
Oleksii Kriuchykhin
a105e61d48 Remove tutorial [SCI-1860] 2018-03-18 13:18:05 +01:00
zmagod
1cdba5e0d3 Merge branch 'samples_to_repositories_table_migration' of https://github.com/biosistemika/scinote-web into zd_SCI_2068 2018-03-16 11:05:16 +01:00
zmagod
d69754af04 implement search on list items dropdown, update, create actions [fixes SCI-2070] 2018-03-15 15:43:16 +01:00
zmagod
dd2f7dd417 Merge branch 'master' of https://github.com/biosistemika/scinote-web into samples_to_repositories_table_migration 2018-03-13 13:24:36 +01:00
zmagod
41db1a9ab3 update bootstrap to v 3.3.7 2018-03-12 08:57:02 +01:00
mlorb
08439e7f58 sign up with linkedIn account 2018-02-28 18:12:21 +01:00
Oleksii Kriuchykhin
16e1d072b9 Improve files handling in protocol clonning [SCI-2003] 2018-02-01 15:44:08 +01:00
Oleksii Kriuchykhin
b8b13b2086 Update Ruby version to 2.4.3 2018-01-31 10:02:45 +01:00
zmagod
c6f44e799c fixes JWT dependency issues 2018-01-23 16:25:59 +01:00
zmagod
88d7429041 1. fixes failing unit and integration tests 
2. fixes gem dependencies issues
3. fixes failing migrations
4. updates depricated factory_girl => factory_bot and fixes related issues

Signed-off-by: zmagod <zmago_devetak@yahoo.com>
 2018-01-23 14:54:15 +01:00
zmagod
f8a3fca2db Merge branch 'master' of https://github.com/biosistemika/scinote-web into decoupling 2018-01-23 11:06:33 +01:00
Matej Zrimšek
9ef04a6a2b Set strict version for rubocop gem, because the new one is not compatible with the previously used one. Also updated it to the newest version. 2018-01-16 17:01:44 +01:00
Oleksii Kriuchykhin
b98241ef61 Fix bootstrap select dropdown [SCI-1895][SCI-1896] 2017-12-22 09:52:00 +01:00
Luka Murn
704bd31fef Set wicked_pdf version to ~> 1.0.6 2017-12-20 10:53:53 +01:00
Oleksii Kriuchykhin
1a81a99ff0 Remove Creek XLSX parser gem as it causes conflicts [SCI-1891] 2017-12-19 16:17:11 +01:00
Luka Murn
cf291bf887 Merge branch 'gilson-iot-rails4' 
Conflicts:
	Gemfile.lock
 2017-12-19 10:56:39 +01:00
Oleksii Kriuchykhin
9408b29768 Update Rails version to 4.2.10 [SCI-1845] 2017-11-29 16:49:50 +01:00
zmagod
930e3a86dc Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1762 2017-11-23 13:56:17 +01:00
Luka Murn
c51a85a161
Merge pull request #888 from biosistemika/lm-sci-1795 
Setup main architecture for permissions refactoring [SCI-1795]
 2017-11-23 12:32:49 +01:00
Zmago Devetak
2f66c1df25
adds travis config file (#873) 
* adds travis config file

* add dist to travis

* adds script section

* test env

* remove globals

* adds hashed variables

* add matrix

* removed matrix

* test env

* testing

* test

* update Gemfile

* test travis

* test

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* test travis

* test

* build with docker

* test

* test

* ads

* add devise secre

* test travis

* test

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* adds travis db configurations

* make travis happy

* test

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* test

* testing devise

* test

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* teset

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* edit env

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 2017-11-23 09:55:57 +01:00
zmagod
70db34090d fixes rspec tests 2017-11-20 09:41:14 +01:00
Luka Murn
ccef5571f1 Add dependency to Canaid, the permission helper library 2017-11-16 15:49:13 +01:00
Oleksii Kriuchykhin
84f4aba213 Pull latest master into gilson-iot-rails4 2017-11-15 15:15:26 +01:00
zmagod
327e27e123 Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1576 2017-11-09 15:55:10 +01:00
zmagod
9eac014f1a Merge branch 'decoupling-settings-page' of https://github.com/biosistemika/scinote-web into zd_SCI_1731 2017-11-09 09:05:22 +01:00
zmagod
b036452d8c adds background worker to cucumber tests 2017-11-08 11:59:01 +01:00
mlorb
1c3c822796 change drivers for browser 2017-11-06 14:26:01 +01:00
zmagod
e0323a0a46 fixes failing tests 2017-10-27 09:35:39 +02:00
zmagod
3d22a5404d add scenic gem, teams datatables sql view 2017-10-26 16:59:00 +02:00
zmagod
4de335d189 add whacamole configuration [fixes SCI-1683] 2017-10-25 09:47:26 +02:00
Luka Murn
82f982e983 Merge branch 'rails-5.1' into decoupling-settings-page 
Conflicts:
	Gemfile
	Gemfile.lock
 2017-10-23 10:59:10 +02:00
Luka Murn
e740e586e8 Additional fixes required by latest merge from master (nr. 2) 2017-10-23 10:43:32 +02:00
Luka Murn
8254153bb9 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile
	Gemfile.lock
	app/models/connection.rb
	app/models/experiment.rb
	app/models/my_module.rb
 2017-10-23 08:57:57 +02:00
okriuchykhin
8e90e041b9 Merge pull request #825 from okriuchykhin/ok_SCI_1665 
Optimize memory usage in samples/repositories import [SCI-1665]
 2017-10-17 17:26:00 +02:00
Oleksii Kriuchykhin
c8d2ae70fa Move duplicated code to service [SCI-1665] 2017-10-17 14:46:16 +02:00
Oleksii Kriuchykhin
56f52ebfa7 Optimize memory usage in samples/repositories import [SCI-1665] 2017-10-12 14:43:25 +02:00
zmagod
dccf4e34ff fix cucumber settings 2017-10-12 13:50:48 +02:00
mlorb
c358f8fa0c write unit tests for invite users 2017-09-28 14:49:33 +02:00
Oleksii Kriuchykhin
faaa016267 Update AWS SDK v2 [SCI-1623] 2017-09-26 13:41:53 +02:00
mlorb
48c8922604 adds invite users modal 2017-09-21 10:45:35 +02:00
Luka Murn
e078ae4f77 Merge branch 'rails-5.1' into decoupling-settings-page 2017-09-21 08:36:09 +02:00
Luka Murn
beae1b05d8 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile
	Gemfile.lock
 2017-09-21 08:27:38 +02:00
Luka Murn
8463c89386 Update Gemfile 2017-09-01 09:36:40 +02:00
Oleksii Kriuchykhin
c3fceb90df Backport API to Rails-4 [SCI-1579] 2017-08-30 13:30:41 +02:00
zmagod
ee054f91b8 adds bullet gem [fixes SCI-1578] 2017-08-30 09:29:45 +02:00
Luka Murn
b6eb46471a Merge pull request #753 from Ducz0r/lm-remove-some-code 
Remove some code we're no longer maintaining
 2017-08-22 14:04:04 +02:00
Luka Murn
90188c89c9 Update delayed_paperclip library 
Closes SCI-1376.
 2017-08-22 08:34:58 +02:00
zmagod
c5e32c4ea0 Merge branch 'rails-5.1' of https://github.com/biosistemika/scinote-web into merge-rails-5.1-branch 2017-08-21 09:52:14 +02:00
Luka Murn
13eae287bb Revert "Add core API using JWT authentication and tests for it [SCI-1507]" 2017-08-07 11:54:45 +02:00
Luka Murn
ae5bccf709 Merge branch 'master' into rails-5.1 
Conflicts:
	Gemfile.lock
	app/datatables/repository_datatable.rb
	app/models/repository_cell.rb
 2017-08-07 08:45:53 +02:00
Oleksii Kriuchykhin
e958410261 Add core API using JWT authentication and tests for it [SCI-1507] 2017-08-03 17:00:14 +02:00
zmagod
6ef19725f1 adds redux 2017-08-02 17:27:05 +02:00
Luka Murn
03a7440136 Remove SkyLight stuff (we're not using it any more) 2017-07-27 14:26:44 +02:00
zmagod
416ab8eee3 Merge branch 'rails-5.1' of https://github.com/biosistemika/scinote-web into zd_SCI_1400 2017-07-26 16:20:09 +02:00
Oleksii Kriuchykhin
6c33b46f6a Improve import of repository records plus tsv file import fixes [SCI-1487] 2017-07-20 11:44:10 +02:00
Oleksii Kriuchykhin
ece27b2652 Fix importing files with empty header cells and error messages improvements [SCI-1484] 2017-07-18 14:54:35 +02:00
Oleksii Kriuchykhin
b8e93ee883 Add Webpacker and React [SCI-1461] 2017-07-12 16:41:55 +02:00
zmagod
6636190442 removes unneeded gems, adds validation test to models 2017-07-06 17:37:29 +02:00
zmagod
234ca71f0a removes unneded gems, fixes hound 2017-07-06 09:45:59 +02:00
zmagod
750c82a80f setup testing tools [fixes SCI-1400] 2017-07-06 09:07:05 +02:00
zmagod
bc33883c3c first run fixing addons 2017-06-30 10:23:28 +02:00
zmagod
71aa05bb0e refactor 2017-06-27 14:58:49 +02:00
zmagod
819f47b450 setup sciNote for Rails 5.1 2017-06-23 15:19:08 +02:00
zmagod
1b21f073d7 Rails 5.1.1 2017-06-23 10:34:46 +02:00
zmagod
909a114418 Rails 5.0.0.rc2 2017-06-23 10:08:54 +02:00
zmagod
75507107fd migrate to 4.2.9 2017-06-23 08:50:12 +02:00
Paul Menzel
24b97637b4 Gemfile: Use HTTPS protocol for sneaky-save 
Address the Bundler warning below.

```
Step 6/14 : RUN bundle install
 ---> Running in bfbfa83e61de
The git source `git://github.com/einzige/sneaky-save.git` uses the `git` protocol, which transmits data without encryption. Disable this warning with `bundle config git.allow_insecure true`, or switch to the `https` protocol to keep your data secure.
Your Ruby version is 2.3.4, but your Gemfile specified 2.3.3
The command '/bin/sh -c bundle install' returned a non-zero code: 18
```
 2017-06-07 11:47:16 +02:00
zmagod
10db322307 fixes input sanitize method [fixes SCI-1248] 2017-05-10 14:57:11 +02:00
zmagod
5b58824ec0 refactor 2017-05-03 15:30:08 +02:00
zmagod
550f563666 working version for steps first run 2017-04-21 16:09:04 +02:00
zmagod
c25df63a14 add tinymce img importer and refactor input sanitize helper 2017-04-19 09:11:52 +02:00
Zmago Devetak
9c31239318 Merge pull request #552 from biosistemika/release-1.9.0 
Release 1.9.1
 2017-04-12 13:08:37 +02:00
Luka Murn
e656101c47 Revert Wicked PDF Gem version 2017-04-12 09:27:31 +02:00
Luka Murn
a30c7a77e8 Silence Wicked PDF generation 
Closes SCI-1107.
 2017-04-10 14:00:31 +02:00
zmagod
9a17648eee Adds new relic in sciNote [fixes SCI-1183] 2017-04-07 11:23:45 +02:00
Oleksii Kriuchykhin
a7be37ef67 Add docker files for running in production mode [SCI-1096] 2017-03-27 14:36:20 +02:00
Luka Murn
ee65e46fc7 Remove 'nokogiri' Gem being included twice 2017-03-22 10:37:11 +01:00
zmagod
0c2523beca Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-03-10 16:21:43 +01:00
Luka Murn
53699193a2 Merge branch 'smart-annotations' 
Conflicts:
	app/assets/javascripts/comments.js.erb
	app/assets/javascripts/protocols/index.js
	app/assets/javascripts/protocols/steps.js.erb
	app/assets/javascripts/samples/sample_datatable.js.erb
	app/controllers/my_module_comments_controller.rb
	app/controllers/project_comments_controller.rb
	app/controllers/result_comments_controller.rb
	app/controllers/step_comments_controller.rb
	app/datatables/sample_datatable.rb
	app/views/my_module_comments/_comment.html.erb
	app/views/project_comments/_comment.html.erb
	app/views/projects/show/_experiment.html.erb
	app/views/reports/elements/_experiment_element.html.erb
	app/views/reports/elements/_result_comments_element.html.erb
	app/views/reports/elements/_result_text_element.html.erb
	app/views/reports/elements/_step_checklist_element.html.erb
	app/views/reports/elements/_step_comments_element.html.erb
	app/views/reports/elements/_step_element.html.erb
	app/views/result_comments/_comment.html.erb
	app/views/results/_result_text.html.erb
	app/views/step_comments/_comment.html.erb
	app/views/steps/_step.html.erb
	db/schema.rb
 2017-01-24 14:33:23 +01:00
Oleksii Kriuchykhin
1abd7fc574 Added xml schemas and zip gem [SCI-742] 2017-01-23 17:34:02 +01:00
zmagod
65fa631b1c adding tinyMce first run 2017-01-18 22:40:08 +01:00
Luka Murn
cf72da5635 Merge branch 'improved-files-handling' into 'master' 
Conflicts:
	app/assets/javascripts/protocols/steps.js.erb
	app/helpers/assets_helper.rb
	db/schema.rb
 2017-01-18 11:29:40 +01:00
Luka Murn
eb64162633 Remove Gem dependency, add atwho as regular vendor/js 2017-01-05 12:06:59 +01:00
Luka Murn
23e60e0d01 Add Gems for smart annotations (atwho) 2017-01-04 10:51:55 +01:00
zmagod
a434649f42 Merge branch 'master' of https://github.com/biosistemika/scinote-web into office_integration 2017-01-03 16:35:25 +01:00
Zmago Devetak
c8631077df Merge pull request #361 from biosistemika/improved-sample-table 
Improved sample table
 2016-12-16 15:37:54 +01:00
zmagod
62e4d32221 updated gemfile 2016-12-16 10:45:14 +01:00
zmagod
ac52e643be cleanup direct upload 2016-12-08 11:26:13 +01:00
Zmago Devetak
91f29745c4 Merge pull request #314 from ZmagoD/zd_SCI_643 
adds autolink
 2016-12-05 10:47:23 +01:00
Matej Zrimšek
46465060d0 Added automatic sign in with token authentication, needed when signing in from different webpage. [closes SCI-689] 2016-11-30 16:56:56 +01:00
Luka Murn
76ec77fce4 Merge pull request #329 from biosistemika/simplify-signup 
Merge simplify-signup into master
 2016-11-30 09:41:20 +01:00
Luka Murn
de7c0ad641 Remove commit reference to quill-rails in Gemfile 2016-11-24 09:19:43 +01:00
zmagod
fafecce264 adds autolink to comments, tast desc., step desc., experiment desc., samples table 'only custom fields', checklists [fixes SCI-643] 2016-11-23 14:18:50 +01:00
Mojca Lorber
60f23b109b integrate reCaptcha into sciNote 2016-11-22 14:57:41 +01:00
Luka Murn
26d04b1f3c Merge branch 'rich-text-formatting' into 'master' 
Conflicts:
	Gemfile.lock
	app/assets/stylesheets/themes/scinote.scss
 2016-11-17 16:39:33 +01:00
Luka Murn
d1701bd7ae Merge pull request #276 from Ducz0r/lm-sci-637 
Automatically resize textarea elements [SCI-637]
 2016-11-17 09:58:36 +01:00
Luka Murn
8302a87671 Update Gemfile 2016-11-16 10:07:18 +01:00